Wall clock time and date at job start Mon Mar 30 2020 03:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34428 * 126.81994 * 2 1 4 4 N 1.30836 * 108.07404 * 180.02562 * 3 2 1 5 5 C 1.33239 * 109.82931 * 359.97438 * 4 3 2 6 6 C 1.50704 * 125.52626 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47108 * 90.02299 * 6 5 4 8 8 S 1.65608 * 119.99652 * 164.99992 * 7 6 5 9 9 O 1.42104 * 106.39724 * 178.54027 * 8 7 6 10 10 O 1.42097 * 106.40199 * 311.45938 * 8 7 6 11 11 C 1.76195 * 107.21632 * 65.00196 * 8 7 6 12 12 H 1.08001 * 120.00866 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99874 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00033 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00076 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47022 * 90.00022 * 15 13 11 17 17 H 1.48503 * 109.47301 * 209.99571 * 15 13 11 18 18 H 1.48496 * 109.47405 * 329.99823 * 15 13 11 19 19 N 1.30711 * 108.94971 * 0.26466 * 5 4 3 20 20 H 1.08997 * 109.47248 * 89.99900 * 1 2 3 21 21 H 1.09001 * 109.47249 * 209.99974 * 1 2 3 22 22 H 1.09002 * 109.47040 * 329.99568 * 1 2 3 23 23 H 1.07999 * 125.96454 * 359.97438 * 3 2 1 24 24 H 1.09005 * 109.46813 * 330.02621 * 6 5 4 25 25 H 1.09000 * 109.47056 * 210.02987 * 6 5 4 26 26 H 0.96997 * 120.00126 * 344.99915 * 7 6 5 27 27 H 0.96997 * 119.99891 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2706 1.0761 0.0000 4 7 3.5095 0.6557 -0.0006 5 6 3.5347 -0.6765 -0.0004 6 6 4.7776 -1.5289 -0.0003 7 7 5.1801 -1.8053 1.3809 8 16 6.2748 -3.0063 1.6997 9 8 6.4782 -3.0008 3.1061 10 8 5.8345 -4.1513 0.9826 11 6 7.8057 -2.5227 0.9736 12 1 7.8794 -1.5851 0.4428 13 6 8.9096 -3.3414 1.0831 14 7 8.8202 -4.4831 1.7299 15 14 10.5325 -2.8291 0.3127 16 1 11.3231 -2.0480 1.2976 17 1 11.2951 -4.0394 -0.0859 18 1 10.2693 -1.9928 -0.8857 19 7 2.3067 -1.1243 -0.0054 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.9509 2.1077 -0.0004 24 1 5.5807 -1.0002 -0.5139 25 1 4.5740 -2.4682 -0.5145 26 1 4.8054 -1.2849 2.1087 27 1 9.5969 -5.0588 1.8072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218912188.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:44 Heat of formation + Delta-G solvation = -31.035990 kcal Electronic energy + Delta-G solvation = -15577.276167 eV Core-core repulsion = 12690.487896 eV Total energy + Delta-G solvation = -2886.788271 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.08835 -37.45765 -36.60401 -36.15431 -35.16234 -34.51505 -32.25881 -28.91578 -28.23951 -26.50574 -22.98988 -21.80874 -21.01454 -19.40696 -18.40874 -17.91155 -17.18926 -17.00114 -16.52376 -16.11427 -15.86047 -15.37993 -14.71033 -14.17221 -13.99392 -13.91473 -13.72149 -13.25649 -12.97831 -12.71902 -12.53355 -12.50667 -12.44069 -12.25908 -11.21809 -11.10913 -11.01046 -10.88647 -10.53707 -10.31068 -8.73151 -7.46308 0.21007 0.67045 1.37850 1.38799 1.47211 1.55427 1.82362 2.25341 2.60840 3.01140 3.09207 3.50102 3.72596 3.99247 4.25375 4.44043 4.46964 4.47737 4.72095 4.75935 4.94344 5.21474 5.28311 5.31913 5.93141 5.96776 6.20669 6.80687 7.07051 8.23907 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.043770 B = 0.005896 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.559591 B = 4747.819129 C = 5097.908691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.384 5.384 3 C 0.264 3.736 4 N -0.567 5.567 5 C 0.208 3.792 6 C 0.218 3.782 7 N -1.116 6.116 8 S 2.724 3.276 9 O -1.041 7.041 10 O -1.039 7.039 11 C -1.037 5.037 12 H 0.125 0.875 13 C 0.069 3.931 14 N -0.895 5.895 15 Si 0.994 3.006 16 H -0.256 1.256 17 H -0.263 1.263 18 H -0.245 1.245 19 N -0.338 5.338 20 H 0.097 0.903 21 H 0.085 0.915 22 H 0.134 0.866 23 H 0.276 0.724 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.412 0.588 27 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 13.606 -5.914 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.175 5.175 3 C -0.032 4.032 4 N -0.295 5.295 5 C -0.076 4.076 6 C 0.089 3.911 7 N -0.874 5.874 8 S 2.825 3.175 9 O -1.031 7.031 10 O -1.028 7.028 11 C -1.171 5.171 12 H 0.143 0.857 13 C -0.144 4.144 14 N -0.526 5.526 15 Si 0.811 3.189 16 H -0.180 1.180 17 H -0.187 1.187 18 H -0.168 1.168 19 N -0.169 5.169 20 H 0.115 0.885 21 H 0.104 0.896 22 H 0.153 0.847 23 H 0.291 0.709 24 H 0.119 0.881 25 H 0.106 0.894 26 H 0.245 0.755 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.993 11.974 -5.523 19.227 hybrid contribution 0.593 0.559 -0.056 0.817 sum -13.400 12.533 -5.580 19.177 Atomic orbital electron populations 1.22415 0.70641 1.06722 1.05513 1.50773 1.09714 1.03476 1.53565 1.27080 0.84426 0.97205 0.94462 1.70370 1.23192 1.10266 1.25683 1.23946 0.93245 0.90447 0.99979 1.19307 0.90707 0.97657 0.83394 1.55376 1.62430 1.56471 1.13139 0.99849 0.74093 0.71315 0.72264 1.93315 1.87305 1.87045 1.35475 1.93309 1.83705 1.50708 1.75115 1.30863 1.16806 1.17298 1.52130 0.85699 1.26055 1.04976 0.92170 0.91170 1.69996 1.35075 1.11107 1.36420 0.85082 0.74886 0.79262 0.79629 1.17981 1.18721 1.16838 1.78023 1.02128 1.10376 1.26346 0.88492 0.89645 0.84745 0.70864 0.88080 0.89444 0.75533 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.53 127.77 1.47 2.22 15 2 N -0.38 -7.97 4.04 -373.62 -1.51 -9.48 15 3 C 0.26 4.93 12.66 180.36 2.28 7.22 15 4 N -0.57 -16.71 11.19 -191.80 -2.15 -18.86 15 5 C 0.21 7.14 7.54 138.63 1.04 8.19 15 6 C 0.22 8.39 6.84 85.64 0.59 8.98 15 7 N -1.12 -48.40 5.99 -190.78 -1.14 -49.54 15 8 S 2.72 151.56 5.02 -56.49 -0.28 151.27 15 9 O -1.04 -64.28 18.02 -128.00 -2.31 -66.59 15 10 O -1.04 -63.70 17.49 -128.00 -2.24 -65.94 15 11 C -1.04 -57.87 9.72 67.73 0.66 -57.21 15 12 H 0.12 6.23 7.81 -2.91 -0.02 6.21 15 13 C 0.07 3.89 5.46 84.65 0.46 4.35 15 14 N -0.89 -54.09 13.19 21.45 0.28 -53.81 15 15 Si 0.99 41.71 29.54 68.60 2.03 43.74 15 16 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 17 H -0.26 -10.39 7.11 99.48 0.71 -9.69 15 18 H -0.25 -9.56 7.11 99.48 0.71 -8.86 15 19 N -0.34 -10.98 12.70 -51.33 -0.65 -11.64 15 20 H 0.10 0.54 8.14 -2.39 -0.02 0.52 15 21 H 0.08 0.90 8.14 -2.39 -0.02 0.88 15 22 H 0.13 0.05 8.14 -2.39 -0.02 0.03 15 23 H 0.28 1.41 8.06 -2.91 -0.02 1.38 15 24 H 0.10 3.58 8.14 -2.38 -0.02 3.56 15 25 H 0.09 3.48 7.75 -2.39 -0.02 3.47 15 26 H 0.41 16.38 8.64 -96.74 -0.84 15.55 15 27 H 0.30 16.20 8.31 -92.71 -0.77 15.43 15 Total: -1.00 -86.99 265.39 -1.09 -88.08 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.37 Total: 19.02 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 6.51 Total: -26.26 kcal Atomic # 7 Polarization: -138.16 SS G_CDS: -5.17 Total: -143.32 kcal Atomic # 8 Polarization: -127.99 SS G_CDS: -4.54 Total: -132.53 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 151.56 SS G_CDS: -0.28 Total: 151.27 kcal Total: -86.99 -1.09 -88.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218912188.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.044 kcal (2) G-P(sol) polarization free energy of solvation -86.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds