Wall clock time and date at job start Mon Mar 30 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48499 * 109.47436 * 264.74320 * 3 2 1 5 5 H 1.48497 * 109.47055 * 24.74375 * 3 2 1 6 6 H 1.48499 * 109.47303 * 144.74327 * 3 2 1 7 7 C 1.37881 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99946 * 11.85059 * 7 2 1 9 9 C 1.50701 * 119.99942 * 191.85631 * 7 2 1 10 10 C 1.50699 * 110.53607 * 61.92301 * 9 7 2 11 11 C 1.38238 * 119.99929 * 31.85127 * 10 9 7 12 12 C 1.38237 * 119.99811 * 179.80873 * 11 10 9 13 13 C 1.38240 * 119.99691 * 0.40246 * 12 11 10 14 14 C 1.38233 * 120.00238 * 359.85807 * 13 12 11 15 15 C 1.38231 * 119.99996 * 359.95046 * 14 13 12 16 16 N 1.47314 * 110.59822 * 298.92535 * 9 7 2 17 17 C 1.34531 * 106.61873 * 241.25275 * 16 9 7 18 18 O 1.21538 * 123.77236 * 180.21007 * 17 16 9 19 19 N 1.33793 * 112.45503 * 0.38321 * 17 16 9 20 20 C 1.34770 * 111.64528 * 359.59595 * 19 17 16 21 21 O 1.21229 * 127.15719 * 180.19602 * 20 19 17 22 22 H 0.97000 * 120.00160 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.00032 * 0.02562 * 11 10 9 24 24 H 1.07997 * 120.00133 * 180.23392 * 12 11 10 25 25 H 1.07996 * 119.99504 * 179.83302 * 13 12 11 26 26 H 1.07996 * 119.99945 * 179.97438 * 14 13 12 27 27 H 1.07999 * 119.99851 * 180.02562 * 15 14 13 28 28 H 0.96999 * 126.69106 * 61.50762 * 16 9 7 29 29 H 0.96995 * 124.17301 * 179.86552 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6077 1.9823 -1.3941 5 1 1.3954 2.6821 0.5860 6 1 3.4867 1.4748 0.8082 7 6 2.0045 -1.1941 -0.0005 8 1 1.4818 -2.1194 -0.1930 9 6 3.4874 -1.2081 0.2676 10 6 3.7799 -0.6808 1.6487 11 6 2.8717 -0.8807 2.6715 12 6 3.1418 -0.4005 3.9394 13 6 4.3164 0.2868 4.1823 14 6 5.2221 0.4914 3.1583 15 6 4.9537 0.0078 1.8914 16 7 4.2060 -0.4250 -0.7525 17 6 5.0382 -1.2780 -1.3768 18 8 5.7865 -0.9540 -2.2780 19 7 4.9473 -2.5237 -0.8971 20 6 4.0462 -2.6073 0.1016 21 8 3.7447 -3.5961 0.7349 22 1 -0.4850 0.8400 0.0004 23 1 1.9528 -1.4151 2.4810 24 1 2.4341 -0.5599 4.7394 25 1 4.5261 0.6643 5.1722 26 1 6.1394 1.0287 3.3480 27 1 5.6615 0.1672 1.0914 28 1 4.1023 0.5219 -0.9356 29 1 5.4686 -3.2731 -1.2249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232753794.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:30 Heat of formation + Delta-G solvation = -29.601112 kcal Electronic energy + Delta-G solvation = -18121.292368 eV Core-core repulsion = 15202.662710 eV Total energy + Delta-G solvation = -2918.629658 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.40694 -40.03401 -39.49361 -37.30424 -35.64092 -34.24871 -32.19292 -31.63804 -29.16183 -26.10858 -23.96589 -23.63199 -23.07551 -21.52216 -19.67422 -18.97025 -18.12477 -17.53806 -17.27551 -16.87217 -16.40149 -16.27487 -15.86194 -15.48342 -15.13765 -14.58126 -14.41758 -14.15876 -13.84443 -13.30798 -12.90716 -12.57053 -12.12791 -12.00761 -11.84514 -11.74538 -11.41357 -11.22999 -10.92635 -10.31692 -9.69675 -9.44899 -8.51187 -6.65618 0.41532 0.59135 0.71252 1.23537 1.31382 1.35847 1.64491 2.05095 2.20035 2.25797 2.88374 2.92753 3.54622 3.95525 4.11836 4.25655 4.36071 4.44611 4.70795 4.81996 4.97168 5.11806 5.22854 5.28504 5.61370 5.67437 5.71312 5.84934 5.93070 6.05530 6.19980 6.43275 6.49843 7.03753 7.19584 8.61234 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.014262 C = 0.011305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.691056 B = 1962.750843 C = 2476.147228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.884 3.116 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.202 1.202 7 C -0.525 4.525 8 H 0.052 0.948 9 C 0.257 3.743 10 C -0.092 4.092 11 C -0.092 4.092 12 C -0.133 4.133 13 C -0.115 4.115 14 C -0.128 4.128 15 C -0.124 4.124 16 N -0.715 5.715 17 C 0.708 3.292 18 O -0.589 6.589 19 N -0.667 5.667 20 C 0.552 3.448 21 O -0.496 6.496 22 H 0.276 0.724 23 H 0.110 0.890 24 H 0.141 0.859 25 H 0.155 0.845 26 H 0.151 0.849 27 H 0.120 0.880 28 H 0.422 0.578 29 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.587 2.719 6.567 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.140 4.140 3 Si 0.708 3.292 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.124 1.124 7 C -0.563 4.563 8 H 0.070 0.930 9 C 0.170 3.830 10 C -0.094 4.094 11 C -0.111 4.111 12 C -0.151 4.151 13 C -0.133 4.133 14 C -0.146 4.146 15 C -0.142 4.142 16 N -0.380 5.380 17 C 0.408 3.592 18 O -0.468 6.468 19 N -0.338 5.338 20 C 0.339 3.661 21 O -0.367 6.367 22 H 0.085 0.915 23 H 0.128 0.872 24 H 0.159 0.841 25 H 0.173 0.827 26 H 0.169 0.831 27 H 0.138 0.862 28 H 0.268 0.732 29 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 9.567 2.484 6.491 11.825 hybrid contribution -0.337 0.556 -0.814 1.042 sum 9.229 3.040 5.677 11.254 Atomic orbital electron populations 1.69974 1.08024 1.29061 1.46802 1.25451 0.95027 1.01860 0.91636 0.86901 0.82440 0.79575 0.80304 1.18800 1.21352 1.12436 1.20417 0.88165 0.95199 1.52538 0.93000 1.18157 0.93129 0.85695 0.86060 1.19832 0.95586 1.00364 0.93632 1.21155 0.98413 0.98529 0.92969 1.21457 0.98550 0.98838 0.96217 1.21513 0.93444 0.98032 1.00305 1.21389 1.00747 1.00384 0.92041 1.21169 0.96004 0.98661 0.98351 1.46856 1.41392 1.11628 1.38147 1.15901 0.80570 0.81356 0.81355 1.90941 1.43985 1.79579 1.32296 1.44103 1.41290 1.12247 1.36160 1.20817 0.76789 0.90830 0.77625 1.90690 1.60672 1.36753 1.48585 0.91451 0.87181 0.84113 0.82721 0.83142 0.86208 0.73173 0.71860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.37 13.96 21.45 0.30 -50.07 15 2 C 0.07 3.38 5.12 84.66 0.43 3.81 15 3 Si 0.88 37.22 23.87 68.60 1.64 38.86 15 4 H -0.26 -10.70 7.08 99.48 0.70 -9.99 15 5 H -0.29 -12.36 7.11 99.48 0.71 -11.65 15 6 H -0.20 -7.58 4.16 99.48 0.41 -7.17 15 7 C -0.53 -26.98 7.52 25.60 0.19 -26.79 15 8 H 0.05 3.05 8.02 -2.91 -0.02 3.03 15 9 C 0.26 11.02 0.68 1.49 0.00 11.03 15 10 C -0.09 -3.61 2.71 -19.87 -0.05 -3.66 15 11 C -0.09 -3.60 8.85 22.27 0.20 -3.41 15 12 C -0.13 -4.07 10.05 22.27 0.22 -3.85 15 13 C -0.12 -2.94 10.05 22.27 0.22 -2.71 15 14 C -0.13 -3.40 10.05 22.27 0.22 -3.18 15 15 C -0.12 -4.07 7.81 22.27 0.17 -3.89 15 16 N -0.72 -28.47 3.90 -446.71 -1.74 -30.21 15 17 C 0.71 27.33 8.99 179.44 1.61 28.95 15 18 O -0.59 -24.53 18.04 -3.83 -0.07 -24.60 15 19 N -0.67 -23.40 5.70 -441.12 -2.52 -25.92 15 20 C 0.55 22.86 7.42 87.94 0.65 23.51 15 21 O -0.50 -22.42 18.02 -2.87 -0.05 -22.48 15 22 H 0.28 14.43 8.31 -92.71 -0.77 13.66 15 23 H 0.11 4.93 7.14 -2.91 -0.02 4.91 15 24 H 0.14 3.58 8.06 -2.91 -0.02 3.56 15 25 H 0.16 2.72 8.06 -2.91 -0.02 2.70 15 26 H 0.15 2.93 8.06 -2.91 -0.02 2.91 15 27 H 0.12 3.73 7.32 -2.91 -0.02 3.71 15 28 H 0.42 16.24 5.21 -92.71 -0.48 15.75 15 29 H 0.44 12.20 8.96 -92.71 -0.83 11.37 15 Total: -1.00 -62.87 250.23 1.04 -61.83 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.40 Total: 32.78 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 3.88 Total: 19.81 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -3.96 Total: -106.20 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -0.12 Total: -47.08 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 1.64 Total: 38.86 kcal Total: -62.87 1.04 -61.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232753794.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.225 kcal (2) G-P(sol) polarization free energy of solvation -62.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds