Wall clock time and date at job start Mon Mar 30 2020 03:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47518 * 2 1 4 4 N 1.46502 * 109.46911 * 119.99926 * 2 1 3 5 5 S 1.65595 * 120.00126 * 265.00084 * 4 2 1 6 6 O 1.42097 * 106.40597 * 178.53871 * 5 4 2 7 7 O 1.42101 * 106.40138 * 311.46057 * 5 4 2 8 8 C 1.76201 * 107.21965 * 64.99643 * 5 4 2 9 9 H 1.07999 * 119.99765 * 0.02562 * 8 5 4 10 10 C 1.37875 * 120.00141 * 179.97438 * 8 5 4 11 11 N 1.31515 * 120.00012 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00008 * 180.02562 * 10 8 5 13 13 H 1.48500 * 109.46756 * 90.00674 * 12 10 8 14 14 H 1.48499 * 109.47214 * 210.00336 * 12 10 8 15 15 H 1.48494 * 109.47335 * 330.00459 * 12 10 8 16 16 C 1.50701 * 109.47111 * 239.99740 * 2 1 3 17 17 N 1.30520 * 126.34696 * 265.04572 * 16 2 1 18 18 N 1.28598 * 109.67311 * 179.97438 * 17 16 2 19 19 C 1.30517 * 109.67182 * 359.71854 * 18 17 16 20 20 N 1.35494 * 107.30882 * 0.44455 * 19 18 17 21 21 H 0.97001 * 126.98501 * 179.84144 * 20 19 18 22 22 H 1.08994 * 109.47377 * 300.00324 * 1 2 3 23 23 H 1.09005 * 109.46986 * 60.00501 * 1 2 3 24 24 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 25 25 H 0.97001 * 119.99799 * 84.99641 * 4 2 1 26 26 H 0.97000 * 120.00397 * 179.97438 * 11 10 8 27 27 H 1.08002 * 126.34715 * 180.29612 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4121 0.1771 2.5505 6 8 2.8123 -0.7697 3.5316 7 8 3.2436 1.2443 2.1156 8 6 0.9274 0.9148 3.1474 9 1 -0.0047 0.7488 2.6279 10 6 0.9555 1.7031 4.2782 11 7 2.0906 1.9049 4.9111 12 14 -0.6186 2.4846 4.9113 13 1 -1.2770 1.5631 5.8719 14 1 -0.2966 3.7636 5.5937 15 1 -1.5335 2.7482 3.7718 16 6 2.0324 -0.7105 -1.2304 17 7 2.3758 -1.9670 -1.3121 18 7 2.7559 -2.2349 -2.5111 19 6 2.6665 -1.1629 -3.2502 20 7 2.2106 -0.1633 -2.4571 21 1 2.0420 0.7562 -2.7160 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 2.1109 -1.6562 1.1949 26 1 2.1105 2.4598 5.7064 27 1 2.9128 -1.0861 -4.2989 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226503366.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:35 Heat of formation + Delta-G solvation = -49.652953 kcal Electronic energy + Delta-G solvation = -16076.408007 eV Core-core repulsion = 13188.812443 eV Total energy + Delta-G solvation = -2887.595563 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.09554 -37.66952 -37.14766 -36.15081 -35.15965 -34.70500 -31.60265 -30.17874 -28.20952 -25.07664 -23.65884 -22.07628 -21.02464 -19.59790 -19.26653 -18.20507 -17.27609 -16.92326 -16.80186 -15.97212 -15.76231 -15.38076 -15.05758 -14.37144 -13.97414 -13.72136 -12.97538 -12.91009 -12.72339 -12.53334 -12.52008 -12.39248 -12.30301 -12.14826 -11.80376 -11.40538 -11.21099 -11.03435 -10.47926 -10.19721 -8.71744 -7.44817 0.28218 0.86733 1.39664 1.40805 1.56217 1.87894 1.88862 2.25159 2.63225 2.85367 3.30221 3.70138 3.89083 4.10266 4.16661 4.33728 4.46396 4.52569 4.67172 4.83400 5.06989 5.21135 5.23396 5.44512 5.99604 6.26278 6.29736 6.82723 7.72570 8.25249 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.040817 B = 0.007195 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.822666 B = 3890.409526 C = 4233.084303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.237 3.763 3 H 0.110 0.890 4 N -1.113 6.113 5 S 2.717 3.283 6 O -1.046 7.046 7 O -1.041 7.041 8 C -1.030 5.030 9 H 0.136 0.864 10 C 0.070 3.930 11 N -0.896 5.896 12 Si 0.992 3.008 13 H -0.261 1.261 14 H -0.268 1.268 15 H -0.238 1.238 16 C 0.176 3.824 17 N -0.328 5.328 18 N -0.351 5.351 19 C 0.179 3.821 20 N -0.562 5.562 21 H 0.451 0.549 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.417 0.583 26 H 0.298 0.702 27 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 1.782 -15.403 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.126 3.874 3 H 0.128 0.872 4 N -0.871 5.871 5 S 2.818 3.182 6 O -1.036 7.036 7 O -1.031 7.031 8 C -1.165 5.165 9 H 0.153 0.847 10 C -0.143 4.143 11 N -0.528 5.528 12 Si 0.810 3.190 13 H -0.185 1.185 14 H -0.192 1.192 15 H -0.161 1.161 16 C -0.097 4.097 17 N -0.168 5.168 18 N -0.191 5.191 19 C -0.111 4.111 20 N -0.177 5.177 21 H 0.295 0.705 22 H 0.099 0.901 23 H 0.116 0.884 24 H 0.085 0.915 25 H 0.251 0.749 26 H 0.108 0.892 27 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -5.098 0.508 -14.502 15.380 hybrid contribution -0.939 1.557 0.066 1.819 sum -6.037 2.065 -14.436 15.783 Atomic orbital electron populations 1.22443 0.91410 1.03978 1.04869 1.19066 0.95749 0.94627 0.77927 0.87209 1.55452 1.84634 1.19773 1.27199 1.00051 0.75956 0.71756 0.70407 1.93319 1.85173 1.65219 1.59927 1.93299 1.70285 1.57114 1.82393 1.30932 1.17036 1.45483 1.23009 0.84659 1.26043 1.01923 0.92603 0.93703 1.70012 1.29177 1.34775 1.18817 0.85094 0.76571 0.77752 0.79536 1.18511 1.19207 1.16065 1.24925 1.03244 0.92095 0.89443 1.74084 1.16741 1.12566 1.13420 1.74162 1.20522 1.26162 0.98211 1.27474 0.98968 0.83234 1.01445 1.43980 1.50190 1.15376 1.08147 0.70535 0.90149 0.88375 0.91490 0.74854 0.89195 0.70869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 9.50 71.98 0.68 -3.60 15 2 C 0.24 7.51 3.45 44.25 0.15 7.66 15 3 H 0.11 3.42 7.50 -2.39 -0.02 3.40 15 4 N -1.11 -45.19 5.45 -172.52 -0.94 -46.13 15 5 S 2.72 144.13 5.00 -56.49 -0.28 143.85 15 6 O -1.05 -63.82 18.02 -128.00 -2.31 -66.12 15 7 O -1.04 -60.44 17.36 -128.00 -2.22 -62.67 15 8 C -1.03 -53.24 9.57 67.73 0.65 -52.60 15 9 H 0.14 5.99 5.62 -2.91 -0.02 5.97 15 10 C 0.07 3.73 5.46 84.65 0.46 4.19 15 11 N -0.90 -52.30 13.19 21.45 0.28 -52.02 15 12 Si 0.99 39.07 29.54 68.60 2.03 41.10 15 13 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 14 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 15 H -0.24 -8.36 7.11 99.48 0.71 -7.66 15 16 C 0.18 5.10 7.25 137.98 1.00 6.10 15 17 N -0.33 -11.41 11.60 -50.15 -0.58 -11.99 15 18 N -0.35 -10.62 12.21 -59.99 -0.73 -11.35 15 19 C 0.18 3.23 13.19 180.11 2.37 5.60 15 20 N -0.56 -10.19 6.20 -189.86 -1.18 -11.37 15 21 H 0.45 4.09 8.96 -92.71 -0.83 3.26 15 22 H 0.08 2.25 5.74 -2.39 -0.01 2.24 15 23 H 0.10 1.72 8.14 -2.38 -0.02 1.70 15 24 H 0.07 1.72 8.14 -2.38 -0.02 1.70 15 25 H 0.42 16.52 8.36 -96.75 -0.81 15.72 15 26 H 0.30 15.65 8.31 -92.71 -0.77 14.88 15 27 H 0.28 1.42 8.06 -2.91 -0.02 1.40 15 Total: -1.00 -84.32 257.14 -1.01 -85.32 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -0.40 Total: 24.01 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 5.32 Total: -32.63 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -3.15 Total: -132.86 kcal Atomic # 8 Polarization: -124.26 SS G_CDS: -4.53 Total: -128.79 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Atomic # 16 Polarization: 144.13 SS G_CDS: -0.28 Total: 143.85 kcal Total: -84.32 -1.01 -85.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226503366.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.671 kcal (2) G-P(sol) polarization free energy of solvation -84.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds