Wall clock time and date at job start Mon Mar 30 2020 04:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38702 * 120.73181 * 2 1 4 4 N 1.32184 * 119.18521 * 180.02562 * 3 2 1 5 5 C 1.32505 * 120.75161 * 0.02562 * 4 3 2 6 6 C 1.48549 * 119.20547 * 179.97438 * 5 4 3 7 7 N 1.30692 * 126.40557 * 0.02796 * 6 5 4 8 8 O 1.21289 * 110.10807 * 179.97438 * 7 6 5 9 9 C 1.33672 * 110.01547 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.44284 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47294 * 270.02546 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47293 * 89.99746 * 15 13 11 17 17 H 1.48504 * 109.47104 * 209.99992 * 15 13 11 18 18 H 1.48495 * 109.47249 * 329.99739 * 15 13 11 19 19 N 1.30966 * 107.10779 * 0.26761 * 9 8 7 20 20 N 1.32512 * 121.58708 * 0.27245 * 5 4 3 21 21 C 1.32174 * 120.75093 * 359.44386 * 20 5 4 22 22 H 1.09002 * 109.46865 * 90.00228 * 1 2 3 23 23 H 1.08995 * 109.47089 * 209.99841 * 1 2 3 24 24 H 1.08998 * 109.47099 * 330.00072 * 1 2 3 25 25 H 1.08001 * 120.40939 * 0.04141 * 3 2 1 26 26 H 1.09001 * 109.46665 * 150.02927 * 10 9 8 27 27 H 1.09000 * 109.47722 * 30.03259 * 10 9 8 28 28 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 29 29 H 1.08002 * 120.40889 * 180.26939 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1922 0.0000 4 7 3.5372 1.1566 -0.0005 5 6 4.1838 -0.0001 -0.0015 6 6 5.6692 -0.0001 -0.0027 7 7 6.4449 1.0518 -0.0023 8 8 7.6091 0.7114 -0.0030 9 6 7.6957 -0.6225 -0.0033 10 6 8.9635 -1.4372 -0.0037 11 6 9.3864 -1.7079 -1.4246 12 1 8.7963 -1.3276 -2.2453 13 6 10.5265 -2.4409 -1.6769 14 7 11.2447 -2.9045 -0.6774 15 14 11.0510 -2.7758 -3.4382 16 1 11.9474 -1.6871 -3.9032 17 1 11.7724 -4.0723 -3.5018 18 1 9.8501 -2.8344 -4.3097 19 7 6.4716 -1.0881 -0.0087 20 7 3.5371 -1.1567 -0.0074 21 6 2.2159 -1.1923 -0.0015 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6946 2.1381 0.0007 26 1 8.7879 -2.3827 0.5095 27 1 9.7503 -0.8854 0.5107 28 1 12.0471 -3.4199 -0.8549 29 1 1.6945 -2.1382 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235927369.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:30 Heat of formation + Delta-G solvation = 110.559844 kcal Electronic energy + Delta-G solvation = -16361.448871 eV Core-core repulsion = 13481.189800 eV Total energy + Delta-G solvation = -2880.259072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.86980 -41.15708 -35.47042 -34.30595 -33.91002 -33.43999 -31.87767 -28.61133 -28.02748 -24.92425 -24.28638 -23.89078 -22.42415 -20.95000 -17.97552 -17.60849 -17.51627 -16.35082 -16.11255 -15.19081 -14.81946 -14.72263 -14.15415 -13.79207 -13.44539 -13.27916 -12.79500 -12.49219 -12.28020 -11.40289 -11.32166 -11.12608 -11.03527 -10.98646 -10.78178 -10.38516 -10.18777 -10.00445 -9.42382 -9.32133 -8.85287 -8.59977 -6.23568 -4.29073 0.36950 0.94988 1.93851 2.82216 3.15258 3.26067 3.32195 3.37297 3.71360 3.78841 3.81721 4.33611 4.34115 4.47911 4.53469 4.73581 4.92332 5.15358 5.17845 5.30849 5.48592 5.61840 5.69092 6.10317 6.45208 6.54997 6.81935 7.11962 7.18916 7.70060 7.89114 7.92598 8.71013 8.81255 9.35726 10.86822 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.041209 B = 0.004539 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.301848 B = 6167.481114 C = 6438.048018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.193 4.193 3 C 0.148 3.852 4 N -0.488 5.488 5 C 0.405 3.595 6 C 0.201 3.799 7 N -0.359 5.359 8 O 0.079 5.921 9 C 0.237 3.763 10 C 0.101 3.899 11 C -0.524 4.524 12 H 0.062 0.938 13 C 0.066 3.934 14 N -0.887 5.887 15 Si 0.907 3.093 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.272 1.272 19 N -0.470 5.470 20 N -0.472 5.472 21 C 0.150 3.850 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.173 0.827 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.268 0.732 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.343 4.929 2.048 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.198 4.198 3 C -0.019 4.019 4 N -0.203 5.203 5 C 0.138 3.862 6 C -0.071 4.071 7 N -0.067 5.067 8 O 0.015 5.985 9 C 0.019 3.981 10 C 0.062 3.938 11 C -0.563 4.563 12 H 0.080 0.920 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.733 3.267 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.197 1.197 19 N -0.203 5.203 20 N -0.186 5.186 21 C -0.017 4.017 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.190 0.810 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -17.788 5.313 2.092 18.682 hybrid contribution -0.501 -0.271 -0.950 1.108 sum -18.288 5.041 1.141 19.005 Atomic orbital electron populations 1.20657 0.88804 1.03625 1.03017 1.21881 0.99350 0.95709 1.02841 1.23174 0.88712 0.98495 0.91500 1.68250 1.10138 1.29356 1.12531 1.19020 0.89531 0.84207 0.93413 1.22521 0.93044 0.85647 1.05840 1.74902 0.89721 1.22834 1.19237 1.85320 1.21164 1.26646 1.65358 1.30297 0.97912 0.80428 0.89479 1.18273 0.82081 0.93107 1.00290 1.20795 1.09806 1.35625 0.90048 0.92001 1.24918 0.95791 0.94892 0.98089 1.69927 1.16169 1.35409 1.30985 0.86345 0.78805 0.77823 0.83682 1.20265 1.20852 1.19693 1.72166 0.99494 1.27001 1.21664 1.68315 1.09773 1.29139 1.11389 1.23272 0.88830 0.98519 0.91124 0.90411 0.90726 0.90818 0.80954 0.91026 0.92064 0.92261 0.80820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.06 36.01 0.36 -0.16 15 2 C -0.19 -1.85 5.92 -104.27 -0.62 -2.46 15 3 C 0.15 1.69 11.00 -17.23 -0.19 1.50 15 4 N -0.49 -8.11 10.33 -11.10 -0.11 -8.22 15 5 C 0.41 7.71 7.60 -156.98 -1.19 6.52 15 6 C 0.20 4.43 7.99 -156.14 -1.25 3.18 15 7 N -0.36 -7.92 12.16 30.95 0.38 -7.54 15 8 O 0.08 1.75 11.29 18.03 0.20 1.95 15 9 C 0.24 5.52 7.69 -13.00 -0.10 5.42 15 10 C 0.10 2.49 5.60 -29.03 -0.16 2.33 15 11 C -0.52 -14.18 9.09 -34.44 -0.31 -14.49 15 12 H 0.06 1.69 7.74 -52.49 -0.41 1.29 15 13 C 0.07 1.79 5.46 -17.82 -0.10 1.70 15 14 N -0.89 -24.68 13.29 55.43 0.74 -23.95 15 15 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 15 16 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 19 N -0.47 -11.10 11.55 -9.90 -0.11 -11.21 15 20 N -0.47 -8.17 10.34 -11.10 -0.11 -8.28 15 21 C 0.15 1.77 11.00 -17.23 -0.19 1.58 15 22 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 15 23 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 15 24 H 0.07 0.29 8.10 -51.93 -0.42 -0.14 15 25 H 0.17 1.27 8.06 -52.49 -0.42 0.85 15 26 H 0.07 1.82 8.14 -51.93 -0.42 1.40 15 27 H 0.06 1.48 8.14 -51.93 -0.42 1.06 15 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 15 29 H 0.17 1.39 8.06 -52.49 -0.42 0.97 15 LS Contribution 274.03 15.07 4.13 4.13 Total: -1.00 -31.84 274.03 -6.16 -38.00 By element: Atomic # 1 Polarization: -3.40 SS G_CDS: -2.50 Total: -5.90 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -3.75 Total: 5.11 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.77 Total: -59.20 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.20 Total: 1.95 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.84 -6.16 -38.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235927369.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.559 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds