Wall clock time and date at job start Mon Mar 30 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46910 * 2 1 4 4 C 1.50699 * 109.47119 * 239.99946 * 2 1 3 5 5 N 1.30446 * 126.07231 * 284.97875 * 4 2 1 6 6 O 1.21289 * 110.68458 * 179.74625 * 5 4 2 7 7 C 1.34748 * 109.53037 * 0.42781 * 6 5 4 8 8 C 1.40345 * 126.79598 * 179.83941 * 7 6 5 9 9 H 1.07999 * 120.00234 * 179.69077 * 8 7 6 10 10 C 1.40467 * 119.99630 * 359.68801 * 8 7 6 11 11 N 1.30506 * 119.99979 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99697 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46999 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46635 * 120.00517 * 12 10 8 15 15 H 1.48497 * 109.46870 * 240.00129 * 12 10 8 16 16 N 1.33335 * 106.41476 * 359.58161 * 7 6 5 17 17 S 1.81400 * 109.47038 * 120.00263 * 2 1 3 18 18 C 1.81403 * 101.91809 * 304.99674 * 17 2 1 19 19 O 1.42096 * 108.57784 * 59.48432 * 17 2 1 20 20 O 1.42097 * 108.57571 * 190.51341 * 17 2 1 21 21 H 1.09001 * 109.46858 * 299.99767 * 1 2 3 22 22 H 1.09000 * 109.46703 * 60.00137 * 1 2 3 23 23 H 1.09000 * 109.46910 * 179.97438 * 1 2 3 24 24 H 0.96996 * 119.99644 * 179.97438 * 11 10 8 25 25 H 1.08998 * 109.47091 * 60.00336 * 18 17 2 26 26 H 1.09003 * 109.46657 * 180.02562 * 18 17 2 27 27 H 1.08994 * 109.47303 * 299.99823 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.0315 -2.0000 -1.4270 6 8 2.4951 -2.2678 -2.5153 7 6 2.8602 -1.1319 -3.1414 8 6 3.4386 -1.0228 -4.4154 9 1 3.6847 -0.0502 -4.8153 10 6 3.6976 -2.1787 -5.1704 11 7 3.3998 -3.3539 -4.6873 12 14 4.4668 -2.0335 -6.8664 13 1 4.7061 -0.6020 -7.1805 14 1 5.7576 -2.7673 -6.8888 15 1 3.5487 -2.6160 -7.8778 16 7 2.5579 -0.1314 -2.3134 17 16 2.1347 -0.8552 1.4811 18 6 1.2998 0.0577 2.8079 19 8 1.6408 -2.1875 1.4679 20 8 3.5342 -0.6350 1.5913 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.5782 -4.1520 -5.2088 25 1 0.2203 -0.0209 2.6794 26 1 1.5829 -0.3636 3.7725 27 1 1.5950 1.1062 2.7690 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235537809.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:49 Heat of formation + Delta-G solvation = -52.686900 kcal Electronic energy + Delta-G solvation = -16083.671879 eV Core-core repulsion = 13163.652003 eV Total energy + Delta-G solvation = -2920.019876 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.20461 -38.07381 -37.06019 -36.69225 -36.14771 -34.16201 -32.05391 -30.13544 -28.61797 -25.91021 -23.79292 -22.77052 -20.23802 -19.43957 -18.10833 -17.70526 -17.53363 -17.16748 -16.94094 -16.58906 -15.42067 -15.19998 -14.29717 -14.10737 -13.96790 -13.69600 -13.58177 -13.47586 -13.14557 -13.12496 -13.05091 -12.69761 -12.30823 -12.04224 -11.96144 -11.92306 -11.63548 -11.29263 -11.07466 -10.40278 -9.00995 -7.18258 -1.05351 0.88652 1.38856 1.46033 1.61902 1.76079 1.92274 2.12881 2.54320 2.92960 3.03285 3.06342 3.28258 3.68608 3.91873 4.11443 4.23280 4.30706 4.53484 4.67806 4.88372 4.94733 5.13887 5.32026 5.77443 5.97335 6.17530 6.36663 8.00243 8.15283 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.054603 B = 0.006161 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.665400 B = 4543.510150 C = 4625.019017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.476 4.476 3 H 0.174 0.826 4 C 0.170 3.830 5 N -0.484 5.484 6 O 0.015 5.985 7 C 0.265 3.735 8 C -0.428 4.428 9 H 0.127 0.873 10 C 0.025 3.975 11 N -0.794 5.794 12 Si 1.027 2.973 13 H -0.245 1.245 14 H -0.257 1.257 15 H -0.255 1.255 16 N -0.630 5.630 17 S 2.403 3.597 18 C -0.611 4.611 19 O -0.967 6.967 20 O -0.993 6.993 21 H 0.139 0.861 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.308 0.692 25 H 0.169 0.831 26 H 0.154 0.846 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 7.383 7.477 11.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.584 4.584 3 H 0.191 0.809 4 C -0.105 4.105 5 N -0.219 5.219 6 O -0.028 6.028 7 C 0.078 3.922 8 C -0.465 4.465 9 H 0.145 0.855 10 C -0.197 4.197 11 N -0.421 5.421 12 Si 0.843 3.157 13 H -0.168 1.168 14 H -0.182 1.182 15 H -0.179 1.179 16 N -0.376 5.376 17 S 2.589 3.411 18 C -0.766 4.766 19 O -0.964 6.964 20 O -0.990 6.990 21 H 0.158 0.842 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.119 0.881 25 H 0.187 0.813 26 H 0.173 0.827 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.759 6.267 8.104 11.296 hybrid contribution 0.044 0.198 -1.058 1.078 sum -4.716 6.465 7.045 10.661 Atomic orbital electron populations 1.21819 0.86546 1.04221 1.06824 1.28716 1.08386 1.12603 1.08671 0.80886 1.24652 0.99921 0.88384 0.97568 1.74461 1.26744 1.17240 1.03444 1.85489 1.62012 1.34231 1.21068 1.24929 0.92471 0.78735 0.96059 1.19268 1.35062 0.97531 0.94637 0.85535 1.27513 0.93393 0.92774 1.06062 1.69703 1.31506 1.00676 1.40168 0.84506 0.78161 0.80879 0.72201 1.16759 1.18156 1.17859 1.72177 1.31477 1.29500 1.04402 1.08328 0.76021 0.77392 0.79402 1.30028 1.15891 1.15971 1.14711 1.93537 1.81826 1.34929 1.86128 1.93503 1.32039 1.87198 1.86272 0.84247 0.91013 0.92054 0.88054 0.81323 0.82736 0.81410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.88 71.98 0.64 -2.86 15 2 C -0.48 -16.53 3.29 29.85 0.10 -16.43 15 3 H 0.17 4.86 8.14 -2.39 -0.02 4.84 15 4 C 0.17 8.89 6.80 138.61 0.94 9.84 15 5 N -0.48 -28.73 11.45 -56.62 -0.65 -29.38 15 6 O 0.02 0.95 9.74 64.26 0.63 1.58 15 7 C 0.27 16.08 7.82 85.06 0.66 16.74 15 8 C -0.43 -23.32 9.48 23.33 0.22 -23.10 15 9 H 0.13 6.37 7.85 -2.91 -0.02 6.34 15 10 C 0.02 1.21 5.50 85.43 0.47 1.68 15 11 N -0.79 -41.72 12.06 21.91 0.26 -41.46 15 12 Si 1.03 35.05 29.56 68.60 2.03 37.08 15 13 H -0.24 -7.91 7.11 99.48 0.71 -7.21 15 14 H -0.26 -8.35 7.11 99.48 0.71 -7.64 15 15 H -0.25 -8.13 7.11 99.48 0.71 -7.42 15 16 N -0.63 -36.20 11.61 -305.21 -3.54 -39.74 15 17 S 2.40 77.86 4.82 -56.49 -0.27 77.59 15 18 C -0.61 -7.55 10.01 113.37 1.14 -6.42 15 19 O -0.97 -40.19 17.51 -127.37 -2.23 -42.42 15 20 O -0.99 -41.36 18.10 -127.37 -2.30 -43.66 15 21 H 0.14 1.60 6.39 -2.39 -0.02 1.59 15 22 H 0.07 1.98 8.14 -2.39 -0.02 1.97 15 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.31 14.02 8.29 -92.71 -0.77 13.25 15 25 H 0.17 1.01 6.77 -2.39 -0.02 0.99 15 26 H 0.15 1.44 8.14 -2.39 -0.02 1.42 15 27 H 0.17 1.00 8.14 -2.39 -0.02 0.98 15 Total: -1.00 -89.35 257.98 -0.71 -90.05 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.20 Total: 10.92 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 4.17 Total: -20.55 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -3.93 Total: -110.58 kcal Atomic # 8 Polarization: -80.60 SS G_CDS: -3.91 Total: -84.51 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Atomic # 16 Polarization: 77.86 SS G_CDS: -0.27 Total: 77.59 kcal Total: -89.35 -0.71 -90.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235537809.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.368 kcal (2) G-P(sol) polarization free energy of solvation -89.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds