Wall clock time and date at job start Mon Mar 30 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81398 * 102.99823 * 2 1 4 4 C 1.50702 * 109.47137 * 179.97438 * 3 2 1 5 5 N 1.29946 * 126.28406 * 89.97530 * 4 3 2 6 6 O 1.21301 * 110.24604 * 179.97438 * 5 4 3 7 7 C 1.33636 * 109.81535 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.55292 * 179.97438 * 7 6 5 9 9 S 1.80998 * 109.47116 * 270.02365 * 8 7 6 10 10 C 1.76199 * 100.00013 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00250 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00102 * 179.72368 * 10 9 8 13 13 N 1.31634 * 120.00298 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99861 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47644 * 89.99884 * 14 12 10 16 16 H 1.48506 * 109.47143 * 209.99830 * 14 12 10 17 17 H 1.48501 * 109.47120 * 329.99545 * 14 12 10 18 18 N 1.31133 * 106.89915 * 0.22073 * 7 6 5 19 19 H 1.08998 * 109.47086 * 59.99907 * 1 2 3 20 20 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47028 * 299.99742 * 1 2 3 22 22 H 1.09004 * 109.47422 * 59.99772 * 3 2 1 23 23 H 1.08997 * 109.47123 * 300.00408 * 3 2 1 24 24 H 1.09001 * 109.47434 * 150.02127 * 8 7 6 25 25 H 1.08999 * 109.47072 * 30.02606 * 8 7 6 26 26 H 0.96995 * 120.00138 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 0.0006 5 7 4.4841 2.0235 -1.0465 6 8 5.6423 2.1557 -0.7109 7 6 5.7291 2.1661 0.6226 8 6 6.9877 2.3093 1.4389 9 16 7.6844 0.6711 1.7659 10 6 9.1036 1.1244 2.7067 11 1 9.3056 2.1653 2.9119 12 6 9.9586 0.1434 3.1895 13 7 11.0191 0.4820 3.8919 14 14 9.6050 -1.6575 2.8412 15 1 10.2664 -2.0556 1.5726 16 1 10.1287 -2.4891 3.9545 17 1 8.1389 -1.8596 2.7197 18 7 4.5105 2.0226 1.0851 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8031 2.2372 0.8900 23 1 1.8031 2.2371 -0.8899 24 1 6.7541 2.8000 2.3838 25 1 7.7121 2.9088 0.8876 26 1 11.6167 -0.2036 4.2289 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230995677.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:45 Heat of formation + Delta-G solvation = 42.626583 kcal Electronic energy + Delta-G solvation = -12890.829230 eV Core-core repulsion = 10417.695327 eV Total energy + Delta-G solvation = -2473.133902 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.024 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.77817 -37.30719 -35.02607 -34.68346 -31.03886 -30.02289 -29.51642 -27.88450 -24.85038 -22.93989 -19.97511 -19.42716 -18.59976 -17.38908 -17.15407 -16.42349 -16.07891 -15.74148 -15.00343 -14.97943 -14.90077 -14.60926 -13.89303 -13.60647 -13.48360 -13.39534 -13.07209 -13.01216 -12.52141 -12.24247 -11.94030 -11.33406 -11.18068 -10.96260 -10.59514 -9.09216 -8.84587 -8.51796 -6.26603 -0.32105 0.16774 1.03590 1.32237 1.32888 1.46907 1.51136 1.54282 1.74988 2.22414 2.35020 2.59116 2.79421 2.87116 3.64254 3.97246 4.06204 4.24702 4.35232 4.35681 4.44010 4.60390 4.74378 4.89072 5.70982 6.14031 6.91657 6.92446 8.60126 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.034998 B = 0.005289 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.850158 B = 5292.342727 C = 5812.261130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 S -0.301 6.301 3 C 0.013 3.987 4 C 0.179 3.821 5 N -0.384 5.384 6 O 0.080 5.920 7 C 0.220 3.780 8 C 0.003 3.997 9 S -0.181 6.181 10 C -0.519 4.519 11 H 0.073 0.927 12 C 0.049 3.951 13 N -0.912 5.912 14 Si 0.910 3.090 15 H -0.261 1.261 16 H -0.261 1.261 17 H -0.235 1.235 18 N -0.480 5.480 19 H 0.097 0.903 20 H 0.115 0.885 21 H 0.095 0.905 22 H 0.132 0.868 23 H 0.132 0.868 24 H 0.129 0.871 25 H 0.131 0.869 26 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.562 2.165 -7.884 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 S -0.078 6.078 3 C -0.135 4.135 4 C -0.095 4.095 5 N -0.094 5.094 6 O 0.022 5.978 7 C -0.001 4.001 8 C -0.146 4.146 9 S 0.045 5.955 10 C -0.666 4.666 11 H 0.091 0.909 12 C -0.158 4.158 13 N -0.549 5.549 14 Si 0.732 3.268 15 H -0.185 1.185 16 H -0.185 1.185 17 H -0.159 1.159 18 N -0.215 5.215 19 H 0.116 0.884 20 H 0.134 0.866 21 H 0.114 0.886 22 H 0.151 0.849 23 H 0.151 0.849 24 H 0.147 0.853 25 H 0.149 0.851 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.729 0.180 -8.596 21.522 hybrid contribution 0.398 1.537 0.601 1.698 sum -19.332 1.717 -7.995 20.990 Atomic orbital electron populations 1.23522 0.88747 1.08101 1.06802 1.87741 1.12818 1.08977 1.98284 1.21557 0.85646 0.96874 1.09441 1.25330 0.99658 1.00890 0.83583 1.74596 0.89813 1.20936 1.24038 1.85304 1.22792 1.65044 1.24708 1.28006 0.95959 0.94375 0.81761 1.21631 0.90416 1.01466 1.01086 1.84523 1.31314 1.08680 1.71000 1.22230 1.09021 0.97016 1.38362 0.90934 1.25517 0.93695 1.03281 0.93270 1.69997 1.13844 1.36079 1.34988 0.85928 0.81488 0.79948 0.79389 1.18540 1.18508 1.15929 1.71941 1.00088 1.20182 1.29336 0.88417 0.86615 0.88581 0.84936 0.84949 0.85279 0.85058 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.76 113.37 1.22 0.04 15 2 S -0.30 -6.98 22.36 -56.49 -1.26 -8.25 15 3 C 0.01 0.28 6.57 71.24 0.47 0.75 15 4 C 0.18 5.39 7.48 138.46 1.04 6.43 15 5 N -0.38 -12.50 12.16 -60.34 -0.73 -13.24 15 6 O 0.08 2.70 11.31 74.90 0.85 3.55 15 7 C 0.22 7.54 7.77 88.38 0.69 8.23 15 8 C 0.00 0.10 6.30 71.24 0.45 0.54 15 9 S -0.18 -8.35 19.39 -56.49 -1.10 -9.45 15 10 C -0.52 -28.37 10.04 67.95 0.68 -27.69 15 11 H 0.07 4.18 8.03 -2.91 -0.02 4.16 15 12 C 0.05 2.72 5.50 84.86 0.47 3.18 15 13 N -0.91 -53.47 13.97 21.65 0.30 -53.17 15 14 Si 0.91 42.67 27.74 68.60 1.90 44.57 15 15 H -0.26 -11.92 7.11 99.48 0.71 -11.21 15 16 H -0.26 -11.62 7.11 99.48 0.71 -10.91 15 17 H -0.24 -10.89 6.74 99.48 0.67 -10.22 15 18 N -0.48 -16.44 11.55 -303.23 -3.50 -19.94 15 19 H 0.10 0.78 8.14 -2.39 -0.02 0.76 15 20 H 0.12 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.10 0.83 8.14 -2.39 -0.02 0.81 15 22 H 0.13 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.13 2.08 8.14 -2.39 -0.02 2.06 15 24 H 0.13 4.35 8.14 -2.39 -0.02 4.34 15 25 H 0.13 4.13 8.14 -2.40 -0.02 4.11 15 26 H 0.28 15.11 8.31 -92.71 -0.77 14.34 15 Total: -1.00 -65.50 267.17 2.62 -62.88 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: 1.15 Total: 1.55 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 5.01 Total: -8.51 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -3.93 Total: -86.35 kcal Atomic # 8 Polarization: 2.70 SS G_CDS: 0.85 Total: 3.55 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.90 Total: 44.57 kcal Atomic # 16 Polarization: -15.33 SS G_CDS: -2.36 Total: -17.69 kcal Total: -65.50 2.62 -62.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230995677.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.505 kcal (2) G-P(sol) polarization free energy of solvation -65.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds