Wall clock time and date at job start Mon Mar 30 2020 03:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48503 * 109.46974 * 270.00735 * 3 2 1 5 5 H 1.48498 * 109.46824 * 30.00134 * 3 2 1 6 6 H 1.48496 * 109.47023 * 150.00264 * 3 2 1 7 7 C 1.37874 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00451 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47121 * 180.02562 * 9 7 2 11 11 N 1.30982 * 126.43685 * 90.30002 * 10 9 7 12 12 C 1.35213 * 105.57582 * 180.13762 * 11 10 9 13 13 C 1.48435 * 126.41053 * 179.84833 * 12 11 10 14 14 C 1.39369 * 120.09245 * 359.71146 * 13 12 11 15 15 C 1.38024 * 119.99015 * 180.28072 * 14 13 12 16 16 C 1.38254 * 120.18149 * 359.51128 * 15 14 13 17 17 C 1.38789 * 120.18151 * 0.46617 * 16 15 14 18 18 O 1.35909 * 119.99420 * 179.76416 * 17 16 15 19 19 C 1.38549 * 120.00655 * 359.79173 * 17 16 15 20 20 N 1.30753 * 107.17750 * 359.58425 * 12 11 10 21 21 O 1.21293 * 110.09574 * 0.26145 * 20 12 11 22 22 H 0.97000 * 120.00479 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46524 * 60.00028 * 9 7 2 24 24 H 1.08999 * 109.46698 * 300.00533 * 9 7 2 25 25 H 1.08002 * 120.00178 * 359.97438 * 14 13 12 26 26 H 1.08001 * 119.91248 * 179.72563 * 15 14 13 27 27 H 1.07994 * 119.91122 * 180.21146 * 16 15 14 28 28 H 0.96697 * 113.99965 * 270.02581 * 18 17 16 29 29 H 1.08005 * 120.08788 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 7 2.7317 -4.2394 1.0532 12 6 3.5571 -5.1960 0.5717 13 6 4.3688 -6.1450 1.3743 14 6 4.3271 -6.0962 2.7665 15 6 5.0872 -6.9757 3.5107 16 6 5.8832 -7.9131 2.8789 17 6 5.9299 -7.9685 1.4929 18 8 6.7174 -8.8884 0.8759 19 6 5.1742 -7.0858 0.7384 20 7 3.5021 -5.1326 -0.7331 21 8 2.7459 -4.2483 -1.0758 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 3.7040 -5.3670 3.2629 26 1 5.0574 -6.9339 4.5895 27 1 6.4735 -8.6014 3.4655 28 1 7.6163 -8.5801 0.6973 29 1 5.2098 -7.1275 -0.3403 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236573794.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:08 Heat of formation + Delta-G solvation = 19.028935 kcal Electronic energy + Delta-G solvation = -16365.680021 eV Core-core repulsion = 13449.159120 eV Total energy + Delta-G solvation = -2916.520901 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.47117 -40.74210 -37.99282 -36.72005 -35.74228 -34.03000 -31.95103 -30.82725 -30.28841 -26.07634 -25.79175 -24.15405 -23.18340 -22.00031 -19.56249 -19.31397 -18.37483 -18.09894 -17.40486 -16.90237 -16.46940 -16.39932 -15.45509 -15.07423 -14.67540 -14.47933 -14.14416 -13.94850 -13.37211 -13.08346 -12.96654 -12.82881 -12.62781 -12.56937 -12.19050 -12.00639 -11.88953 -11.62438 -11.00809 -10.68345 -9.95143 -9.66146 -8.32088 -6.45671 -0.42226 0.18376 0.39196 1.40016 1.43737 1.45481 1.55546 1.92738 2.37689 2.46937 2.63108 2.96613 3.06050 3.27555 3.85358 3.96633 4.12502 4.24756 4.41215 4.57216 4.77900 4.80395 4.89332 5.07337 5.16636 5.27320 5.31239 5.41115 5.57383 5.70598 5.85723 6.58482 6.78587 7.12779 7.23223 8.78750 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040291 B = 0.004536 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.773134 B = 6171.727835 C = 6358.294219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.110 3.890 10 C 0.236 3.764 11 N -0.509 5.509 12 C 0.200 3.800 13 C -0.024 4.024 14 C -0.096 4.096 15 C -0.093 4.093 16 C -0.118 4.118 17 C 0.106 3.894 18 O -0.503 6.503 19 C -0.126 4.126 20 N -0.407 5.407 21 O 0.057 5.943 22 H 0.273 0.727 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.132 0.868 26 H 0.171 0.829 27 H 0.168 0.832 28 H 0.413 0.587 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.733 -12.926 5.840 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.071 3.929 10 C 0.017 3.983 11 N -0.243 5.243 12 C -0.070 4.070 13 C -0.026 4.026 14 C -0.116 4.116 15 C -0.111 4.111 16 C -0.136 4.136 17 C 0.061 3.939 18 O -0.316 6.316 19 C -0.146 4.146 20 N -0.121 5.121 21 O 0.004 5.996 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.149 0.851 26 H 0.188 0.812 27 H 0.185 0.815 28 H 0.273 0.727 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.545 -13.735 5.727 18.835 hybrid contribution 0.275 1.419 -0.531 1.540 sum 11.819 -12.316 5.196 17.843 Atomic orbital electron populations 1.69997 1.07281 1.28830 1.49151 1.25728 0.95835 1.02660 0.93609 0.85360 0.78376 0.78070 0.78753 1.19382 1.19881 1.19631 1.21003 0.93056 0.90156 1.54145 0.92899 1.17965 0.89860 0.84542 1.00542 1.29776 0.94608 0.94599 0.79307 1.72033 1.13529 1.09661 1.29102 1.24473 0.97822 0.96741 0.87979 1.17394 0.97723 0.94654 0.92855 1.21416 0.99115 0.99682 0.91368 1.21366 0.94501 0.93354 1.01855 1.21931 0.99746 0.98833 0.93131 1.18266 0.95028 0.89719 0.90883 1.84784 1.28317 1.38579 1.79950 1.21434 0.97789 0.94573 1.00846 1.74733 1.12952 1.08960 1.15420 1.85225 1.43308 1.34603 1.36498 0.91750 0.92610 0.92344 0.85050 0.81168 0.81474 0.72735 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.67 13.29 21.45 0.28 -50.38 15 2 C 0.02 1.21 5.46 84.65 0.46 1.67 15 3 Si 0.97 42.01 29.54 68.60 2.03 44.04 15 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 7 C -0.54 -29.58 9.09 25.60 0.23 -29.35 15 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 15 9 C 0.11 5.51 5.60 29.10 0.16 5.67 15 10 C 0.24 11.01 7.69 88.35 0.68 11.69 15 11 N -0.51 -22.99 11.26 -302.54 -3.41 -26.39 15 12 C 0.20 8.22 7.80 137.31 1.07 9.29 15 13 C -0.02 -0.80 5.87 -20.05 -0.12 -0.92 15 14 C -0.10 -2.61 9.70 22.49 0.22 -2.39 15 15 C -0.09 -1.73 10.03 22.22 0.22 -1.51 15 16 C -0.12 -2.01 9.98 22.41 0.22 -1.78 15 17 C 0.11 2.29 6.70 22.48 0.15 2.44 15 18 O -0.50 -8.94 13.50 -92.52 -1.25 -10.19 15 19 C -0.13 -3.58 9.63 22.58 0.22 -3.36 15 20 N -0.41 -17.41 11.86 -59.16 -0.70 -18.12 15 21 O 0.06 2.58 11.29 74.66 0.84 3.42 15 22 H 0.27 14.14 8.31 -92.71 -0.77 13.37 15 23 H 0.06 2.80 8.14 -2.39 -0.02 2.78 15 24 H 0.06 3.04 8.14 -2.39 -0.02 3.02 15 25 H 0.13 3.77 7.87 -2.91 -0.02 3.75 15 26 H 0.17 1.93 8.06 -2.91 -0.02 1.90 15 27 H 0.17 1.70 8.06 -2.91 -0.02 1.68 15 28 H 0.41 3.14 9.06 -74.06 -0.67 2.47 15 29 H 0.12 3.71 7.87 -2.91 -0.02 3.69 15 Total: -1.00 -64.64 272.85 1.85 -62.79 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 0.52 Total: 3.37 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 3.52 Total: -8.54 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -3.82 Total: -94.89 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.41 Total: -6.77 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -64.64 1.85 -62.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236573794.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.824 kcal (2) G-P(sol) polarization free energy of solvation -64.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds