Wall clock time and date at job start Mon Mar 30 2020 03:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48496 * 109.46982 * 240.00739 * 3 2 1 5 5 H 1.48501 * 109.46701 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47027 * 120.00599 * 3 2 1 7 7 C 1.37874 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00272 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99736 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40477 * 66.46425 * 9 7 2 11 11 O 1.42093 * 106.40232 * 293.54062 * 9 7 2 12 12 N 1.65606 * 107.21551 * 180.02562 * 9 7 2 13 13 C 1.39324 * 120.00187 * 65.00118 * 12 9 7 14 14 C 1.39390 * 120.87071 * 35.26487 * 13 12 9 15 15 C 1.37939 * 119.09515 * 180.27737 * 14 13 12 16 16 N 1.31970 * 120.88402 * 359.69792 * 15 14 13 17 17 C 1.32016 * 121.92107 * 0.03190 * 16 15 14 18 18 C 1.38082 * 120.80485 * 359.97438 * 17 16 15 19 19 F 1.35104 * 120.48430 * 179.97438 * 18 17 16 20 20 H 0.96995 * 120.00340 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99482 * 244.99653 * 12 9 7 22 22 H 1.07998 * 120.45795 * 0.02562 * 14 13 12 23 23 H 1.08001 * 119.56093 * 179.72688 * 15 14 13 24 24 H 1.07997 * 119.59978 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7199 -0.0005 10 8 0.4511 -2.7951 -1.2501 11 8 0.4520 -2.7955 1.2494 12 7 2.2486 -3.9353 -0.0005 13 6 3.0960 -4.1002 1.0930 14 6 2.6484 -3.8491 2.3890 15 6 3.5202 -4.0187 3.4444 16 7 4.7612 -4.4188 3.2403 17 6 5.2227 -4.6724 2.0298 18 6 4.4142 -4.5270 0.9199 19 9 4.8934 -4.7879 -0.3161 20 1 -0.4850 0.8400 0.0004 21 1 2.3174 -4.5324 -0.7619 22 1 1.6341 -3.5222 2.5641 23 1 3.1827 -3.8220 4.4512 24 1 6.2451 -4.9974 1.9059 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232110960.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:46 Heat of formation + Delta-G solvation = -126.125408 kcal Electronic energy + Delta-G solvation = -15858.013445 eV Core-core repulsion = 12811.348731 eV Total energy + Delta-G solvation = -3046.664714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.026 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.96687 -41.07943 -37.74164 -36.85137 -36.38594 -35.26709 -31.94613 -31.14048 -28.37288 -24.81550 -24.24646 -21.28015 -19.86396 -19.50889 -18.56797 -18.41705 -17.58026 -17.17621 -16.70277 -16.17592 -16.01410 -15.61076 -15.20383 -14.53575 -14.45036 -14.07901 -13.62402 -13.38287 -13.15674 -13.06299 -12.72396 -12.53847 -12.36223 -12.17330 -11.30165 -11.12417 -10.66095 -10.15054 -9.79429 -8.84908 -7.60561 -0.22025 -0.05431 0.18922 1.31992 1.33218 1.47029 2.13671 2.47343 2.51651 2.62996 2.95008 3.41935 3.50971 3.69903 3.78356 4.00342 4.30199 4.57597 4.81398 4.86859 5.08290 5.19530 5.58751 5.76252 5.91750 6.68233 6.81506 8.11833 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.025660 B = 0.009489 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.917422 B = 2950.090373 C = 3208.781096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.078 3.922 3 Si 0.989 3.011 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.250 1.250 7 C -1.036 5.036 8 H 0.114 0.886 9 S 2.713 3.287 10 O -1.026 7.026 11 O -1.010 7.010 12 N -1.053 6.053 13 C 0.173 3.827 14 C -0.213 4.213 15 C 0.124 3.876 16 N -0.485 5.485 17 C 0.104 3.896 18 C 0.003 3.997 19 F -0.130 7.130 20 H 0.303 0.697 21 H 0.429 0.571 22 H 0.168 0.832 23 H 0.199 0.801 24 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.290 -5.330 4.194 11.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.136 4.136 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.183 1.183 6 H -0.174 1.174 7 C -1.170 5.170 8 H 0.132 0.868 9 S 2.815 3.185 10 O -1.016 7.016 11 O -1.000 7.000 12 N -0.799 5.799 13 C 0.066 3.934 14 C -0.236 4.236 15 C -0.031 4.031 16 N -0.195 5.195 17 C -0.055 4.055 18 C -0.023 4.023 19 F -0.109 7.109 20 H 0.113 0.887 21 H 0.265 0.735 22 H 0.185 0.815 23 H 0.216 0.784 24 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.619 -5.418 4.929 11.311 hybrid contribution -0.082 0.771 -1.703 1.871 sum 8.537 -4.647 3.226 10.242 Atomic orbital electron populations 1.69934 1.08483 1.32807 1.40344 1.25910 0.95416 1.04968 0.87339 0.85177 0.78882 0.74597 0.80705 1.17789 1.18277 1.17352 1.30640 1.06749 1.11782 1.67841 0.86808 1.00480 0.72211 0.73560 0.72199 1.93356 1.73749 1.87876 1.46626 1.93246 1.73630 1.87634 1.45483 1.53482 1.52346 1.48645 1.25392 1.18165 0.89169 0.97823 0.88282 1.23178 1.05426 1.04245 0.90799 1.23144 0.87571 0.92179 1.00248 1.67887 1.15673 1.12894 1.22998 1.23269 1.01089 0.95835 0.85274 1.18831 0.91727 1.09284 0.82467 1.91475 1.87735 1.92064 1.39614 0.88659 0.73476 0.81509 0.78380 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.29 13.19 21.45 0.28 -50.01 14 2 C 0.08 4.18 5.46 84.65 0.46 4.64 14 3 Si 0.99 39.93 29.54 68.60 2.03 41.96 14 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 14 5 H -0.26 -9.71 7.11 99.48 0.71 -9.00 14 6 H -0.25 -9.53 7.11 99.48 0.71 -8.82 14 7 C -1.04 -55.30 9.68 67.73 0.66 -54.64 14 8 H 0.11 5.63 7.81 -2.91 -0.02 5.61 14 9 S 2.71 139.64 4.87 -56.49 -0.28 139.36 14 10 O -1.03 -59.08 18.02 -128.00 -2.31 -61.39 14 11 O -1.01 -54.82 14.77 -128.00 -1.89 -56.71 14 12 N -1.05 -42.12 5.71 -50.85 -0.29 -42.41 14 13 C 0.17 6.32 6.38 38.57 0.25 6.56 14 14 C -0.21 -7.54 9.29 22.48 0.21 -7.33 14 15 C 0.12 3.50 11.17 84.60 0.95 4.44 14 16 N -0.48 -13.20 10.36 -195.98 -2.03 -15.23 14 17 C 0.10 2.65 11.16 84.63 0.94 3.59 14 18 C 0.00 0.09 7.36 22.57 0.17 0.26 14 19 F -0.13 -3.91 17.08 44.97 0.77 -3.15 14 20 H 0.30 15.43 8.31 -92.71 -0.77 14.66 14 21 H 0.43 14.81 8.87 -96.74 -0.86 13.95 14 22 H 0.17 6.69 5.16 -2.91 -0.02 6.68 14 23 H 0.20 4.09 8.06 -2.91 -0.02 4.07 14 24 H 0.20 3.49 8.06 -2.91 -0.02 3.47 14 Total: -1.00 -68.87 241.63 0.32 -68.55 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.41 Total: 21.50 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 3.63 Total: -42.48 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -2.04 Total: -107.65 kcal Atomic # 8 Polarization: -113.90 SS G_CDS: -4.20 Total: -118.09 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.77 Total: -3.15 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: 139.64 SS G_CDS: -0.28 Total: 139.36 kcal Total: -68.87 0.32 -68.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232110960.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.572 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds