Wall clock time and date at job start Mon Mar 30 2020 03:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 S 1.65597 * 119.99912 * 180.27700 * 9 7 2 11 11 O 1.42096 * 106.40195 * 178.26333 * 10 9 7 12 12 O 1.42108 * 106.40105 * 311.18390 * 10 9 7 13 13 C 1.76199 * 107.22117 * 64.72090 * 10 9 7 14 14 N 1.31870 * 119.63786 * 89.99738 * 13 10 9 15 15 C 1.31846 * 121.75480 * 179.97438 * 14 13 10 16 16 C 1.38235 * 120.81826 * 0.02562 * 15 14 13 17 17 C 1.38585 * 119.19013 * 359.97438 * 16 15 14 18 18 C 1.38425 * 119.64033 * 269.73052 * 13 10 9 19 19 F 1.35102 * 120.43939 * 359.97438 * 18 13 10 20 20 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 22 22 H 1.07998 * 119.59257 * 179.97438 * 15 14 13 23 23 H 1.08000 * 120.40622 * 180.02562 * 16 15 14 24 24 H 1.07999 * 120.80179 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 16 2.1534 -3.8222 0.0081 11 8 1.1738 -4.8508 0.0477 12 8 3.1361 -3.7236 -1.0137 13 6 3.0296 -3.9107 1.5342 14 7 2.4541 -4.4602 2.5857 15 6 3.0713 -4.5488 3.7475 16 6 4.3559 -4.0633 3.9057 17 6 4.9954 -3.4784 2.8243 18 6 4.3167 -3.4075 1.6148 19 9 4.9030 -2.8510 0.5323 20 1 -0.4850 0.8401 -0.0004 21 1 0.3555 -2.3880 0.0005 22 1 2.5667 -5.0054 4.5860 23 1 4.8554 -4.1397 4.8602 24 1 5.9991 -3.0910 2.9187 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236242472.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:44 Heat of formation + Delta-G solvation = -103.644531 kcal Electronic energy + Delta-G solvation = -15997.871417 eV Core-core repulsion = 12952.181547 eV Total energy + Delta-G solvation = -3045.689870 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.026 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.22301 -40.97149 -38.03998 -36.74324 -36.57469 -33.63703 -32.94006 -32.07935 -26.52330 -25.49101 -24.60628 -20.60846 -20.12943 -19.30286 -18.60449 -18.41544 -18.11398 -16.93975 -16.55052 -16.25277 -16.10572 -15.35270 -15.07205 -14.67149 -14.27695 -13.89013 -13.80027 -13.16318 -13.04652 -13.04377 -12.89629 -12.45194 -12.30110 -12.07447 -11.88048 -11.10739 -10.69684 -10.36328 -10.21701 -8.40967 -5.95809 -0.64083 -0.34077 -0.02533 1.44704 1.47756 1.59442 2.14302 2.34805 2.56454 2.83938 2.86892 3.06561 3.18896 3.62361 3.86070 4.03891 4.13404 4.44891 4.72402 4.84793 5.01812 5.46118 5.52592 6.54744 6.66398 6.84188 7.23205 8.77023 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.010615 C = 0.009214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.259633 B = 2637.111695 C = 3037.959704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.013 4.013 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.311 4.311 8 H 0.106 0.894 9 N -0.958 5.958 10 S 2.649 3.351 11 O -0.999 6.999 12 O -0.979 6.979 13 C -0.494 4.494 14 N -0.409 5.409 15 C 0.057 3.943 16 C -0.074 4.074 17 C -0.127 4.127 18 C 0.109 3.891 19 F -0.119 7.119 20 H 0.277 0.723 21 H 0.408 0.592 22 H 0.209 0.791 23 H 0.210 0.790 24 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.902 -3.489 10.634 14.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.216 4.216 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.447 4.447 8 H 0.123 0.877 9 N -0.711 5.711 10 S 2.738 3.262 11 O -0.988 6.988 12 O -0.969 6.969 13 C -0.710 4.710 14 N -0.119 5.119 15 C -0.106 4.106 16 C -0.093 4.093 17 C -0.154 4.154 18 C 0.086 3.914 19 F -0.098 7.098 20 H 0.086 0.914 21 H 0.243 0.757 22 H 0.226 0.774 23 H 0.227 0.773 24 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.180 -4.428 9.829 14.159 hybrid contribution 0.677 1.339 0.256 1.522 sum 9.857 -3.089 10.085 14.436 Atomic orbital electron populations 1.69805 1.07294 1.29132 1.49499 1.26109 0.96484 1.02503 0.96552 0.84990 0.78835 0.77133 0.78269 1.18119 1.20016 1.19648 1.19621 0.92456 0.83613 1.49040 0.87665 1.51524 1.16792 1.19303 1.83466 1.04534 0.72967 0.73047 0.75694 1.93409 1.59970 1.57562 1.87890 1.93514 1.61891 1.87137 1.54326 1.34185 1.04924 1.10191 1.21686 1.67738 1.35651 1.09318 0.99183 1.24011 0.94052 0.97398 0.95091 1.22931 0.94453 0.91314 1.00598 1.22296 1.03097 0.99921 0.90046 1.18765 0.91922 0.94580 0.86177 1.91625 1.83197 1.81881 1.53053 0.91353 0.75682 0.77432 0.77348 0.79093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.33 13.06 21.65 0.28 -50.04 14 2 C -0.01 -0.69 5.50 84.86 0.47 -0.22 14 3 Si 0.99 40.79 29.55 68.60 2.03 42.82 14 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 14 5 H -0.27 -11.18 7.11 99.48 0.71 -10.48 14 6 H -0.27 -10.75 7.11 99.48 0.71 -10.05 14 7 C -0.31 -16.57 9.63 84.03 0.81 -15.76 14 8 H 0.11 5.44 7.14 -2.91 -0.02 5.42 14 9 N -0.96 -50.12 5.75 -54.26 -0.31 -50.43 14 10 S 2.65 129.36 5.71 -56.49 -0.32 129.04 14 11 O -1.00 -51.85 17.85 -128.00 -2.29 -54.13 14 12 O -0.98 -50.95 15.88 -128.00 -2.03 -52.98 14 13 C -0.49 -20.66 6.78 84.73 0.57 -20.09 14 14 N -0.41 -15.41 10.11 -193.13 -1.95 -17.36 14 15 C 0.06 1.40 11.18 84.69 0.95 2.34 14 16 C -0.07 -1.32 10.11 22.35 0.23 -1.10 14 17 C -0.13 -3.03 10.16 22.51 0.23 -2.80 14 18 C 0.11 3.99 7.24 22.47 0.16 4.15 14 19 F -0.12 -4.84 14.67 44.97 0.66 -4.18 14 20 H 0.28 14.17 8.31 -92.71 -0.77 13.40 14 21 H 0.41 21.83 8.02 -96.74 -0.78 21.06 14 22 H 0.21 3.16 8.06 -2.91 -0.02 3.14 14 23 H 0.21 1.20 8.06 -2.91 -0.02 1.18 14 24 H 0.19 2.92 8.06 -2.91 -0.02 2.90 14 Total: -1.00 -73.61 242.16 -0.04 -73.64 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.48 Total: 17.09 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 3.41 Total: -33.47 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -1.98 Total: -117.83 kcal Atomic # 8 Polarization: -102.80 SS G_CDS: -4.32 Total: -107.11 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.66 Total: -4.18 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 129.36 SS G_CDS: -0.32 Total: 129.04 kcal Total: -73.61 -0.04 -73.64 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236242472.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.000 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds