Wall clock time and date at job start Mon Mar 30 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81398 * 102.99823 * 2 1 4 4 C 1.50702 * 109.47137 * 179.97438 * 3 2 1 5 5 N 1.29946 * 126.28406 * 89.97530 * 4 3 2 6 6 O 1.21301 * 110.24604 * 179.97438 * 5 4 3 7 7 C 1.33636 * 109.81535 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.55292 * 179.97438 * 7 6 5 9 9 S 1.80998 * 109.47116 * 270.02365 * 8 7 6 10 10 C 1.76199 * 100.00013 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00250 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00102 * 179.72368 * 10 9 8 13 13 N 1.31634 * 120.00298 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99861 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47644 * 89.99884 * 14 12 10 16 16 H 1.48506 * 109.47143 * 209.99830 * 14 12 10 17 17 H 1.48501 * 109.47120 * 329.99545 * 14 12 10 18 18 N 1.31133 * 106.89915 * 0.22073 * 7 6 5 19 19 H 1.08998 * 109.47086 * 59.99907 * 1 2 3 20 20 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47028 * 299.99742 * 1 2 3 22 22 H 1.09004 * 109.47422 * 59.99772 * 3 2 1 23 23 H 1.08997 * 109.47123 * 300.00408 * 3 2 1 24 24 H 1.09001 * 109.47434 * 150.02127 * 8 7 6 25 25 H 1.08999 * 109.47072 * 30.02606 * 8 7 6 26 26 H 0.96995 * 120.00138 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 0.0006 5 7 4.4841 2.0235 -1.0465 6 8 5.6423 2.1557 -0.7109 7 6 5.7291 2.1661 0.6226 8 6 6.9877 2.3093 1.4389 9 16 7.6844 0.6711 1.7659 10 6 9.1036 1.1244 2.7067 11 1 9.3056 2.1653 2.9119 12 6 9.9586 0.1434 3.1895 13 7 11.0191 0.4820 3.8919 14 14 9.6050 -1.6575 2.8412 15 1 10.2664 -2.0556 1.5726 16 1 10.1287 -2.4891 3.9545 17 1 8.1389 -1.8596 2.7197 18 7 4.5105 2.0226 1.0851 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8031 2.2372 0.8900 23 1 1.8031 2.2371 -0.8899 24 1 6.7541 2.8000 2.3838 25 1 7.7121 2.9088 0.8876 26 1 11.6167 -0.2036 4.2289 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230995677.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:45 Heat of formation + Delta-G solvation = 63.610570 kcal Electronic energy + Delta-G solvation = -12889.919296 eV Core-core repulsion = 10417.695327 eV Total energy + Delta-G solvation = -2472.223968 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.024 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.45544 -36.00471 -33.69096 -32.56275 -29.99443 -29.04171 -28.45753 -25.76295 -23.53352 -21.61920 -18.17118 -17.99193 -17.19297 -16.38856 -15.20757 -14.93489 -14.61735 -14.45483 -14.21572 -14.06466 -13.31688 -13.14282 -12.92426 -12.74468 -12.07534 -11.67391 -11.34638 -11.11099 -11.02979 -10.87324 -10.31584 -10.02376 -9.59532 -9.12379 -8.77969 -7.92471 -7.14816 -6.39768 -4.16652 0.88450 1.35927 2.17855 2.47493 2.86722 3.01679 3.24618 3.39636 3.43484 3.53471 3.97636 4.21352 4.56217 4.79766 4.83181 4.84913 4.91399 4.99492 5.27644 5.39096 5.53990 5.72676 5.99001 6.08518 7.82974 8.25751 8.31897 9.04206 10.68929 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.034998 B = 0.005289 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.850158 B = 5292.342727 C = 5812.261130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.222 6.222 3 C 0.004 3.996 4 C 0.174 3.826 5 N -0.374 5.374 6 O 0.086 5.914 7 C 0.224 3.776 8 C -0.013 4.013 9 S -0.162 6.162 10 C -0.513 4.513 11 H 0.096 0.904 12 C 0.098 3.902 13 N -0.873 5.873 14 Si 0.855 3.145 15 H -0.266 1.266 16 H -0.271 1.271 17 H -0.237 1.237 18 N -0.467 5.467 19 H 0.078 0.922 20 H 0.105 0.895 21 H 0.080 0.920 22 H 0.113 0.887 23 H 0.107 0.893 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.366 2.363 -7.197 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.001 5.999 3 C -0.145 4.145 4 C -0.099 4.099 5 N -0.083 5.083 6 O 0.025 5.975 7 C 0.004 3.996 8 C -0.162 4.162 9 S 0.063 5.937 10 C -0.660 4.660 11 H 0.114 0.886 12 C -0.111 4.111 13 N -0.509 5.509 14 Si 0.680 3.320 15 H -0.191 1.191 16 H -0.196 1.196 17 H -0.161 1.161 18 N -0.202 5.202 19 H 0.097 0.903 20 H 0.124 0.876 21 H 0.099 0.901 22 H 0.131 0.869 23 H 0.125 0.875 24 H 0.137 0.863 25 H 0.129 0.871 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.537 0.370 -7.900 19.238 hybrid contribution -0.138 1.377 0.429 1.449 sum -17.675 1.747 -7.471 19.269 Atomic orbital electron populations 1.23453 0.94081 1.06900 1.05092 1.87497 1.06884 1.07485 1.98028 1.21375 0.88346 0.97535 1.07249 1.24628 0.98018 1.02657 0.84573 1.74600 0.89890 1.20169 1.23611 1.85313 1.22314 1.64829 1.25001 1.28240 0.96134 0.93720 0.81527 1.21730 0.89821 1.04632 0.99985 1.84729 1.32794 1.04410 1.71720 1.22079 1.07604 0.97936 1.38389 0.88598 1.24693 0.93784 0.99335 0.93311 1.69916 1.12729 1.34577 1.33653 0.86769 0.81615 0.84504 0.79143 1.19057 1.19640 1.16073 1.71928 0.99792 1.20109 1.28370 0.90319 0.87632 0.90127 0.86856 0.87464 0.86276 0.87081 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 10.76 101.05 1.09 0.16 15 2 S -0.22 -2.78 22.36 -107.50 -2.40 -5.18 15 3 C 0.00 0.05 6.57 36.01 0.24 0.28 15 4 C 0.17 2.79 7.48 -156.37 -1.17 1.62 15 5 N -0.37 -6.36 12.16 30.90 0.38 -5.98 15 6 O 0.09 1.51 11.31 18.12 0.20 1.71 15 7 C 0.22 3.99 7.77 -13.06 -0.10 3.88 15 8 C -0.01 -0.24 6.30 36.00 0.23 -0.01 15 9 S -0.16 -3.79 19.39 -107.50 -2.08 -5.87 15 10 C -0.51 -13.92 10.04 30.94 0.31 -13.61 15 11 H 0.10 2.71 8.03 -52.49 -0.42 2.28 15 12 C 0.10 2.75 5.50 -17.43 -0.10 2.65 15 13 N -0.87 -25.32 13.97 55.49 0.78 -24.54 15 14 Si 0.86 20.76 27.74 -169.99 -4.72 16.05 15 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 17 H -0.24 -5.71 6.74 56.52 0.38 -5.33 15 18 N -0.47 -8.34 11.55 -9.87 -0.11 -8.45 15 19 H 0.08 0.46 8.14 -51.93 -0.42 0.04 15 20 H 0.11 0.67 8.14 -51.92 -0.42 0.25 15 21 H 0.08 0.50 8.14 -51.92 -0.42 0.08 15 22 H 0.11 1.13 8.14 -51.92 -0.42 0.71 15 23 H 0.11 1.02 8.14 -51.93 -0.42 0.59 15 24 H 0.12 2.07 8.14 -51.92 -0.42 1.65 15 25 H 0.11 1.82 8.14 -51.92 -0.42 1.39 15 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 LS Contribution 267.17 15.07 4.03 4.03 Total: -1.00 -30.57 267.17 -5.98 -36.54 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -2.54 Total: -3.28 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 0.49 Total: -5.02 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 1.04 Total: -38.98 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.20 Total: 1.71 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.72 Total: 16.05 kcal Atomic # 16 Polarization: -6.56 SS G_CDS: -4.49 Total: -11.05 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.57 -5.98 -36.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230995677.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.154 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds