Wall clock time and date at job start Mon Mar 30 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48499 * 109.47436 * 264.74320 * 3 2 1 5 5 H 1.48497 * 109.47055 * 24.74375 * 3 2 1 6 6 H 1.48499 * 109.47303 * 144.74327 * 3 2 1 7 7 C 1.37881 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99946 * 11.85059 * 7 2 1 9 9 C 1.50701 * 119.99942 * 191.85631 * 7 2 1 10 10 C 1.50699 * 110.53607 * 61.92301 * 9 7 2 11 11 C 1.38238 * 119.99929 * 31.85127 * 10 9 7 12 12 C 1.38237 * 119.99811 * 179.80873 * 11 10 9 13 13 C 1.38240 * 119.99691 * 0.40246 * 12 11 10 14 14 C 1.38233 * 120.00238 * 359.85807 * 13 12 11 15 15 C 1.38231 * 119.99996 * 359.95046 * 14 13 12 16 16 N 1.47314 * 110.59822 * 298.92535 * 9 7 2 17 17 C 1.34531 * 106.61873 * 241.25275 * 16 9 7 18 18 O 1.21538 * 123.77236 * 180.21007 * 17 16 9 19 19 N 1.33793 * 112.45503 * 0.38321 * 17 16 9 20 20 C 1.34770 * 111.64528 * 359.59595 * 19 17 16 21 21 O 1.21229 * 127.15719 * 180.19602 * 20 19 17 22 22 H 0.97000 * 120.00160 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.00032 * 0.02562 * 11 10 9 24 24 H 1.07997 * 120.00133 * 180.23392 * 12 11 10 25 25 H 1.07996 * 119.99504 * 179.83302 * 13 12 11 26 26 H 1.07996 * 119.99945 * 179.97438 * 14 13 12 27 27 H 1.07999 * 119.99851 * 180.02562 * 15 14 13 28 28 H 0.96999 * 126.69106 * 61.50762 * 16 9 7 29 29 H 0.96995 * 124.17301 * 179.86552 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6077 1.9823 -1.3941 5 1 1.3954 2.6821 0.5860 6 1 3.4867 1.4748 0.8082 7 6 2.0045 -1.1941 -0.0005 8 1 1.4818 -2.1194 -0.1930 9 6 3.4874 -1.2081 0.2676 10 6 3.7799 -0.6808 1.6487 11 6 2.8717 -0.8807 2.6715 12 6 3.1418 -0.4005 3.9394 13 6 4.3164 0.2868 4.1823 14 6 5.2221 0.4914 3.1583 15 6 4.9537 0.0078 1.8914 16 7 4.2060 -0.4250 -0.7525 17 6 5.0382 -1.2780 -1.3768 18 8 5.7865 -0.9540 -2.2780 19 7 4.9473 -2.5237 -0.8971 20 6 4.0462 -2.6073 0.1016 21 8 3.7447 -3.5961 0.7349 22 1 -0.4850 0.8400 0.0004 23 1 1.9528 -1.4151 2.4810 24 1 2.4341 -0.5599 4.7394 25 1 4.5261 0.6643 5.1722 26 1 6.1394 1.0287 3.3480 27 1 5.6615 0.1672 1.0914 28 1 4.1023 0.5219 -0.9356 29 1 5.4686 -3.2731 -1.2249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232753794.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:30 Heat of formation + Delta-G solvation = -8.251391 kcal Electronic energy + Delta-G solvation = -18120.366574 eV Core-core repulsion = 15202.662710 eV Total energy + Delta-G solvation = -2917.703865 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.75800 -38.61947 -37.81457 -35.62865 -33.95667 -32.42181 -30.70002 -30.29922 -27.49141 -24.31695 -22.36269 -22.17847 -21.67246 -19.92984 -17.92198 -17.30282 -16.55591 -15.98423 -15.55220 -15.31354 -14.74862 -14.58304 -14.36503 -14.03091 -13.42156 -13.01593 -12.85599 -12.75008 -12.38144 -11.53176 -11.14663 -10.95689 -10.71964 -10.52480 -10.21876 -10.02460 -9.77627 -9.54299 -9.03093 -8.62549 -8.35529 -8.03083 -6.57174 -4.67166 1.77667 1.93522 2.38612 2.97507 3.01725 3.12977 3.26858 3.69132 3.93597 4.02345 4.29296 4.74437 5.18455 5.36664 5.37843 5.48765 5.73494 5.96545 6.06560 6.16790 6.42558 6.55096 6.61227 6.87752 6.91615 7.04457 7.21795 7.40826 7.54206 7.64183 7.91287 8.13967 8.47266 8.79828 8.99406 10.51554 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.014262 C = 0.011305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.691056 B = 1962.750843 C = 2476.147228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.105 3.895 3 Si 0.834 3.166 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.229 1.229 7 C -0.523 4.523 8 H 0.096 0.904 9 C 0.255 3.745 10 C -0.070 4.070 11 C -0.065 4.065 12 C -0.132 4.132 13 C -0.126 4.126 14 C -0.136 4.136 15 C -0.113 4.113 16 N -0.718 5.718 17 C 0.702 3.298 18 O -0.578 6.578 19 N -0.686 5.686 20 C 0.551 3.449 21 O -0.477 6.477 22 H 0.275 0.725 23 H 0.143 0.857 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.418 0.582 29 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.047 1.144 5.174 8.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.104 4.104 3 Si 0.660 3.340 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.153 1.153 7 C -0.560 4.560 8 H 0.114 0.886 9 C 0.169 3.831 10 C -0.072 4.072 11 C -0.083 4.083 12 C -0.150 4.150 13 C -0.145 4.145 14 C -0.154 4.154 15 C -0.131 4.131 16 N -0.383 5.383 17 C 0.402 3.598 18 O -0.456 6.456 19 N -0.355 5.355 20 C 0.338 3.662 21 O -0.346 6.346 22 H 0.085 0.915 23 H 0.161 0.839 24 H 0.137 0.863 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.264 0.736 29 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 6.993 0.934 5.114 8.714 hybrid contribution 0.460 1.137 -0.438 1.302 sum 7.452 2.071 4.676 9.038 Atomic orbital electron populations 1.69857 1.06274 1.28231 1.44593 1.24802 0.94581 0.98783 0.92270 0.87717 0.82661 0.83993 0.79656 1.19526 1.20681 1.15263 1.20498 0.86097 0.96790 1.52661 0.88581 1.18315 0.95160 0.84850 0.84823 1.19996 0.93973 0.98366 0.94865 1.21273 0.99055 0.96920 0.91100 1.21172 0.97241 0.99505 0.97121 1.21045 0.94925 0.99950 0.98535 1.20935 0.99545 1.01660 0.93221 1.21030 0.96799 0.98574 0.96738 1.47073 1.41530 1.11459 1.38232 1.15980 0.80876 0.81182 0.81751 1.90939 1.43422 1.79367 1.31877 1.44358 1.41879 1.12115 1.37195 1.20891 0.76597 0.91259 0.77440 1.90704 1.59917 1.36279 1.47728 0.91480 0.83928 0.86315 0.86837 0.86831 0.86890 0.73552 0.73908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.92 13.96 55.43 0.77 -22.15 15 2 C 0.11 2.64 5.12 -17.82 -0.09 2.55 15 3 Si 0.83 18.18 23.87 -169.99 -4.06 14.12 15 4 H -0.27 -5.81 7.08 56.52 0.40 -5.41 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.23 -4.65 4.16 56.52 0.23 -4.41 15 7 C -0.52 -12.91 7.52 -34.44 -0.26 -13.17 15 8 H 0.10 2.63 8.02 -52.48 -0.42 2.21 15 9 C 0.26 5.48 0.68 -134.40 -0.09 5.38 15 10 C -0.07 -1.41 2.71 -104.62 -0.28 -1.69 15 11 C -0.07 -1.28 8.85 -39.58 -0.35 -1.63 15 12 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 15 13 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 15 14 C -0.14 -2.14 10.05 -39.59 -0.40 -2.54 15 15 C -0.11 -2.04 7.81 -39.58 -0.31 -2.35 15 16 N -0.72 -14.75 3.90 -55.12 -0.22 -14.97 15 17 C 0.70 14.10 8.99 -88.02 -0.79 13.31 15 18 O -0.58 -12.63 18.04 5.33 0.10 -12.54 15 19 N -0.69 -12.40 5.70 -15.79 -0.09 -12.49 15 20 C 0.55 11.39 7.42 -10.56 -0.08 11.31 15 21 O -0.48 -10.61 18.02 5.60 0.10 -10.51 15 22 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 23 H 0.14 3.02 7.14 -52.49 -0.37 2.64 15 24 H 0.12 1.66 8.06 -52.49 -0.42 1.24 15 25 H 0.11 1.37 8.06 -52.49 -0.42 0.95 15 26 H 0.11 1.47 8.06 -52.49 -0.42 1.05 15 27 H 0.11 1.96 7.32 -52.49 -0.38 1.57 15 28 H 0.42 8.47 5.21 -40.82 -0.21 8.26 15 29 H 0.42 6.18 8.96 -40.82 -0.37 5.81 15 LS Contribution 250.23 15.07 3.77 3.77 Total: -1.00 -28.47 250.23 -5.40 -33.87 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -2.33 Total: 14.62 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -3.45 Total: 6.26 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.47 Total: -49.60 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.20 Total: -23.04 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -4.06 Total: 14.12 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.47 -5.40 -33.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232753794.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.620 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds