Wall clock time and date at job start Mon Mar 30 2020 03:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48496 * 109.46982 * 240.00739 * 3 2 1 5 5 H 1.48501 * 109.46701 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47027 * 120.00599 * 3 2 1 7 7 C 1.37874 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00272 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99736 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40477 * 66.46425 * 9 7 2 11 11 O 1.42093 * 106.40232 * 293.54062 * 9 7 2 12 12 N 1.65606 * 107.21551 * 180.02562 * 9 7 2 13 13 C 1.39324 * 120.00187 * 65.00118 * 12 9 7 14 14 C 1.39390 * 120.87071 * 35.26487 * 13 12 9 15 15 C 1.37939 * 119.09515 * 180.27737 * 14 13 12 16 16 N 1.31970 * 120.88402 * 359.69792 * 15 14 13 17 17 C 1.32016 * 121.92107 * 0.03190 * 16 15 14 18 18 C 1.38082 * 120.80485 * 359.97438 * 17 16 15 19 19 F 1.35104 * 120.48430 * 179.97438 * 18 17 16 20 20 H 0.96995 * 120.00340 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99482 * 244.99653 * 12 9 7 22 22 H 1.07998 * 120.45795 * 0.02562 * 14 13 12 23 23 H 1.08001 * 119.56093 * 179.72688 * 15 14 13 24 24 H 1.07997 * 119.59978 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7199 -0.0005 10 8 0.4511 -2.7951 -1.2501 11 8 0.4520 -2.7955 1.2494 12 7 2.2486 -3.9353 -0.0005 13 6 3.0960 -4.1002 1.0930 14 6 2.6484 -3.8491 2.3890 15 6 3.5202 -4.0187 3.4444 16 7 4.7612 -4.4188 3.2403 17 6 5.2227 -4.6724 2.0298 18 6 4.4142 -4.5270 0.9199 19 9 4.8934 -4.7879 -0.3161 20 1 -0.4850 0.8400 0.0004 21 1 2.3174 -4.5324 -0.7619 22 1 1.6341 -3.5222 2.5641 23 1 3.1827 -3.8220 4.4512 24 1 6.2451 -4.9974 1.9059 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232110960.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:46 Heat of formation + Delta-G solvation = -100.812324 kcal Electronic energy + Delta-G solvation = -15856.915787 eV Core-core repulsion = 12811.348731 eV Total energy + Delta-G solvation = -3045.567056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.026 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.69321 -39.78711 -35.80542 -35.24464 -34.32995 -33.25957 -30.67761 -29.74094 -26.32518 -23.50070 -22.92309 -19.38153 -18.19028 -17.95697 -17.14199 -16.70346 -16.12326 -15.53848 -15.08917 -14.67081 -14.20793 -13.91756 -13.78534 -13.22680 -13.15093 -12.28350 -12.08138 -11.51959 -11.38407 -11.29669 -10.75810 -10.69361 -10.60967 -10.43690 -9.38872 -9.33293 -9.15197 -8.84474 -8.35898 -6.87558 -5.52579 1.16640 1.32042 1.91785 3.01267 3.05488 3.11252 3.86264 3.90896 4.19088 4.23955 4.48517 4.65653 4.93073 5.06636 5.39446 5.52400 5.82284 5.99911 6.14803 6.22727 6.59752 6.87839 7.15473 7.41135 7.77209 8.05130 8.71121 10.07022 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.025660 B = 0.009489 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.917422 B = 2950.090373 C = 3208.781096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.135 3.865 3 Si 0.925 3.075 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.015 5.015 8 H 0.104 0.896 9 S 2.701 3.299 10 O -0.988 6.988 11 O -0.989 6.989 12 N -1.061 6.061 13 C 0.201 3.799 14 C -0.192 4.192 15 C 0.112 3.888 16 N -0.485 5.485 17 C 0.088 3.912 18 C 0.005 3.995 19 F -0.132 7.132 20 H 0.295 0.705 21 H 0.418 0.582 22 H 0.189 0.811 23 H 0.167 0.833 24 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 -5.674 3.330 9.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.084 4.084 3 Si 0.748 3.252 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.149 5.149 8 H 0.122 0.878 9 S 2.803 3.197 10 O -0.978 6.978 11 O -0.979 6.979 12 N -0.802 5.802 13 C 0.092 3.908 14 C -0.215 4.215 15 C -0.044 4.044 16 N -0.195 5.195 17 C -0.071 4.071 18 C -0.021 4.021 19 F -0.111 7.111 20 H 0.105 0.895 21 H 0.252 0.748 22 H 0.206 0.794 23 H 0.184 0.816 24 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.351 -5.736 4.064 9.473 hybrid contribution 0.559 0.997 -1.489 1.877 sum 6.910 -4.738 2.575 8.765 Atomic orbital electron populations 1.69860 1.06749 1.31277 1.39236 1.24736 0.94549 1.00878 0.88233 0.86115 0.79859 0.79154 0.80041 1.18719 1.19894 1.18629 1.30299 1.06038 1.10765 1.67822 0.87805 1.01148 0.72010 0.73282 0.73309 1.93414 1.72117 1.87113 1.45160 1.93265 1.72444 1.87162 1.45053 1.54168 1.52486 1.49345 1.24181 1.17868 0.88259 0.96029 0.88662 1.23240 1.05637 1.02648 0.89986 1.22683 0.88108 0.94049 0.99598 1.67723 1.15992 1.13043 1.22783 1.22635 0.99922 0.98106 0.86412 1.18745 0.92491 1.09130 0.81706 1.91469 1.87927 1.92078 1.39591 0.89484 0.74764 0.79398 0.81630 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.60 13.19 55.43 0.73 -22.87 14 2 C 0.14 3.62 5.46 -17.82 -0.10 3.52 14 3 Si 0.92 20.01 29.54 -169.99 -5.02 14.99 14 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 14 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 14 6 H -0.26 -5.50 7.11 56.52 0.40 -5.09 14 7 C -1.02 -26.94 9.68 30.60 0.30 -26.65 14 8 H 0.10 2.59 7.81 -52.49 -0.41 2.18 14 9 S 2.70 67.85 4.87 -107.50 -0.52 67.33 14 10 O -0.99 -27.58 18.02 -57.17 -1.03 -28.61 14 11 O -0.99 -26.02 14.77 -57.17 -0.84 -26.86 14 12 N -1.06 -21.00 5.71 32.58 0.19 -20.81 14 13 C 0.20 3.72 6.38 -83.51 -0.53 3.19 14 14 C -0.19 -3.44 9.29 -39.26 -0.36 -3.81 14 15 C 0.11 1.70 11.17 -17.60 -0.20 1.50 14 16 N -0.49 -7.42 10.36 -13.30 -0.14 -7.55 14 17 C 0.09 1.27 11.16 -17.53 -0.20 1.08 14 18 C 0.01 0.09 7.36 -39.12 -0.29 -0.20 14 19 F -0.13 -2.11 17.08 2.25 0.04 -2.08 14 20 H 0.29 7.42 8.31 -40.82 -0.34 7.08 14 21 H 0.42 7.13 8.87 -34.47 -0.31 6.83 14 22 H 0.19 3.68 5.16 -52.49 -0.27 3.41 14 23 H 0.17 1.95 8.06 -52.49 -0.42 1.53 14 24 H 0.16 1.80 8.06 -52.49 -0.42 1.38 14 LS Contribution 241.63 15.07 3.64 3.64 Total: -1.00 -31.95 241.63 -5.31 -37.25 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -0.97 Total: 6.94 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -1.38 Total: -21.36 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.78 Total: -51.23 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -1.87 Total: -55.47 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 67.85 SS G_CDS: -0.52 Total: 67.33 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.95 -5.31 -37.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232110960.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.559 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds