Wall clock time and date at job start Mon Mar 30 2020 03:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48503 * 109.46974 * 270.00735 * 3 2 1 5 5 H 1.48498 * 109.46824 * 30.00134 * 3 2 1 6 6 H 1.48496 * 109.47023 * 150.00264 * 3 2 1 7 7 C 1.37874 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00451 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47121 * 180.02562 * 9 7 2 11 11 N 1.30982 * 126.43685 * 90.30002 * 10 9 7 12 12 C 1.35213 * 105.57582 * 180.13762 * 11 10 9 13 13 C 1.48435 * 126.41053 * 179.84833 * 12 11 10 14 14 C 1.39369 * 120.09245 * 359.71146 * 13 12 11 15 15 C 1.38024 * 119.99015 * 180.28072 * 14 13 12 16 16 C 1.38254 * 120.18149 * 359.51128 * 15 14 13 17 17 C 1.38789 * 120.18151 * 0.46617 * 16 15 14 18 18 O 1.35909 * 119.99420 * 179.76416 * 17 16 15 19 19 C 1.38549 * 120.00655 * 359.79173 * 17 16 15 20 20 N 1.30753 * 107.17750 * 359.58425 * 12 11 10 21 21 O 1.21293 * 110.09574 * 0.26145 * 20 12 11 22 22 H 0.97000 * 120.00479 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46524 * 60.00028 * 9 7 2 24 24 H 1.08999 * 109.46698 * 300.00533 * 9 7 2 25 25 H 1.08002 * 120.00178 * 359.97438 * 14 13 12 26 26 H 1.08001 * 119.91248 * 179.72563 * 15 14 13 27 27 H 1.07994 * 119.91122 * 180.21146 * 16 15 14 28 28 H 0.96697 * 113.99965 * 270.02581 * 18 17 16 29 29 H 1.08005 * 120.08788 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 7 2.7317 -4.2394 1.0532 12 6 3.5571 -5.1960 0.5717 13 6 4.3688 -6.1450 1.3743 14 6 4.3271 -6.0962 2.7665 15 6 5.0872 -6.9757 3.5107 16 6 5.8832 -7.9131 2.8789 17 6 5.9299 -7.9685 1.4929 18 8 6.7174 -8.8884 0.8759 19 6 5.1742 -7.0858 0.7384 20 7 3.5021 -5.1326 -0.7331 21 8 2.7459 -4.2483 -1.0758 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 3.7040 -5.3670 3.2629 26 1 5.0574 -6.9339 4.5895 27 1 6.4735 -8.6014 3.4655 28 1 7.6163 -8.5801 0.6973 29 1 5.2098 -7.1275 -0.3403 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236573794.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:08 Heat of formation + Delta-G solvation = 40.145296 kcal Electronic energy + Delta-G solvation = -16364.764347 eV Core-core repulsion = 13449.159120 eV Total energy + Delta-G solvation = -2915.605227 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.81013 -39.77211 -37.00004 -35.12158 -33.90547 -32.32469 -30.67681 -29.81220 -28.43574 -24.45721 -24.14704 -22.79286 -21.98844 -20.56413 -18.45875 -17.55579 -16.79289 -16.36524 -16.26443 -15.62390 -15.39599 -14.78291 -14.29131 -13.70096 -13.30820 -12.78796 -12.55603 -12.45449 -12.12679 -11.75149 -11.42092 -11.24448 -11.00831 -10.82566 -10.74483 -10.40699 -10.20795 -10.02761 -9.30352 -8.89536 -8.64967 -8.50555 -6.28390 -4.34430 0.77543 1.15505 2.01047 2.88684 3.22058 3.28526 3.32953 3.62228 3.68893 3.86823 4.14989 4.29335 4.57472 4.89873 4.91409 5.10370 5.19127 5.37975 5.56331 5.70215 5.85246 6.18729 6.26493 6.38875 6.50014 6.58754 6.65031 7.07396 7.13706 7.45612 7.64794 7.87509 8.65802 8.81732 9.30744 10.81973 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040291 B = 0.004536 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.773134 B = 6171.727835 C = 6358.294219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.100 3.900 10 C 0.243 3.757 11 N -0.499 5.499 12 C 0.192 3.808 13 C 0.012 3.988 14 C -0.085 4.085 15 C -0.107 4.107 16 C -0.135 4.135 17 C 0.099 3.901 18 O -0.498 6.498 19 C -0.115 4.115 20 N -0.397 5.397 21 O 0.068 5.932 22 H 0.268 0.732 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.141 0.859 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.390 0.610 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.819 -11.999 4.378 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.080 0.920 9 C 0.062 3.938 10 C 0.025 3.975 11 N -0.232 5.232 12 C -0.078 4.078 13 C 0.011 3.989 14 C -0.105 4.105 15 C -0.125 4.125 16 C -0.154 4.154 17 C 0.054 3.946 18 O -0.307 6.307 19 C -0.135 4.135 20 N -0.108 5.108 21 O 0.010 5.990 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.159 0.841 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.245 0.755 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.625 -12.813 4.292 16.590 hybrid contribution 0.767 1.303 -0.138 1.518 sum 10.392 -11.510 4.154 16.054 Atomic orbital electron populations 1.69916 1.06032 1.27681 1.48815 1.24922 0.95000 0.99457 0.94291 0.86346 0.79728 0.82170 0.78416 1.20247 1.20825 1.19670 1.20787 0.93258 0.88802 1.53559 0.92025 1.18254 0.89805 0.84415 1.01376 1.30145 0.94238 0.94441 0.78627 1.72052 1.13001 1.09038 1.29107 1.23803 0.98764 0.97252 0.88020 1.17233 0.95995 0.93668 0.92039 1.21344 0.98223 0.98750 0.92201 1.20992 0.96316 0.94910 1.00266 1.21522 1.00855 0.99331 0.93739 1.18216 0.95503 0.90593 0.90243 1.84836 1.26820 1.39062 1.80028 1.21439 0.97098 0.93885 1.01078 1.74758 1.12440 1.08769 1.14832 1.85249 1.42869 1.34194 1.36675 0.92212 0.92207 0.91162 0.84082 0.84820 0.85165 0.75470 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 13.29 55.43 0.74 -23.62 15 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 15 3 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 15 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.53 -13.94 9.09 -34.44 -0.31 -14.25 15 8 H 0.06 1.65 7.74 -52.48 -0.41 1.25 15 9 C 0.10 2.42 5.60 -29.04 -0.16 2.26 15 10 C 0.24 5.47 7.69 -12.99 -0.10 5.37 15 11 N -0.50 -10.92 11.26 -9.89 -0.11 -11.03 15 12 C 0.19 3.84 7.80 -156.12 -1.22 2.63 15 13 C 0.01 0.21 5.87 -104.91 -0.62 -0.41 15 14 C -0.09 -1.21 9.70 -39.24 -0.38 -1.60 15 15 C -0.11 -1.19 10.03 -39.65 -0.40 -1.58 15 16 C -0.14 -1.45 9.98 -39.37 -0.39 -1.84 15 17 C 0.10 1.21 6.70 -39.26 -0.26 0.94 15 18 O -0.50 -5.22 13.50 -19.45 -0.26 -5.48 15 19 C -0.11 -1.67 9.63 -39.10 -0.38 -2.05 15 20 N -0.40 -8.23 11.86 30.96 0.37 -7.86 15 21 O 0.07 1.46 11.29 18.05 0.20 1.67 15 22 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 23 H 0.06 1.43 8.14 -51.93 -0.42 1.01 15 24 H 0.07 1.75 8.14 -51.93 -0.42 1.32 15 25 H 0.14 2.04 7.87 -52.49 -0.41 1.63 15 26 H 0.13 1.09 8.06 -52.49 -0.42 0.67 15 27 H 0.13 1.07 8.06 -52.49 -0.42 0.64 15 28 H 0.39 2.14 9.06 45.56 0.41 2.56 15 29 H 0.14 2.00 7.87 -52.48 -0.41 1.59 15 LS Contribution 272.85 15.07 4.11 4.11 Total: -1.00 -29.77 272.85 -5.94 -35.71 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -1.65 Total: -0.17 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -4.32 Total: -8.85 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.99 Total: -42.51 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.06 Total: -3.81 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.77 -5.94 -35.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236573794.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.856 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds