Wall clock time and date at job start Mon Mar 30 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.50697 * 110.53556 * 179.72528 * 9 7 2 11 11 C 1.38236 * 120.00192 * 329.72975 * 10 9 7 12 12 C 1.38237 * 119.99783 * 179.78938 * 11 10 9 13 13 C 1.38232 * 119.99794 * 0.43582 * 12 11 10 14 14 C 1.38233 * 120.00484 * 359.81840 * 13 12 11 15 15 C 1.38233 * 119.99835 * 359.97256 * 14 13 12 16 16 N 1.47315 * 110.59593 * 302.55604 * 9 7 2 17 17 C 1.34523 * 106.61789 * 118.52560 * 16 9 7 18 18 O 1.21540 * 123.77346 * 179.97438 * 17 16 9 19 19 N 1.33798 * 112.46067 * 359.97438 * 17 16 9 20 20 C 1.35118 * 111.68015 * 0.09192 * 19 17 16 21 21 O 1.21236 * 127.33294 * 179.97438 * 20 19 17 22 22 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 23 23 H 1.07997 * 119.99703 * 359.97438 * 11 10 9 24 24 H 1.07998 * 119.99800 * 180.26825 * 12 11 10 25 25 H 1.08009 * 119.99660 * 179.83649 * 13 12 11 26 26 H 1.08002 * 120.00121 * 180.02562 * 14 13 12 27 27 H 1.08001 * 120.00296 * 180.02562 * 15 14 13 28 28 H 0.96996 * 126.69330 * 298.56142 * 16 9 7 29 29 H 0.96999 * 124.17980 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2088 -3.6626 -0.0079 11 6 3.4436 -3.5374 -0.6167 12 6 4.3239 -4.6033 -0.6196 13 6 3.9658 -5.7971 -0.0217 14 6 2.7289 -5.9239 0.5824 15 6 1.8503 -4.8567 0.5892 16 7 0.3496 -2.5772 1.1621 17 6 -0.9000 -2.6775 0.6741 18 8 -1.8925 -2.7616 1.3705 19 7 -0.9282 -2.6741 -0.6636 20 6 0.3126 -2.5724 -1.1887 21 8 0.6140 -2.5437 -2.3627 22 1 -0.4851 0.8401 0.0004 23 1 3.7216 -2.6060 -1.0873 24 1 5.2903 -4.5041 -1.0914 25 1 4.6526 -6.6307 -0.0263 26 1 2.4494 -6.8565 1.0499 27 1 0.8842 -4.9556 1.0615 28 1 0.6069 -2.5593 2.0971 29 1 -1.7393 -2.7380 -1.1917 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232753750.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:28 Heat of formation + Delta-G solvation = -44.920617 kcal Electronic energy + Delta-G solvation = -17991.942169 eV Core-core repulsion = 15072.648207 eV Total energy + Delta-G solvation = -2919.293962 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.91100 -39.83568 -39.10807 -36.96283 -35.20271 -33.94473 -32.10260 -31.54564 -28.77767 -25.97998 -23.61791 -23.30044 -23.02396 -21.48812 -19.24264 -18.50674 -18.11256 -17.21070 -16.82479 -16.44449 -16.29111 -16.06217 -15.62840 -15.41788 -14.78528 -14.40851 -14.27164 -14.11820 -13.48694 -13.00108 -12.86386 -12.40950 -12.17412 -11.91062 -11.86032 -11.62284 -11.01217 -10.99638 -10.75302 -9.92191 -9.67691 -9.49370 -8.38307 -6.58759 0.51305 0.63519 1.14665 1.41340 1.44144 1.53519 1.95429 2.31142 2.64022 2.77230 2.94341 3.09823 4.03159 4.08985 4.21702 4.29820 4.44219 4.72702 4.80984 4.91659 5.17234 5.29210 5.39917 5.52469 5.64852 5.68538 5.72729 5.93372 6.23274 6.27269 6.45959 6.49082 6.95384 7.16607 7.64772 8.63860 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.011528 C = 0.008718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.427914 B = 2428.300079 C = 3210.926443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.029 3.971 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.528 4.528 8 H 0.091 0.909 9 C 0.277 3.723 10 C -0.087 4.087 11 C -0.106 4.106 12 C -0.125 4.125 13 C -0.120 4.120 14 C -0.124 4.124 15 C -0.127 4.127 16 N -0.689 5.689 17 C 0.727 3.273 18 O -0.623 6.623 19 N -0.669 5.669 20 C 0.556 3.444 21 O -0.531 6.531 22 H 0.269 0.731 23 H 0.121 0.879 24 H 0.147 0.853 25 H 0.154 0.846 26 H 0.147 0.853 27 H 0.112 0.888 28 H 0.427 0.573 29 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.344 -7.981 0.936 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.176 4.176 3 Si 0.797 3.203 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.566 4.566 8 H 0.108 0.892 9 C 0.189 3.811 10 C -0.089 4.089 11 C -0.125 4.125 12 C -0.143 4.143 13 C -0.138 4.138 14 C -0.142 4.142 15 C -0.146 4.146 16 N -0.348 5.348 17 C 0.427 3.573 18 O -0.505 6.505 19 N -0.335 5.335 20 C 0.345 3.655 21 O -0.405 6.405 22 H 0.078 0.922 23 H 0.139 0.861 24 H 0.165 0.835 25 H 0.172 0.828 26 H 0.164 0.836 27 H 0.130 0.870 28 H 0.270 0.730 29 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.945 -7.890 0.697 10.535 hybrid contribution -0.609 1.435 0.039 1.559 sum 6.336 -6.456 0.736 9.075 Atomic orbital electron populations 1.69949 1.07372 1.28744 1.46840 1.25919 0.95739 1.03358 0.92565 0.85309 0.78964 0.77856 0.78192 1.20458 1.21238 1.17886 1.21335 0.94084 0.87859 1.53318 0.89154 1.17732 0.87031 0.94854 0.81453 1.19826 0.95465 0.93705 0.99866 1.21253 0.93078 0.99777 0.98343 1.21462 1.00047 0.92875 0.99897 1.21508 0.96767 0.98111 0.97380 1.21377 0.94237 0.98572 1.00040 1.21102 1.00215 0.92980 1.00287 1.45884 1.04926 1.74539 1.09411 1.15667 0.84638 0.75511 0.81482 1.90830 1.37394 1.60624 1.61624 1.44160 1.11345 1.69591 1.08400 1.21682 0.83771 0.69719 0.90277 1.90566 1.81305 1.49921 1.18685 0.92157 0.86140 0.83530 0.82820 0.83576 0.87015 0.73048 0.74381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.12 10.47 21.45 0.22 -46.90 15 2 C 0.03 1.44 5.24 84.65 0.44 1.88 15 3 Si 0.97 40.14 29.54 68.60 2.03 42.17 15 4 H -0.28 -11.61 7.11 99.48 0.71 -10.91 15 5 H -0.29 -11.92 7.11 99.48 0.71 -11.21 15 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 15 7 C -0.53 -25.44 7.77 25.60 0.20 -25.24 15 8 H 0.09 4.16 6.17 -2.91 -0.02 4.14 15 9 C 0.28 12.51 0.92 1.49 0.00 12.51 15 10 C -0.09 -3.40 4.93 -19.87 -0.10 -3.50 15 11 C -0.11 -3.79 8.94 22.27 0.20 -3.59 15 12 C -0.13 -3.43 10.05 22.27 0.22 -3.20 15 13 C -0.12 -2.87 10.05 22.27 0.22 -2.64 15 14 C -0.12 -3.29 10.05 22.27 0.22 -3.07 15 15 C -0.13 -4.29 9.35 22.27 0.21 -4.08 15 16 N -0.69 -30.18 4.29 -446.71 -1.92 -32.09 15 17 C 0.73 34.21 7.80 179.44 1.40 35.61 15 18 O -0.62 -31.84 18.04 -3.84 -0.07 -31.91 15 19 N -0.67 -30.32 5.42 -440.67 -2.39 -32.71 15 20 C 0.56 26.99 6.32 87.88 0.55 27.54 15 21 O -0.53 -27.80 18.02 -2.89 -0.05 -27.86 15 22 H 0.27 13.95 8.31 -92.71 -0.77 13.18 15 23 H 0.12 4.54 6.51 -2.91 -0.02 4.53 15 24 H 0.15 3.08 8.06 -2.91 -0.02 3.06 15 25 H 0.15 2.49 8.06 -2.91 -0.02 2.47 15 26 H 0.15 2.92 8.06 -2.91 -0.02 2.89 15 27 H 0.11 3.78 7.37 -2.91 -0.02 3.76 15 28 H 0.43 17.15 8.96 -92.71 -0.83 16.32 15 29 H 0.42 16.88 8.96 -92.71 -0.83 16.04 15 Total: -1.00 -62.96 258.97 0.96 -62.00 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.44 Total: 35.07 kcal Atomic # 6 Polarization: 28.64 SS G_CDS: 3.58 Total: 32.22 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.08 Total: -111.70 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -0.12 Total: -59.76 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -62.96 0.96 -62.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232753750.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.078 kcal (2) G-P(sol) polarization free energy of solvation -62.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds