Wall clock time and date at job start Mon Mar 30 2020 03:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34428 * 126.81994 * 2 1 4 4 N 1.30836 * 108.07404 * 180.02562 * 3 2 1 5 5 C 1.33239 * 109.82931 * 359.97438 * 4 3 2 6 6 C 1.50704 * 125.52626 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47108 * 90.02299 * 6 5 4 8 8 S 1.65608 * 119.99652 * 164.99992 * 7 6 5 9 9 O 1.42104 * 106.39724 * 178.54027 * 8 7 6 10 10 O 1.42097 * 106.40199 * 311.45938 * 8 7 6 11 11 C 1.76195 * 107.21632 * 65.00196 * 8 7 6 12 12 H 1.08001 * 120.00866 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99874 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00033 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00076 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47022 * 90.00022 * 15 13 11 17 17 H 1.48503 * 109.47301 * 209.99571 * 15 13 11 18 18 H 1.48496 * 109.47405 * 329.99823 * 15 13 11 19 19 N 1.30711 * 108.94971 * 0.26466 * 5 4 3 20 20 H 1.08997 * 109.47248 * 89.99900 * 1 2 3 21 21 H 1.09001 * 109.47249 * 209.99974 * 1 2 3 22 22 H 1.09002 * 109.47040 * 329.99568 * 1 2 3 23 23 H 1.07999 * 125.96454 * 359.97438 * 3 2 1 24 24 H 1.09005 * 109.46813 * 330.02621 * 6 5 4 25 25 H 1.09000 * 109.47056 * 210.02987 * 6 5 4 26 26 H 0.96997 * 120.00126 * 344.99915 * 7 6 5 27 27 H 0.96997 * 119.99891 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2706 1.0761 0.0000 4 7 3.5095 0.6557 -0.0006 5 6 3.5347 -0.6765 -0.0004 6 6 4.7776 -1.5289 -0.0003 7 7 5.1801 -1.8053 1.3809 8 16 6.2748 -3.0063 1.6997 9 8 6.4782 -3.0008 3.1061 10 8 5.8345 -4.1513 0.9826 11 6 7.8057 -2.5227 0.9736 12 1 7.8794 -1.5851 0.4428 13 6 8.9096 -3.3414 1.0831 14 7 8.8202 -4.4831 1.7299 15 14 10.5325 -2.8291 0.3127 16 1 11.3231 -2.0480 1.2976 17 1 11.2951 -4.0394 -0.0859 18 1 10.2693 -1.9928 -0.8857 19 7 2.3067 -1.1243 -0.0054 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.9509 2.1077 -0.0004 24 1 5.5807 -1.0002 -0.5139 25 1 4.5740 -2.4682 -0.5145 26 1 4.8054 -1.2849 2.1087 27 1 9.5969 -5.0588 1.8072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218912188.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:44 Heat of formation + Delta-G solvation = 1.678055 kcal Electronic energy + Delta-G solvation = -15575.857580 eV Core-core repulsion = 12690.487896 eV Total energy + Delta-G solvation = -2885.369684 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.06018 -35.39741 -35.00162 -33.89448 -33.45704 -32.98799 -31.13418 -27.89649 -26.07294 -25.30410 -22.10227 -20.57618 -18.95985 -17.44005 -17.10079 -16.15165 -16.01988 -15.42252 -15.00725 -14.70618 -14.02693 -13.65331 -13.42850 -13.17701 -12.86065 -12.49596 -11.93437 -11.80514 -11.19507 -11.15326 -10.55002 -10.51483 -10.23307 -10.13716 -9.98981 -9.81871 -9.53515 -9.18824 -8.99353 -8.46768 -6.64248 -5.25862 1.55982 2.22192 2.36754 2.98420 3.12596 3.19484 3.26809 4.11222 4.15681 4.33454 4.69268 4.73282 4.85345 4.90108 5.08641 5.16864 5.80843 5.91346 6.03509 6.24768 6.40570 6.51500 6.73669 6.85447 7.38448 7.90054 8.04679 8.12048 8.95186 10.29998 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.043770 B = 0.005896 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.559591 B = 4747.819129 C = 5097.908691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.390 5.390 3 C 0.247 3.753 4 N -0.532 5.532 5 C 0.225 3.775 6 C 0.223 3.777 7 N -1.130 6.130 8 S 2.717 3.283 9 O -1.004 7.004 10 O -1.004 7.004 11 C -1.019 5.019 12 H 0.105 0.895 13 C 0.133 3.867 14 N -0.846 5.846 15 Si 0.921 3.079 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.262 1.262 19 N -0.301 5.301 20 H 0.078 0.922 21 H 0.091 0.909 22 H 0.091 0.909 23 H 0.219 0.781 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.404 0.596 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.334 11.109 -4.844 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.182 5.182 3 C -0.050 4.050 4 N -0.259 5.259 5 C -0.059 4.059 6 C 0.093 3.907 7 N -0.885 5.885 8 S 2.816 3.184 9 O -0.994 6.994 10 O -0.994 6.994 11 C -1.153 5.153 12 H 0.123 0.877 13 C -0.085 4.085 14 N -0.476 5.476 15 Si 0.745 3.255 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.186 1.186 19 N -0.130 5.130 20 H 0.097 0.903 21 H 0.110 0.890 22 H 0.110 0.890 23 H 0.235 0.765 24 H 0.108 0.892 25 H 0.116 0.884 26 H 0.234 0.766 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.404 9.470 -4.464 17.008 hybrid contribution 0.654 1.252 -0.382 1.463 sum -12.749 10.722 -4.845 17.349 Atomic orbital electron populations 1.21918 0.73919 1.04890 1.03710 1.50475 1.08090 1.04623 1.54987 1.26055 0.85934 0.95456 0.97529 1.70453 1.20344 1.11191 1.23902 1.24449 0.93769 0.89683 0.97957 1.19275 0.88853 0.97327 0.85242 1.56000 1.63406 1.57611 1.11460 1.00411 0.73607 0.71066 0.73272 1.93377 1.86528 1.86170 1.33355 1.93362 1.83037 1.48215 1.74767 1.30556 1.16510 1.16336 1.51896 0.87698 1.24752 1.00366 0.92454 0.90954 1.69902 1.33280 1.09572 1.34830 0.86150 0.80397 0.78904 0.80008 1.19251 1.20065 1.18573 1.78162 1.01737 1.07456 1.25622 0.90312 0.88992 0.89025 0.76520 0.89164 0.88376 0.76585 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.53 59.84 0.69 1.28 15 2 N -0.39 -4.55 4.04 -69.44 -0.28 -4.83 15 3 C 0.25 2.73 12.66 -90.65 -1.15 1.58 15 4 N -0.53 -8.27 11.19 -11.97 -0.13 -8.41 15 5 C 0.23 3.91 7.54 -156.85 -1.18 2.72 15 6 C 0.22 4.21 6.84 -5.19 -0.04 4.18 15 7 N -1.13 -24.01 5.99 -11.65 -0.07 -24.08 15 8 S 2.72 73.52 5.02 -107.50 -0.54 72.98 15 9 O -1.00 -30.03 18.02 -57.17 -1.03 -31.07 15 10 O -1.00 -29.69 17.49 -57.17 -1.00 -30.69 15 11 C -1.02 -28.31 9.72 30.60 0.30 -28.01 15 12 H 0.10 2.65 7.81 -52.49 -0.41 2.24 15 13 C 0.13 3.74 5.46 -17.82 -0.10 3.64 15 14 N -0.85 -25.16 13.19 55.43 0.73 -24.43 15 15 Si 0.92 20.82 29.54 -169.99 -5.02 15.80 15 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 18 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 19 N -0.30 -4.97 12.70 32.42 0.41 -4.56 15 20 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 15 21 H 0.09 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 15 23 H 0.22 1.16 8.06 -52.49 -0.42 0.74 15 24 H 0.09 1.58 8.14 -51.93 -0.42 1.16 15 25 H 0.10 1.87 7.75 -51.93 -0.40 1.47 15 26 H 0.40 7.87 8.64 -34.48 -0.30 7.57 15 27 H 0.29 7.75 8.31 -40.82 -0.34 7.41 15 LS Contribution 265.39 15.07 4.00 4.00 Total: -1.00 -38.93 265.39 -6.77 -45.70 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -2.36 Total: 4.21 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -1.48 Total: -14.62 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: 0.66 Total: -66.31 kcal Atomic # 8 Polarization: -59.73 SS G_CDS: -2.03 Total: -61.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 73.52 SS G_CDS: -0.54 Total: 72.98 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -38.93 -6.77 -45.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218912188.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.380 kcal (2) G-P(sol) polarization free energy of solvation -38.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds