Wall clock time and date at job start Mon Mar 30 2020 04:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34807 * 116.99744 * 2 1 4 4 O 1.21537 * 119.99908 * 0.02562 * 3 2 1 5 5 C 1.47196 * 119.99881 * 180.02562 * 3 2 1 6 6 C 1.39130 * 120.30094 * 359.97438 * 5 3 2 7 7 C 1.38519 * 120.43314 * 180.02562 * 6 5 3 8 8 C 1.38192 * 120.79074 * 0.02562 * 7 6 5 9 9 C 1.38706 * 120.24592 * 359.97438 * 8 7 6 10 10 N 1.37946 * 133.70959 * 179.97438 * 9 8 7 11 11 H 0.97004 * 126.54950 * 0.03277 * 10 9 8 12 12 C 1.37736 * 106.89712 * 180.02562 * 10 9 8 13 13 C 1.40117 * 125.32738 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00153 * 0.26759 * 13 12 10 15 15 C 1.40465 * 119.99654 * 179.97438 * 13 12 10 16 16 N 1.30515 * 120.00110 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99650 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47093 * 60.00127 * 17 15 13 19 19 H 1.48495 * 109.47002 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47239 * 299.99847 * 17 15 13 21 21 N 1.32643 * 109.34591 * 0.26386 * 12 10 9 22 22 C 1.33498 * 109.79440 * 359.56066 * 21 12 10 23 23 H 1.08998 * 109.47791 * 59.99507 * 1 2 3 24 24 H 1.09006 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47044 * 299.99678 * 1 2 3 26 26 H 1.08005 * 119.78541 * 0.02562 * 6 5 3 27 27 H 1.08004 * 119.60755 * 180.02562 * 7 6 5 28 28 H 1.07997 * 119.87866 * 179.97438 * 8 7 6 29 29 H 0.97000 * 120.00169 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2012 0.0000 4 8 1.4019 2.2204 0.0005 5 6 3.5338 1.2782 -0.0006 6 6 4.2977 0.1154 -0.0006 7 6 5.6812 0.1847 -0.0006 8 6 6.3283 1.4058 0.0000 9 6 5.5967 2.5842 0.0000 10 7 5.9411 3.9200 0.0009 11 1 6.8399 4.2848 0.0013 12 6 4.7649 4.6367 0.0009 13 6 4.6678 6.0345 0.0012 14 1 5.5634 6.6380 -0.0030 15 6 3.4056 6.6508 0.0007 16 7 2.3233 5.9214 -0.0006 17 14 3.2762 8.5143 0.0018 18 1 3.9411 9.0574 -1.2099 19 1 1.8452 8.9111 0.0003 20 1 3.9394 9.0559 1.2151 21 7 3.7385 3.7966 0.0059 22 6 4.1841 2.5382 -0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8089 -0.8477 -0.0006 27 1 6.2611 -0.7264 -0.0010 28 1 7.4076 1.4427 0.0004 29 1 1.4516 6.3470 -0.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218687066.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:55 Heat of formation + Delta-G solvation = -43.812006 kcal Electronic energy + Delta-G solvation = -17172.520486 eV Core-core repulsion = 14253.274598 eV Total energy + Delta-G solvation = -2919.245889 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.25928 -40.89362 -37.69765 -37.08258 -35.44448 -33.49984 -31.19641 -30.60689 -28.36814 -27.82804 -24.43084 -22.79988 -22.62226 -21.31294 -19.40077 -18.68403 -18.13190 -17.47302 -17.12519 -16.68094 -16.44956 -15.53359 -15.52720 -14.76853 -14.51188 -14.39051 -14.11453 -13.39989 -13.03988 -13.01208 -12.82775 -12.54791 -12.36342 -12.29544 -12.03988 -11.63339 -11.34093 -11.22195 -10.98388 -9.82940 -9.20658 -8.83521 -8.54056 -6.65399 -0.12163 0.87641 1.39795 1.46794 1.56349 1.87269 1.97724 2.14846 2.31533 2.69122 3.13418 3.55134 3.89970 4.18219 4.27127 4.36297 4.41363 4.60264 4.65460 4.72642 4.83130 5.01357 5.12548 5.39443 5.48214 5.53930 5.70316 5.81790 6.03328 6.12723 6.37040 6.65565 7.12462 7.26941 7.99198 8.33552 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022513 B = 0.008259 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.426805 B = 3389.598187 C = 4617.879835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.363 6.363 3 C 0.496 3.504 4 O -0.529 6.529 5 C -0.192 4.192 6 C -0.047 4.047 7 C -0.178 4.178 8 C -0.064 4.064 9 C -0.028 4.028 10 N -0.646 5.646 11 H 0.421 0.579 12 C 0.385 3.615 13 C -0.453 4.453 14 H 0.115 0.885 15 C 0.022 3.978 16 N -0.748 5.748 17 Si 1.007 2.993 18 H -0.251 1.251 19 H -0.275 1.275 20 H -0.250 1.250 21 N -0.563 5.563 22 C 0.117 3.883 23 H 0.050 0.950 24 H 0.142 0.858 25 H 0.050 0.950 26 H 0.152 0.848 27 H 0.167 0.833 28 H 0.146 0.854 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -6.884 -0.013 7.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.343 3.657 4 O -0.419 6.419 5 C -0.198 4.198 6 C -0.067 4.067 7 C -0.198 4.198 8 C -0.086 4.086 9 C -0.136 4.136 10 N -0.264 5.264 11 H 0.260 0.740 12 C 0.149 3.851 13 C -0.489 4.489 14 H 0.133 0.867 15 C -0.202 4.202 16 N -0.369 5.369 17 Si 0.825 3.175 18 H -0.174 1.174 19 H -0.200 1.200 20 H -0.174 1.174 21 N -0.288 5.288 22 C -0.015 4.015 23 H 0.068 0.932 24 H 0.160 0.840 25 H 0.069 0.931 26 H 0.170 0.830 27 H 0.184 0.816 28 H 0.164 0.836 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.716 -6.355 -0.007 6.910 hybrid contribution 0.504 0.937 -0.008 1.064 sum 3.220 -5.417 -0.014 6.302 Atomic orbital electron populations 1.23427 0.75588 1.05428 1.01592 1.86513 1.24271 1.32015 1.85248 1.21489 0.89874 0.81225 0.73119 1.90914 1.67232 1.36946 1.46763 1.18257 0.88173 0.92422 1.20909 1.21271 0.94389 0.95984 0.95064 1.20890 0.93322 0.97348 1.08270 1.20394 0.99739 0.88821 0.99622 1.19234 0.95318 0.86610 1.12453 1.43192 1.09101 1.03802 1.70306 0.74002 1.21022 0.78971 0.94380 0.90755 1.19192 0.95844 0.87379 1.46505 0.86725 1.27187 0.94026 1.06666 0.92361 1.70176 0.99623 1.40145 1.26955 0.84897 0.78426 0.73515 0.80626 1.17428 1.19956 1.17419 1.71424 1.27411 0.97696 1.32279 1.19765 0.91143 0.93333 0.97242 0.93153 0.83957 0.93150 0.83028 0.81603 0.83598 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.57 113.37 1.20 2.17 15 2 O -0.36 -13.87 9.80 -57.18 -0.56 -14.43 15 3 C 0.50 24.36 7.89 70.18 0.55 24.92 15 4 O -0.53 -30.87 15.84 19.72 0.31 -30.56 15 5 C -0.19 -9.26 5.91 -19.83 -0.12 -9.38 15 6 C -0.05 -1.71 9.60 22.55 0.22 -1.49 15 7 C -0.18 -5.51 10.01 22.33 0.22 -5.29 15 8 C -0.06 -2.21 10.05 22.37 0.22 -1.99 15 9 C -0.03 -1.29 7.29 39.05 0.28 -1.00 15 10 N -0.65 -29.44 6.32 -185.23 -1.17 -30.62 15 11 H 0.42 15.30 8.96 -92.71 -0.83 14.47 15 12 C 0.38 21.32 7.56 133.66 1.01 22.33 15 13 C -0.45 -23.44 9.47 23.27 0.22 -23.22 15 14 H 0.11 5.09 7.85 -2.91 -0.02 5.07 15 15 C 0.02 1.14 5.50 85.43 0.47 1.61 15 16 N -0.75 -43.20 11.85 21.91 0.26 -42.94 15 17 Si 1.01 37.08 29.56 68.60 2.03 39.10 15 18 H -0.25 -8.62 7.11 99.48 0.71 -7.91 15 19 H -0.27 -10.00 7.11 99.48 0.71 -9.30 15 20 H -0.25 -8.62 7.11 99.48 0.71 -7.91 15 21 N -0.56 -34.64 8.57 -185.85 -1.59 -36.24 15 22 C 0.12 6.41 6.83 40.53 0.28 6.69 15 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 15 24 H 0.14 2.71 8.14 -2.38 -0.02 2.69 15 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 15 26 H 0.15 4.47 7.59 -2.91 -0.02 4.45 15 27 H 0.17 3.50 8.06 -2.91 -0.02 3.48 15 28 H 0.15 3.82 8.06 -2.91 -0.02 3.80 15 29 H 0.28 15.12 8.29 -92.71 -0.77 14.35 15 Total: -1.00 -78.30 267.18 4.21 -74.09 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.37 Total: 26.24 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 4.56 Total: 15.34 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -2.51 Total: -109.80 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.25 Total: -44.98 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.10 kcal Total: -78.30 4.21 -74.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218687066.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.282 kcal (2) G-P(sol) polarization free energy of solvation -78.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds