Wall clock time and date at job start Mon Mar 30 2020 03:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47242 * 2 1 4 4 C 1.50697 * 109.47023 * 120.00764 * 2 1 3 5 5 N 1.30451 * 126.07119 * 75.02525 * 4 2 1 6 6 O 1.21286 * 110.68157 * 179.97438 * 5 4 2 7 7 C 1.34754 * 109.53292 * 359.97438 * 6 5 4 8 8 C 1.40341 * 126.78895 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99144 * 174.30982 * 8 7 6 10 10 C 1.40458 * 120.00492 * 354.30806 * 8 7 6 11 11 N 1.30515 * 119.99533 * 5.99267 * 10 8 7 12 12 Si 1.86796 * 120.00118 * 185.98795 * 10 8 7 13 13 H 1.48498 * 109.46747 * 94.98693 * 12 10 8 14 14 H 1.48505 * 109.47096 * 214.98102 * 12 10 8 15 15 H 1.48500 * 109.47471 * 334.98482 * 12 10 8 16 16 N 1.33326 * 106.41280 * 359.73890 * 7 6 5 17 17 S 1.81401 * 109.46739 * 240.00789 * 2 1 3 18 18 C 1.81397 * 101.92281 * 59.99989 * 17 2 1 19 19 O 1.42098 * 108.57883 * 174.48737 * 17 2 1 20 20 O 1.42101 * 108.58089 * 305.51100 * 17 2 1 21 21 H 1.09003 * 109.46946 * 59.99365 * 1 2 3 22 22 H 1.09001 * 109.47458 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46817 * 299.99170 * 1 2 3 24 24 H 0.97000 * 119.99533 * 179.97438 * 11 10 8 25 25 H 1.08997 * 109.47291 * 60.00157 * 18 17 2 26 26 H 1.09002 * 109.47339 * 179.97438 * 18 17 2 27 27 H 1.09003 * 109.47376 * 299.99530 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 7 2.0315 -2.0002 1.4267 6 8 2.5001 -2.2685 2.5127 7 6 2.8609 -1.1322 3.1409 8 6 3.4395 -1.0235 4.4148 9 1 3.7707 -0.0615 4.7770 10 6 3.5878 -2.1657 5.2187 11 7 3.2966 -3.3439 4.7385 12 14 4.2017 -1.9985 6.9749 13 1 3.0423 -1.9317 7.9003 14 1 5.0427 -3.1731 7.3193 15 1 5.0083 -0.7581 7.1015 16 7 2.5642 -0.1322 2.3105 17 16 2.1346 -0.8549 -1.4813 18 6 1.4228 0.1518 -2.8118 19 8 3.5495 -0.7329 -1.5287 20 8 1.5479 -2.1483 -1.5288 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 3.3993 -4.1327 5.2936 25 1 1.7893 1.1750 -2.7290 26 1 1.7158 -0.2617 -3.7768 27 1 0.3359 0.1474 -2.7291 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235237467.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:47 Heat of formation + Delta-G solvation = -53.248618 kcal Electronic energy + Delta-G solvation = -16079.198869 eV Core-core repulsion = 13159.154635 eV Total energy + Delta-G solvation = -2920.044234 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.21037 -38.07947 -37.06670 -36.69285 -36.14946 -34.15279 -32.04212 -30.15619 -28.62288 -25.92150 -23.79900 -22.77189 -20.24278 -19.44560 -18.12053 -17.71906 -17.52363 -17.16986 -16.92128 -16.61208 -15.43425 -15.20469 -14.29912 -14.07426 -13.97337 -13.71243 -13.60902 -13.48056 -13.14586 -13.11929 -13.05761 -12.70409 -12.30842 -12.06650 -11.98354 -11.92090 -11.62353 -11.28421 -11.08876 -10.40712 -9.01341 -7.18416 -1.06029 0.88455 1.38735 1.46303 1.60779 1.75927 1.92561 2.12826 2.53937 2.90823 3.02018 3.07586 3.28072 3.68471 3.91536 4.11016 4.22711 4.30577 4.53699 4.67923 4.88327 4.94528 5.13732 5.31592 5.77111 5.96865 6.17334 6.36286 7.99758 8.14552 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.055369 B = 0.006141 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.575645 B = 4558.100699 C = 4639.882482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.476 4.476 3 H 0.176 0.824 4 C 0.172 3.828 5 N -0.488 5.488 6 O 0.015 5.985 7 C 0.266 3.734 8 C -0.429 4.429 9 H 0.127 0.873 10 C 0.025 3.975 11 N -0.793 5.793 12 Si 1.027 2.973 13 H -0.253 1.253 14 H -0.258 1.258 15 H -0.245 1.245 16 N -0.629 5.629 17 S 2.403 3.597 18 C -0.611 4.611 19 O -0.994 6.994 20 O -0.968 6.968 21 H 0.138 0.862 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.308 0.692 25 H 0.167 0.833 26 H 0.154 0.846 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 7.754 -7.379 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.584 4.584 3 H 0.193 0.807 4 C -0.103 4.103 5 N -0.223 5.223 6 O -0.028 6.028 7 C 0.079 3.921 8 C -0.466 4.466 9 H 0.145 0.855 10 C -0.197 4.197 11 N -0.420 5.420 12 Si 0.843 3.157 13 H -0.177 1.177 14 H -0.182 1.182 15 H -0.168 1.168 16 N -0.374 5.374 17 S 2.589 3.411 18 C -0.766 4.766 19 O -0.991 6.991 20 O -0.965 6.965 21 H 0.157 0.843 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.120 0.880 25 H 0.185 0.815 26 H 0.173 0.827 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.677 6.592 -8.006 11.377 hybrid contribution 0.029 0.212 1.066 1.087 sum -4.647 6.804 -6.940 10.773 Atomic orbital electron populations 1.21789 0.86606 1.04170 1.06770 1.28717 1.08341 1.12685 1.08635 0.80692 1.24645 0.99672 0.88375 0.97606 1.74426 1.27025 1.17318 1.03570 1.85483 1.62171 1.34160 1.21016 1.24920 0.92541 0.78749 0.95907 1.19242 1.34898 0.98596 0.93849 0.85506 1.27517 0.92334 0.92697 1.07159 1.69712 1.30716 1.00846 1.40743 0.84536 0.79225 0.80270 0.71706 1.17701 1.18233 1.16820 1.72170 1.31203 1.29500 1.04572 1.08331 0.75471 0.77908 0.79439 1.30022 1.15812 1.16030 1.14712 1.93503 1.31057 1.87866 1.86642 1.93528 1.79174 1.37739 1.86024 0.84340 0.92182 0.90960 0.88050 0.81513 0.82741 0.81218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.93 71.98 0.64 -2.89 15 2 C -0.48 -16.52 3.25 29.85 0.10 -16.42 15 3 H 0.18 4.83 8.14 -2.39 -0.02 4.81 15 4 C 0.17 9.02 6.80 138.60 0.94 9.96 15 5 N -0.49 -29.03 11.69 -56.61 -0.66 -29.69 15 6 O 0.01 0.92 9.77 64.20 0.63 1.55 15 7 C 0.27 16.12 7.81 85.06 0.66 16.78 15 8 C -0.43 -23.36 9.47 23.32 0.22 -23.13 15 9 H 0.13 6.37 7.86 -2.91 -0.02 6.34 15 10 C 0.03 1.23 5.50 85.43 0.47 1.70 15 11 N -0.79 -41.69 12.09 21.91 0.26 -41.43 15 12 Si 1.03 34.99 29.57 68.60 2.03 37.02 15 13 H -0.25 -8.16 7.11 99.48 0.71 -7.45 15 14 H -0.26 -8.24 7.11 99.48 0.71 -7.53 15 15 H -0.25 -7.91 7.11 99.48 0.71 -7.21 15 16 N -0.63 -36.09 11.61 -305.22 -3.54 -39.63 15 17 S 2.40 78.00 4.75 -56.49 -0.27 77.74 15 18 C -0.61 -7.56 10.17 113.37 1.15 -6.41 15 19 O -0.99 -41.93 18.10 -127.37 -2.30 -44.24 15 20 O -0.97 -39.77 17.63 -127.37 -2.25 -42.02 15 21 H 0.14 1.64 6.56 -2.39 -0.02 1.63 15 22 H 0.06 1.83 8.06 -2.39 -0.02 1.81 15 23 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.31 14.04 8.29 -92.71 -0.77 13.27 15 25 H 0.17 1.05 8.14 -2.39 -0.02 1.03 15 26 H 0.15 1.45 8.14 -2.39 -0.02 1.43 15 27 H 0.17 0.96 6.87 -2.39 -0.02 0.95 15 Total: -1.00 -89.34 258.63 -0.71 -90.06 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.20 Total: 11.07 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 4.19 Total: -20.42 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -3.94 Total: -110.76 kcal Atomic # 8 Polarization: -80.78 SS G_CDS: -3.92 Total: -84.70 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Atomic # 16 Polarization: 78.00 SS G_CDS: -0.27 Total: 77.74 kcal Total: -89.34 -0.71 -90.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235237467.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.809 kcal (2) G-P(sol) polarization free energy of solvation -89.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds