Wall clock time and date at job start Mon Mar 30 2020 04:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38702 * 120.73181 * 2 1 4 4 N 1.32184 * 119.18521 * 180.02562 * 3 2 1 5 5 C 1.32505 * 120.75161 * 0.02562 * 4 3 2 6 6 C 1.48549 * 119.20547 * 179.97438 * 5 4 3 7 7 N 1.30692 * 126.40557 * 0.02796 * 6 5 4 8 8 O 1.21289 * 110.10807 * 179.97438 * 7 6 5 9 9 C 1.33672 * 110.01547 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.44284 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47294 * 270.02546 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47293 * 89.99746 * 15 13 11 17 17 H 1.48504 * 109.47104 * 209.99992 * 15 13 11 18 18 H 1.48495 * 109.47249 * 329.99739 * 15 13 11 19 19 N 1.30966 * 107.10779 * 0.26761 * 9 8 7 20 20 N 1.32512 * 121.58708 * 0.27245 * 5 4 3 21 21 C 1.32174 * 120.75093 * 359.44386 * 20 5 4 22 22 H 1.09002 * 109.46865 * 90.00228 * 1 2 3 23 23 H 1.08995 * 109.47089 * 209.99841 * 1 2 3 24 24 H 1.08998 * 109.47099 * 330.00072 * 1 2 3 25 25 H 1.08001 * 120.40939 * 0.04141 * 3 2 1 26 26 H 1.09001 * 109.46665 * 150.02927 * 10 9 8 27 27 H 1.09000 * 109.47722 * 30.03259 * 10 9 8 28 28 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 29 29 H 1.08002 * 120.40889 * 180.26939 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1922 0.0000 4 7 3.5372 1.1566 -0.0005 5 6 4.1838 -0.0001 -0.0015 6 6 5.6692 -0.0001 -0.0027 7 7 6.4449 1.0518 -0.0023 8 8 7.6091 0.7114 -0.0030 9 6 7.6957 -0.6225 -0.0033 10 6 8.9635 -1.4372 -0.0037 11 6 9.3864 -1.7079 -1.4246 12 1 8.7963 -1.3276 -2.2453 13 6 10.5265 -2.4409 -1.6769 14 7 11.2447 -2.9045 -0.6774 15 14 11.0510 -2.7758 -3.4382 16 1 11.9474 -1.6871 -3.9032 17 1 11.7724 -4.0723 -3.5018 18 1 9.8501 -2.8344 -4.3097 19 7 6.4716 -1.0881 -0.0087 20 7 3.5371 -1.1567 -0.0074 21 6 2.2159 -1.1923 -0.0015 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6946 2.1381 0.0007 26 1 8.7879 -2.3827 0.5095 27 1 9.7503 -0.8854 0.5107 28 1 12.0471 -3.4199 -0.8549 29 1 1.6945 -2.1382 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235927369.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:30 Heat of formation + Delta-G solvation = 87.560721 kcal Electronic energy + Delta-G solvation = -16362.446188 eV Core-core repulsion = 13481.189800 eV Total energy + Delta-G solvation = -2881.256389 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.60315 -42.20319 -37.10886 -35.94377 -35.04267 -34.79916 -33.62775 -30.47570 -29.04725 -26.25760 -25.58620 -25.50298 -23.87017 -22.46376 -19.43415 -19.28972 -18.71266 -18.34137 -17.64289 -16.70810 -16.25463 -15.60509 -15.37959 -15.14114 -14.60489 -14.47141 -14.14355 -14.00144 -13.30533 -13.15363 -13.03426 -12.79675 -12.61922 -12.22905 -12.16312 -12.10939 -12.02637 -11.91442 -11.04747 -10.66738 -10.39224 -10.12757 -8.30742 -6.43891 -0.79535 0.00864 0.25571 1.21443 1.44350 1.44774 1.55979 1.76796 1.94620 2.39953 2.59832 2.63157 3.04915 3.38320 3.50010 3.58461 3.81993 3.84184 4.10465 4.59047 4.64545 4.78314 4.86245 5.01796 5.06455 5.09114 5.19165 5.37748 5.58927 5.82049 5.86977 6.59755 6.78290 7.07738 7.24530 8.80130 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.041209 B = 0.004539 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.301848 B = 6167.481114 C = 6438.048018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.153 4.153 3 C 0.136 3.864 4 N -0.511 5.511 5 C 0.359 3.641 6 C 0.205 3.795 7 N -0.369 5.369 8 O 0.074 5.926 9 C 0.233 3.767 10 C 0.111 3.889 11 C -0.545 4.545 12 H 0.052 0.948 13 C 0.023 3.977 14 N -0.914 5.914 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.274 1.274 19 N -0.489 5.489 20 N -0.505 5.505 21 C 0.134 3.866 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.215 0.785 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.273 0.727 29 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.131 5.119 1.330 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.158 4.158 3 C -0.030 4.030 4 N -0.226 5.226 5 C 0.092 3.908 6 C -0.067 4.067 7 N -0.079 5.079 8 O 0.014 5.986 9 C 0.015 3.985 10 C 0.072 3.928 11 C -0.584 4.584 12 H 0.070 0.930 13 C -0.178 4.178 14 N -0.552 5.552 15 Si 0.795 3.205 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.199 1.199 19 N -0.223 5.223 20 N -0.220 5.220 21 C -0.031 4.031 22 H 0.114 0.886 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.232 0.768 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -20.575 5.515 1.384 21.346 hybrid contribution 0.080 -0.310 -0.686 0.757 sum -20.495 5.204 0.698 21.157 Atomic orbital electron populations 1.20855 0.84721 1.05681 1.04636 1.22413 1.01771 0.94013 0.97621 1.24000 0.87147 1.01105 0.90706 1.68163 1.12727 1.28670 1.13060 1.18692 0.88241 0.85748 0.98076 1.23147 0.94933 0.84678 1.03912 1.74849 0.89530 1.22969 1.20544 1.85290 1.21628 1.25973 1.65715 1.29942 0.97598 0.80896 0.90099 1.18007 0.82697 0.92765 0.99315 1.20997 1.10313 1.36306 0.90734 0.93015 1.25719 0.95570 0.94376 1.02156 1.70004 1.16568 1.35696 1.32895 0.85360 0.78329 0.78206 0.78646 1.19199 1.19817 1.19915 1.72130 0.99827 1.28127 1.22188 1.68195 1.12530 1.28982 1.12288 1.24022 0.87254 1.01159 0.90702 0.88567 0.88859 0.88679 0.76838 0.92313 0.92033 0.91745 0.77205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.06 71.24 0.72 0.24 15 2 C -0.15 -2.37 5.92 -19.64 -0.12 -2.49 15 3 C 0.14 2.72 11.00 84.75 0.93 3.66 15 4 N -0.51 -16.68 10.33 -189.05 -1.95 -18.63 15 5 C 0.36 13.88 7.60 137.66 1.05 14.92 15 6 C 0.21 9.38 7.99 137.36 1.10 10.47 15 7 N -0.37 -16.88 12.16 -59.26 -0.72 -17.60 15 8 O 0.07 3.44 11.29 74.58 0.84 4.28 15 9 C 0.23 11.35 7.69 88.36 0.68 12.03 15 10 C 0.11 5.70 5.60 29.10 0.16 5.86 15 11 C -0.54 -30.25 9.09 25.60 0.23 -30.01 15 12 H 0.05 2.91 7.74 -2.91 -0.02 2.89 15 13 C 0.02 1.24 5.46 84.65 0.46 1.70 15 14 N -0.91 -51.27 13.29 21.45 0.28 -50.98 15 15 Si 0.97 42.92 29.54 68.60 2.03 44.95 15 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 19 N -0.49 -24.03 11.55 -302.63 -3.50 -27.53 15 20 N -0.50 -17.38 10.34 -189.04 -1.95 -19.34 15 21 C 0.13 2.86 11.00 84.75 0.93 3.80 15 22 H 0.10 0.27 8.14 -2.39 -0.02 0.25 15 23 H 0.09 0.21 8.10 -2.39 -0.02 0.19 15 24 H 0.09 0.16 8.10 -2.39 -0.02 0.14 15 25 H 0.22 2.26 8.06 -2.91 -0.02 2.24 15 26 H 0.06 3.14 8.14 -2.39 -0.02 3.12 15 27 H 0.06 3.11 8.14 -2.39 -0.02 3.09 15 28 H 0.27 14.31 8.31 -92.71 -0.77 13.54 15 29 H 0.21 2.65 8.06 -2.91 -0.02 2.63 15 Total: -1.00 -71.87 274.03 2.36 -69.51 By element: Atomic # 1 Polarization: -6.02 SS G_CDS: 1.18 Total: -4.84 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 6.15 Total: 20.18 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -7.84 Total: -134.08 kcal Atomic # 8 Polarization: 3.44 SS G_CDS: 0.84 Total: 4.28 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -71.87 2.36 -69.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235927369.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.075 kcal (2) G-P(sol) polarization free energy of solvation -71.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds