Wall clock time and date at job start Mon Mar 30 2020 03:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86796 * 120.00332 * 2 1 4 4 H 1.48504 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47346 * 300.00029 * 3 2 1 6 6 H 1.48495 * 109.47089 * 60.00260 * 3 2 1 7 7 C 1.38627 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00214 * 179.97438 * 7 2 1 9 9 O 1.34824 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.35764 * 116.99909 * 185.05628 * 9 7 2 11 11 C 1.38916 * 119.99948 * 354.45632 * 10 9 7 12 12 C 1.38004 * 119.99411 * 179.97438 * 11 10 9 13 13 C 1.38901 * 120.00397 * 359.97438 * 12 11 10 14 14 N 1.40155 * 120.00144 * 180.02562 * 13 12 11 15 15 C 1.38780 * 125.99422 * 180.02562 * 14 13 12 16 16 C 1.32899 * 107.89450 * 179.97438 * 15 14 13 17 17 N 1.38687 * 107.91855 * 0.02562 * 16 15 14 18 18 H 0.96996 * 125.97598 * 179.73936 * 17 16 15 19 19 C 1.34755 * 108.05082 * 359.97438 * 17 16 15 20 20 O 1.21788 * 125.93800 * 179.97438 * 19 17 16 21 21 C 1.38908 * 120.00164 * 0.27519 * 13 12 11 22 22 C 1.38000 * 119.99988 * 359.45159 * 21 13 12 23 23 H 0.97007 * 119.99620 * 359.97438 * 1 2 3 24 24 H 1.07991 * 120.00489 * 359.95554 * 11 10 9 25 25 H 1.08007 * 119.99249 * 180.02562 * 12 11 10 26 26 H 1.07994 * 126.05250 * 0.02562 * 15 14 13 27 27 H 1.07998 * 126.03677 * 179.97438 * 16 15 14 28 28 H 1.08001 * 119.99973 * 179.72791 * 21 13 12 29 29 H 1.07998 * 120.00230 * 180.24809 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.7099 1.3462 -0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8912 2.3963 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0701 -3.5044 0.1055 11 6 3.4576 -3.4377 0.0917 12 6 4.2049 -4.5928 0.2001 13 6 3.5699 -5.8219 0.3235 14 7 4.3290 -6.9949 0.4341 15 6 3.8269 -8.2823 0.5620 16 6 4.8581 -9.1172 0.6377 17 7 6.0216 -8.3665 0.5591 18 1 6.9268 -8.7133 0.5918 19 6 5.6745 -7.0703 0.4346 20 8 6.4432 -6.1305 0.3400 21 6 2.1825 -5.8892 0.3321 22 6 1.4350 -4.7337 0.2294 23 1 -0.4850 0.8401 0.0004 24 1 3.9513 -2.4821 -0.0041 25 1 5.2837 -4.5408 0.1897 26 1 2.7830 -8.5572 0.5935 27 1 4.8003 -10.1905 0.7429 28 1 1.6888 -6.8454 0.4237 29 1 0.3564 -4.7856 0.2402 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231930500.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:33 Heat of formation + Delta-G solvation = 0.848749 kcal Electronic energy + Delta-G solvation = -16737.774248 eV Core-core repulsion = 13820.464995 eV Total energy + Delta-G solvation = -2917.309253 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.43465 -40.75343 -38.46882 -38.03508 -35.19645 -34.15280 -32.00942 -30.40112 -29.25602 -27.34361 -24.60534 -24.07153 -22.18162 -21.73493 -19.92347 -19.57895 -18.71197 -17.64620 -17.31820 -16.58808 -16.24896 -15.77749 -15.57834 -15.54925 -15.29524 -14.73187 -14.28765 -13.97933 -13.78243 -13.57867 -13.26109 -12.94244 -12.74844 -12.57634 -12.12684 -11.74726 -11.60262 -10.99366 -10.76090 -9.96209 -9.29293 -8.50015 -8.39871 -6.16011 0.34739 0.43811 1.34726 1.39366 1.39945 1.50796 1.52436 1.86684 2.16302 2.76141 2.79806 3.11463 3.44729 3.84368 4.03790 4.27964 4.31345 4.42968 4.49892 4.75852 4.84604 4.87931 5.11036 5.14191 5.33323 5.48094 5.53627 5.65292 5.96779 6.00069 6.14222 6.54278 6.95181 7.27221 7.71951 8.72881 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.047889 B = 0.004997 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.548787 B = 5601.574719 C = 6172.161989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.017 4.017 3 Si 1.015 2.985 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.415 4.415 8 H 0.097 0.903 9 O -0.221 6.221 10 C 0.109 3.891 11 C -0.221 4.221 12 C -0.102 4.102 13 C 0.067 3.933 14 N -0.469 5.469 15 C -0.042 4.042 16 C 0.016 3.984 17 N -0.624 5.624 18 H 0.445 0.555 19 C 0.619 3.381 20 O -0.616 6.616 21 C -0.070 4.070 22 C -0.168 4.168 23 H 0.274 0.726 24 H 0.120 0.880 25 H 0.133 0.867 26 H 0.217 0.783 27 H 0.241 0.759 28 H 0.176 0.824 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -19.497 1.731 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.216 4.216 3 Si 0.835 3.165 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.114 0.886 9 O -0.127 6.127 10 C 0.058 3.942 11 C -0.240 4.240 12 C -0.122 4.122 13 C -0.025 4.025 14 N -0.181 5.181 15 C -0.163 4.163 16 C -0.106 4.106 17 N -0.268 5.268 18 H 0.289 0.711 19 C 0.321 3.679 20 O -0.499 6.499 21 C -0.089 4.089 22 C -0.188 4.188 23 H 0.083 0.917 24 H 0.138 0.862 25 H 0.151 0.849 26 H 0.233 0.767 27 H 0.257 0.743 28 H 0.193 0.807 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.923 -18.652 1.640 19.963 hybrid contribution 0.773 1.063 -0.059 1.315 sum 7.695 -17.590 1.581 19.265 Atomic orbital electron populations 1.70174 1.07769 1.28835 1.48427 1.26499 0.96868 1.02465 0.95739 0.84574 0.78046 0.75109 0.78776 1.18108 1.19061 1.19075 1.21807 0.92407 0.81554 1.53361 0.88567 1.83939 1.35450 1.12331 1.81007 1.19955 0.90869 0.88618 0.94749 1.21059 0.93438 0.98927 1.10613 1.21110 1.00845 0.90881 0.99376 1.17329 0.90876 0.83867 1.10449 1.42531 1.05884 1.06916 1.62804 1.22646 1.02601 0.79807 1.11199 1.22703 0.81431 1.00006 1.06506 1.43142 1.11236 1.05312 1.67106 0.71149 1.16610 0.82453 0.84819 0.84034 1.90936 1.55872 1.40886 1.62186 1.20667 0.89744 0.99062 0.99462 1.20367 1.00715 0.89070 1.08634 0.91667 0.86191 0.84901 0.76684 0.74254 0.80689 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.69 13.67 21.61 0.30 -55.39 15 2 C -0.02 -1.00 5.49 84.82 0.47 -0.53 15 3 Si 1.02 43.71 29.55 68.60 2.03 45.74 15 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 7 C -0.42 -24.53 9.48 67.91 0.64 -23.89 15 8 H 0.10 5.37 5.20 -2.92 -0.02 5.36 15 9 O -0.22 -13.22 9.75 -22.84 -0.22 -13.44 15 10 C 0.11 5.46 6.65 22.59 0.15 5.61 15 11 C -0.22 -10.54 9.16 22.38 0.20 -10.33 15 12 C -0.10 -4.41 9.37 22.37 0.21 -4.20 15 13 C 0.07 2.41 6.63 38.13 0.25 2.66 15 14 N -0.47 -13.71 2.99 -477.47 -1.43 -15.14 15 15 C -0.04 -0.70 10.76 82.42 0.89 0.19 15 16 C 0.02 0.18 11.95 82.43 0.98 1.16 15 17 N -0.62 -11.41 6.15 -323.80 -1.99 -13.40 15 18 H 0.45 5.47 8.96 -92.71 -0.83 4.63 15 19 C 0.62 19.47 8.80 179.07 1.58 21.05 15 20 O -0.62 -25.23 15.18 -4.63 -0.07 -25.30 15 21 C -0.07 -2.22 9.46 22.37 0.21 -2.00 15 22 C -0.17 -6.73 9.99 22.38 0.22 -6.51 15 23 H 0.27 15.22 8.31 -92.70 -0.77 14.45 15 24 H 0.12 5.91 5.63 -2.92 -0.02 5.89 15 25 H 0.13 5.99 5.44 -2.91 -0.02 5.98 15 26 H 0.22 1.84 7.09 -2.91 -0.02 1.82 15 27 H 0.24 -0.16 8.06 -2.91 -0.02 -0.18 15 28 H 0.18 3.58 6.75 -2.91 -0.02 3.56 15 29 H 0.14 5.16 8.06 -2.91 -0.02 5.13 15 Total: -1.00 -82.12 259.85 4.81 -77.32 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.38 Total: 16.42 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 5.81 Total: -16.80 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -3.12 Total: -83.93 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.29 Total: -38.74 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -82.12 4.81 -77.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231930500.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.166 kcal (2) G-P(sol) polarization free energy of solvation -82.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds