Wall clock time and date at job start Mon Mar 30 2020 04:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34807 * 116.99744 * 2 1 4 4 O 1.21537 * 119.99908 * 0.02562 * 3 2 1 5 5 C 1.47196 * 119.99881 * 180.02562 * 3 2 1 6 6 C 1.39130 * 120.30094 * 359.97438 * 5 3 2 7 7 C 1.38519 * 120.43314 * 180.02562 * 6 5 3 8 8 C 1.38192 * 120.79074 * 0.02562 * 7 6 5 9 9 C 1.38706 * 120.24592 * 359.97438 * 8 7 6 10 10 N 1.37946 * 133.70959 * 179.97438 * 9 8 7 11 11 H 0.97004 * 126.54950 * 0.03277 * 10 9 8 12 12 C 1.37736 * 106.89712 * 180.02562 * 10 9 8 13 13 C 1.40117 * 125.32738 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00153 * 0.26759 * 13 12 10 15 15 C 1.40465 * 119.99654 * 179.97438 * 13 12 10 16 16 N 1.30515 * 120.00110 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99650 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47093 * 60.00127 * 17 15 13 19 19 H 1.48495 * 109.47002 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47239 * 299.99847 * 17 15 13 21 21 N 1.32643 * 109.34591 * 0.26386 * 12 10 9 22 22 C 1.33498 * 109.79440 * 359.56066 * 21 12 10 23 23 H 1.08998 * 109.47791 * 59.99507 * 1 2 3 24 24 H 1.09006 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47044 * 299.99678 * 1 2 3 26 26 H 1.08005 * 119.78541 * 0.02562 * 6 5 3 27 27 H 1.08004 * 119.60755 * 180.02562 * 7 6 5 28 28 H 1.07997 * 119.87866 * 179.97438 * 8 7 6 29 29 H 0.97000 * 120.00169 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2012 0.0000 4 8 1.4019 2.2204 0.0005 5 6 3.5338 1.2782 -0.0006 6 6 4.2977 0.1154 -0.0006 7 6 5.6812 0.1847 -0.0006 8 6 6.3283 1.4058 0.0000 9 6 5.5967 2.5842 0.0000 10 7 5.9411 3.9200 0.0009 11 1 6.8399 4.2848 0.0013 12 6 4.7649 4.6367 0.0009 13 6 4.6678 6.0345 0.0012 14 1 5.5634 6.6380 -0.0030 15 6 3.4056 6.6508 0.0007 16 7 2.3233 5.9214 -0.0006 17 14 3.2762 8.5143 0.0018 18 1 3.9411 9.0574 -1.2099 19 1 1.8452 8.9111 0.0003 20 1 3.9394 9.0559 1.2151 21 7 3.7385 3.7966 0.0059 22 6 4.1841 2.5382 -0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8089 -0.8477 -0.0006 27 1 6.2611 -0.7264 -0.0010 28 1 7.4076 1.4427 0.0004 29 1 1.4516 6.3470 -0.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218687066.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:55 Heat of formation + Delta-G solvation = -21.829404 kcal Electronic energy + Delta-G solvation = -17171.567249 eV Core-core repulsion = 14253.274598 eV Total energy + Delta-G solvation = -2918.292652 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50045 -39.14754 -36.04308 -35.30831 -33.65790 -31.71588 -29.47517 -28.84553 -26.95880 -26.08746 -22.73328 -21.10488 -20.80910 -19.58969 -17.63250 -16.96221 -16.38131 -15.79113 -15.48051 -14.96293 -14.86384 -13.98625 -13.75076 -13.10552 -12.84688 -12.81750 -12.46766 -11.80823 -11.54165 -11.43867 -11.19866 -10.94930 -10.70945 -10.69477 -10.50458 -10.03445 -9.59700 -9.36495 -9.20740 -7.98261 -7.47141 -7.07807 -6.76095 -4.78119 1.60524 2.52864 2.96000 2.96856 3.00442 3.55913 3.66433 3.73800 4.05970 4.36149 4.87033 5.40313 5.49754 5.57950 5.64467 5.72983 5.76916 5.92492 6.16626 6.30899 6.48516 6.63824 6.83536 7.01547 7.18510 7.25967 7.33898 7.51710 7.74328 7.79768 8.10410 8.46690 8.88662 8.97940 9.80598 10.08205 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022513 B = 0.008259 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.426805 B = 3389.598187 C = 4617.879835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.373 6.373 3 C 0.497 3.503 4 O -0.478 6.478 5 C -0.164 4.164 6 C -0.056 4.056 7 C -0.201 4.201 8 C -0.078 4.078 9 C -0.007 4.007 10 N -0.659 5.659 11 H 0.404 0.596 12 C 0.412 3.588 13 C -0.422 4.422 14 H 0.092 0.908 15 C 0.067 3.933 16 N -0.684 5.684 17 Si 0.922 3.078 18 H -0.263 1.263 19 H -0.273 1.273 20 H -0.263 1.263 21 N -0.509 5.509 22 C 0.174 3.826 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.120 0.880 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -5.041 -0.012 5.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.292 6.292 3 C 0.342 3.658 4 O -0.363 6.363 5 C -0.169 4.169 6 C -0.076 4.076 7 C -0.222 4.222 8 C -0.101 4.101 9 C -0.115 4.115 10 N -0.276 5.276 11 H 0.240 0.760 12 C 0.179 3.821 13 C -0.458 4.458 14 H 0.110 0.890 15 C -0.163 4.163 16 N -0.304 5.304 17 Si 0.745 3.255 18 H -0.187 1.187 19 H -0.198 1.198 20 H -0.187 1.187 21 N -0.233 5.233 22 C 0.039 3.961 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.138 0.862 27 H 0.130 0.870 28 H 0.121 0.879 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.620 -4.424 -0.005 4.468 hybrid contribution 1.080 0.756 -0.008 1.319 sum 1.700 -3.668 -0.013 4.043 Atomic orbital electron populations 1.23017 0.78085 1.02216 1.02044 1.86551 1.21917 1.34589 1.86112 1.21222 0.89415 0.80835 0.74339 1.90938 1.66127 1.35020 1.44261 1.17775 0.87658 0.91573 1.19937 1.20831 0.93467 0.96280 0.97038 1.20206 0.93782 0.95837 1.12391 1.19796 0.97595 0.90060 1.02659 1.18850 0.96139 0.85443 1.11022 1.43354 1.09099 1.04012 1.71102 0.75992 1.20658 0.78017 0.93627 0.89829 1.18669 0.94532 0.87324 1.45246 0.88987 1.26007 0.94964 1.01203 0.94151 1.69980 0.98920 1.37587 1.23879 0.86139 0.78593 0.80783 0.79956 1.18731 1.19798 1.18718 1.71556 1.25169 0.95948 1.30620 1.19192 0.88841 0.93150 0.94899 0.92596 0.89184 0.92588 0.86237 0.86956 0.87903 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.57 101.05 1.07 1.69 15 2 O -0.37 -7.28 9.80 -40.78 -0.40 -7.68 15 3 C 0.50 11.88 7.89 34.37 0.27 12.15 15 4 O -0.48 -13.13 15.84 -19.29 -0.31 -13.44 15 5 C -0.16 -3.92 5.91 -104.57 -0.62 -4.54 15 6 C -0.06 -1.10 9.60 -39.15 -0.38 -1.47 15 7 C -0.20 -3.64 10.01 -39.49 -0.40 -4.04 15 8 C -0.08 -1.51 10.05 -39.43 -0.40 -1.91 15 9 C -0.01 -0.15 7.29 -83.76 -0.61 -0.76 15 10 N -0.66 -14.86 6.32 -9.90 -0.06 -14.92 15 11 H 0.40 7.43 8.96 -40.82 -0.37 7.07 15 12 C 0.41 10.91 7.56 -155.66 -1.18 9.73 15 13 C -0.42 -10.51 9.47 -38.04 -0.36 -10.87 15 14 H 0.09 2.01 7.85 -52.49 -0.41 1.60 15 15 C 0.07 1.65 5.50 -17.27 -0.10 1.55 15 16 N -0.68 -18.47 11.85 55.57 0.66 -17.81 15 17 Si 0.92 17.59 29.56 -169.99 -5.03 12.57 15 18 H -0.26 -4.89 7.11 56.52 0.40 -4.48 15 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 20 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 21 N -0.51 -14.80 8.57 -10.10 -0.09 -14.88 15 22 C 0.17 4.62 6.83 -84.61 -0.58 4.04 15 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.12 2.03 7.59 -52.48 -0.40 1.63 15 27 H 0.11 1.64 8.06 -52.48 -0.42 1.21 15 28 H 0.10 1.65 8.06 -52.49 -0.42 1.23 15 29 H 0.29 7.03 8.29 -40.82 -0.34 6.69 15 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -32.53 267.18 -6.89 -39.41 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -2.42 Total: 7.16 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -3.27 Total: 5.56 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.51 Total: -47.61 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.71 Total: -21.12 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.53 -6.89 -39.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218687066.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.584 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds