Wall clock time and date at job start Mon Mar 30 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46910 * 2 1 4 4 C 1.50699 * 109.47119 * 239.99946 * 2 1 3 5 5 N 1.30446 * 126.07231 * 284.97875 * 4 2 1 6 6 O 1.21289 * 110.68458 * 179.74625 * 5 4 2 7 7 C 1.34748 * 109.53037 * 0.42781 * 6 5 4 8 8 C 1.40345 * 126.79598 * 179.83941 * 7 6 5 9 9 H 1.07999 * 120.00234 * 179.69077 * 8 7 6 10 10 C 1.40467 * 119.99630 * 359.68801 * 8 7 6 11 11 N 1.30506 * 119.99979 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99697 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46999 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46635 * 120.00517 * 12 10 8 15 15 H 1.48497 * 109.46870 * 240.00129 * 12 10 8 16 16 N 1.33335 * 106.41476 * 359.58161 * 7 6 5 17 17 S 1.81400 * 109.47038 * 120.00263 * 2 1 3 18 18 C 1.81403 * 101.91809 * 304.99674 * 17 2 1 19 19 O 1.42096 * 108.57784 * 59.48432 * 17 2 1 20 20 O 1.42097 * 108.57571 * 190.51341 * 17 2 1 21 21 H 1.09001 * 109.46858 * 299.99767 * 1 2 3 22 22 H 1.09000 * 109.46703 * 60.00137 * 1 2 3 23 23 H 1.09000 * 109.46910 * 179.97438 * 1 2 3 24 24 H 0.96996 * 119.99644 * 179.97438 * 11 10 8 25 25 H 1.08998 * 109.47091 * 60.00336 * 18 17 2 26 26 H 1.09003 * 109.46657 * 180.02562 * 18 17 2 27 27 H 1.08994 * 109.47303 * 299.99823 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.0315 -2.0000 -1.4270 6 8 2.4951 -2.2678 -2.5153 7 6 2.8602 -1.1319 -3.1414 8 6 3.4386 -1.0228 -4.4154 9 1 3.6847 -0.0502 -4.8153 10 6 3.6976 -2.1787 -5.1704 11 7 3.3998 -3.3539 -4.6873 12 14 4.4668 -2.0335 -6.8664 13 1 4.7061 -0.6020 -7.1805 14 1 5.7576 -2.7673 -6.8888 15 1 3.5487 -2.6160 -7.8778 16 7 2.5579 -0.1314 -2.3134 17 16 2.1347 -0.8552 1.4811 18 6 1.2998 0.0577 2.8079 19 8 1.6408 -2.1875 1.4679 20 8 3.5342 -0.6350 1.5913 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.5782 -4.1520 -5.2088 25 1 0.2203 -0.0209 2.6794 26 1 1.5829 -0.3636 3.7725 27 1 1.5950 1.1062 2.7690 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235537809.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:49 Heat of formation + Delta-G solvation = -20.054062 kcal Electronic energy + Delta-G solvation = -16082.256813 eV Core-core repulsion = 13163.652003 eV Total energy + Delta-G solvation = -2918.604810 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.19356 -36.68703 -35.67346 -35.02384 -34.18078 -32.44213 -30.30823 -29.11174 -26.59446 -24.52825 -21.77798 -20.95235 -18.66393 -17.84620 -16.46149 -15.99217 -15.91059 -15.54699 -15.42363 -14.99404 -13.96282 -13.52528 -13.26085 -13.10566 -12.92971 -12.38623 -11.83214 -11.73308 -11.71882 -11.63792 -11.51162 -11.40303 -10.82285 -10.59215 -10.33887 -10.13151 -10.00136 -9.57109 -9.03973 -8.39415 -7.13358 -5.09877 0.15004 2.73085 2.94450 2.94616 3.02525 3.16507 3.70484 3.72553 3.88611 4.20952 4.52079 4.75982 4.78705 4.95998 5.15715 5.24692 5.29605 5.45288 5.64183 5.77163 6.20197 6.30703 6.79906 7.15457 7.80839 8.00678 8.20339 8.38307 9.85354 10.21024 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.054603 B = 0.006161 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.665400 B = 4543.510150 C = 4625.019017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.461 4.461 3 H 0.147 0.853 4 C 0.162 3.838 5 N -0.448 5.448 6 O 0.056 5.944 7 C 0.302 3.698 8 C -0.412 4.412 9 H 0.116 0.884 10 C 0.069 3.931 11 N -0.759 5.759 12 Si 0.939 3.061 13 H -0.255 1.255 14 H -0.268 1.268 15 H -0.268 1.268 16 N -0.603 5.603 17 S 2.425 3.575 18 C -0.664 4.664 19 O -0.913 6.913 20 O -0.937 6.937 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.294 0.706 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 5.391 6.786 9.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.571 4.571 3 H 0.165 0.835 4 C -0.112 4.112 5 N -0.176 5.176 6 O 0.006 5.994 7 C 0.113 3.887 8 C -0.449 4.449 9 H 0.134 0.866 10 C -0.157 4.157 11 N -0.385 5.385 12 Si 0.761 3.239 13 H -0.178 1.178 14 H -0.192 1.192 15 H -0.193 1.193 16 N -0.348 5.348 17 S 2.604 3.396 18 C -0.812 4.812 19 O -0.910 6.910 20 O -0.934 6.934 21 H 0.089 0.911 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.982 4.330 7.497 9.529 hybrid contribution -0.146 0.744 -0.967 1.229 sum -4.128 5.074 6.530 9.242 Atomic orbital electron populations 1.21690 0.89539 1.04474 1.03897 1.28229 1.05830 1.11929 1.11096 0.83506 1.23467 1.02757 0.88844 0.96168 1.74533 1.24179 1.15472 1.03428 1.85561 1.60310 1.33484 1.20023 1.24231 0.91416 0.78311 0.94790 1.18661 1.35464 0.95868 0.94920 0.86650 1.26241 0.93753 0.94153 1.01543 1.69635 1.31682 0.99315 1.37913 0.85745 0.79022 0.80270 0.78854 1.17808 1.19241 1.19297 1.72198 1.29931 1.29303 1.03337 1.08095 0.76365 0.77194 0.77943 1.30418 1.15228 1.15795 1.19803 1.93602 1.81515 1.30769 1.85132 1.93575 1.27909 1.86506 1.85423 0.91069 0.90060 0.90184 0.89483 0.85157 0.85385 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.88 37.16 0.33 -1.59 15 2 C -0.46 -8.18 3.29 -27.88 -0.09 -8.27 15 3 H 0.15 2.19 8.14 -51.92 -0.42 1.77 15 4 C 0.16 4.08 6.80 -156.79 -1.07 3.01 15 5 N -0.45 -12.50 11.45 31.51 0.36 -12.14 15 6 O 0.06 1.67 9.74 15.14 0.15 1.82 15 7 C 0.30 8.67 7.82 -16.35 -0.13 8.54 15 8 C -0.41 -10.85 9.48 -37.95 -0.36 -11.21 15 9 H 0.12 2.85 7.85 -52.49 -0.41 2.43 15 10 C 0.07 1.66 5.50 -17.28 -0.10 1.56 15 11 N -0.76 -19.35 12.06 55.57 0.67 -18.68 15 12 Si 0.94 17.46 29.56 -169.99 -5.03 12.44 15 13 H -0.25 -4.63 7.11 56.52 0.40 -4.22 15 14 H -0.27 -4.88 7.11 56.52 0.40 -4.47 15 15 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 16 N -0.60 -16.58 11.61 -11.50 -0.13 -16.72 15 17 S 2.43 40.31 4.82 -107.50 -0.52 39.80 15 18 C -0.66 -6.19 10.01 101.05 1.01 -5.18 15 19 O -0.91 -18.51 17.51 -57.83 -1.01 -19.53 15 20 O -0.94 -19.14 18.10 -57.83 -1.05 -20.19 15 21 H 0.07 0.62 6.39 -51.93 -0.33 0.29 15 22 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 24 H 0.29 6.58 8.29 -40.82 -0.34 6.25 15 25 H 0.13 0.92 6.77 -51.92 -0.35 0.57 15 26 H 0.13 1.02 8.14 -51.92 -0.42 0.60 15 27 H 0.13 0.89 8.14 -51.93 -0.42 0.47 15 LS Contribution 257.98 15.07 3.89 3.89 Total: -1.00 -36.26 257.98 -5.41 -41.67 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -2.34 Total: 0.77 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.40 Total: -13.13 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.90 Total: -47.54 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.91 Total: -37.89 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 16 Polarization: 40.31 SS G_CDS: -0.52 Total: 39.80 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -36.26 -5.41 -41.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235537809.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.618 kcal (2) G-P(sol) polarization free energy of solvation -36.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds