Wall clock time and date at job start Mon Mar 30 2020 03:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30500 * 1 3 3 Si 1.86798 * 120.00212 * 2 1 4 4 H 1.48502 * 109.47317 * 240.00538 * 3 2 1 5 5 H 1.48498 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46945 * 120.00414 * 3 2 1 7 7 C 1.40464 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00298 * 179.97438 * 7 2 1 9 9 C 1.40346 * 119.99779 * 0.02562 * 7 2 1 10 10 N 1.33332 * 126.79078 * 180.28705 * 9 7 2 11 11 C 1.33573 * 105.51126 * 180.13794 * 10 9 7 12 12 C 1.50699 * 126.07214 * 179.85199 * 11 10 9 13 13 O 1.42905 * 109.46972 * 269.71978 * 12 11 10 14 14 C 1.35896 * 117.00039 * 180.02562 * 13 12 11 15 15 C 1.38738 * 120.05353 * 359.72616 * 14 13 12 16 16 C 1.38148 * 119.94048 * 179.74738 * 15 14 13 17 17 C 1.38261 * 120.05800 * 0.50500 * 16 15 14 18 18 C 1.38262 * 120.11048 * 359.76434 * 17 16 15 19 19 C 1.38145 * 120.05942 * 359.97438 * 18 17 16 20 20 N 1.30451 * 107.85610 * 359.59220 * 11 10 9 21 21 O 1.21280 * 110.68348 * 0.26135 * 20 11 10 22 22 H 0.97002 * 120.00421 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47247 * 149.71914 * 12 11 10 24 24 H 1.09001 * 109.47358 * 29.71340 * 12 11 10 25 25 H 1.07995 * 120.02746 * 359.97438 * 15 14 13 26 26 H 1.08005 * 119.97089 * 180.27560 * 16 15 14 27 27 H 1.08002 * 119.94730 * 179.75035 * 17 16 15 28 28 H 1.08009 * 119.97583 * 179.97438 * 18 17 16 29 29 H 1.08000 * 120.03441 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 3.0927 1.6964 -1.2126 5 1 1.2741 2.7464 0.0006 6 1 3.0929 1.6962 1.2125 7 6 2.0073 -1.2164 -0.0005 8 1 3.0873 -1.2165 -0.0010 9 6 1.3056 -2.4319 -0.0016 10 7 1.8310 -3.6573 0.0031 11 6 0.7889 -4.4928 -0.0034 12 6 0.8585 -5.9982 -0.0047 13 8 0.8811 -6.4728 -1.3525 14 6 0.9429 -7.8184 -1.5318 15 6 0.9867 -8.6645 -0.4331 16 6 1.0442 -10.0323 -0.6180 17 6 1.0686 -10.5578 -1.8966 18 6 1.0307 -9.7165 -2.9932 19 6 0.9677 -8.3482 -2.8137 20 7 -0.2999 -3.7743 -0.0027 21 8 -0.0324 -2.5913 -0.0017 22 1 -0.4851 0.8400 0.0004 23 1 -0.0140 -6.4027 0.5084 24 1 1.7642 -6.3205 0.5091 25 1 0.9722 -8.2543 0.5658 26 1 1.0739 -10.6916 0.2370 27 1 1.1177 -11.6273 -2.0391 28 1 1.0503 -10.1294 -3.9910 29 1 0.9385 -7.6914 -3.6705 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236237730.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:13 Heat of formation + Delta-G solvation = 15.304906 kcal Electronic energy + Delta-G solvation = -16409.213270 eV Core-core repulsion = 13492.530883 eV Total energy + Delta-G solvation = -2916.682387 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.21090 -41.11064 -38.47344 -36.14259 -35.77276 -32.90931 -31.96985 -30.90640 -28.96549 -28.42039 -23.99943 -23.66092 -23.24540 -22.37915 -19.74643 -19.40254 -17.95823 -17.52172 -17.27421 -16.93871 -16.76997 -16.39768 -15.46918 -15.18679 -14.77844 -14.34047 -13.83979 -13.76962 -13.50883 -13.28885 -13.09803 -12.50444 -12.37855 -12.11603 -12.08049 -11.99417 -11.79192 -11.48696 -11.13758 -10.46283 -9.96367 -9.21818 -8.99821 -7.16968 0.38343 0.47244 0.81336 1.30704 1.40605 1.59709 1.79335 2.14472 2.44186 2.83843 2.97258 3.12185 3.33766 3.66937 3.81908 3.98017 4.02370 4.28672 4.47599 4.52525 4.53802 4.71716 4.89390 5.08103 5.23291 5.36504 5.47148 5.58145 5.77529 5.86120 5.97596 6.18238 6.37253 6.38356 8.00996 8.15680 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.064969 B = 0.004081 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.868610 B = 6858.677114 C = 6939.968235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.027 3.973 3 Si 1.025 2.975 4 H -0.251 1.251 5 H -0.258 1.258 6 H -0.248 1.248 7 C -0.427 4.427 8 H 0.126 0.874 9 C 0.269 3.731 10 N -0.630 5.630 11 C 0.157 3.843 12 C 0.179 3.821 13 O -0.337 6.337 14 C 0.100 3.900 15 C -0.221 4.221 16 C -0.080 4.080 17 C -0.158 4.158 18 C -0.079 4.079 19 C -0.175 4.175 20 N -0.476 5.476 21 O 0.021 5.979 22 H 0.308 0.692 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.135 0.865 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 -11.762 -1.609 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.195 4.195 3 Si 0.841 3.159 4 H -0.175 1.175 5 H -0.182 1.182 6 H -0.172 1.172 7 C -0.464 4.464 8 H 0.143 0.857 9 C 0.081 3.919 10 N -0.376 5.376 11 C -0.118 4.118 12 C 0.102 3.898 13 O -0.251 6.251 14 C 0.056 3.944 15 C -0.239 4.239 16 C -0.098 4.098 17 C -0.176 4.176 18 C -0.096 4.096 19 C -0.193 4.193 20 N -0.211 5.211 21 O -0.024 6.024 22 H 0.120 0.880 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.153 0.847 26 H 0.172 0.828 27 H 0.175 0.825 28 H 0.175 0.825 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.870 -12.102 -1.743 12.369 hybrid contribution 0.020 0.998 0.184 1.015 sum 1.889 -11.104 -1.559 11.371 Atomic orbital electron populations 1.69673 1.09815 1.33306 1.29147 1.27458 0.95961 1.05923 0.90190 0.84617 0.78217 0.72117 0.80979 1.17454 1.18197 1.17173 1.19183 0.95919 0.85911 1.45368 0.85660 1.24849 0.80030 0.95107 0.91886 1.72211 1.28946 0.98838 1.37583 1.25155 0.86068 0.98690 1.01861 1.20441 1.03688 0.83307 0.82326 1.86081 1.88810 1.21222 1.28962 1.19512 0.97609 0.81339 0.95973 1.21528 1.08965 0.95512 0.97935 1.21346 0.95997 0.93467 0.98976 1.21497 1.02783 1.01417 0.91898 1.21317 0.96347 0.90935 1.01032 1.20712 1.07479 0.96903 0.94237 1.74254 1.25405 0.91061 1.30376 1.85481 1.26255 1.18281 1.72365 0.88008 0.88669 0.88332 0.84722 0.82795 0.82528 0.82496 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.38 12.06 21.91 0.26 -40.12 15 2 C 0.03 1.29 5.50 85.43 0.47 1.76 15 3 Si 1.02 34.20 29.56 68.60 2.03 36.23 15 4 H -0.25 -8.05 7.11 99.48 0.71 -7.34 15 5 H -0.26 -7.95 7.11 99.48 0.71 -7.24 15 6 H -0.25 -7.86 7.11 99.48 0.71 -7.15 15 7 C -0.43 -22.85 9.48 23.33 0.22 -22.63 15 8 H 0.13 6.21 7.85 -2.91 -0.02 6.19 15 9 C 0.27 16.00 7.82 85.06 0.66 16.67 15 10 N -0.63 -36.51 11.61 -305.22 -3.54 -40.05 15 11 C 0.16 8.42 7.81 138.60 1.08 9.50 15 12 C 0.18 7.36 5.36 71.24 0.38 7.74 15 13 O -0.34 -14.23 10.12 -92.39 -0.93 -15.16 15 14 C 0.10 3.37 6.69 22.51 0.15 3.52 15 15 C -0.22 -6.00 9.04 22.37 0.20 -5.80 15 16 C -0.08 -1.64 10.04 22.25 0.22 -1.42 15 17 C -0.16 -2.90 10.04 22.28 0.22 -2.67 15 18 C -0.08 -1.65 10.04 22.25 0.22 -1.43 15 19 C -0.17 -5.07 9.99 22.37 0.22 -4.85 15 20 N -0.48 -27.71 12.15 -56.63 -0.69 -28.40 15 21 O 0.02 1.29 9.74 64.23 0.63 1.92 15 22 H 0.31 13.64 8.29 -92.71 -0.77 12.88 15 23 H 0.10 3.43 7.67 -2.39 -0.02 3.42 15 24 H 0.10 3.60 7.65 -2.39 -0.02 3.58 15 25 H 0.13 3.36 6.30 -2.91 -0.02 3.34 15 26 H 0.15 2.14 8.06 -2.91 -0.02 2.12 15 27 H 0.16 1.76 8.06 -2.91 -0.02 1.73 15 28 H 0.16 2.25 8.06 -2.91 -0.02 2.23 15 29 H 0.12 3.57 8.06 -2.91 -0.02 3.54 15 Total: -1.00 -70.90 268.37 3.00 -67.90 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 1.18 Total: 17.28 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 4.07 Total: 0.40 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -3.97 Total: -108.57 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.31 Total: -13.25 kcal Atomic # 14 Polarization: 34.20 SS G_CDS: 2.03 Total: 36.23 kcal Total: -70.90 3.00 -67.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236237730.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.208 kcal (2) G-P(sol) polarization free energy of solvation -70.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds