Wall clock time and date at job start Mon Mar 30 2020 03:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99929 * 2 1 4 4 H 1.48498 * 109.47101 * 269.99244 * 3 2 1 5 5 H 1.48500 * 109.47192 * 29.99635 * 3 2 1 6 6 H 1.48506 * 109.46904 * 149.99693 * 3 2 1 7 7 C 1.37875 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00325 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47069 * 179.97438 * 9 7 2 11 11 N 1.30974 * 126.43079 * 89.99751 * 10 9 7 12 12 C 1.35239 * 105.57727 * 180.02562 * 11 10 9 13 13 C 1.48342 * 126.42039 * 179.97438 * 12 11 10 14 14 C 1.39400 * 120.06166 * 359.72099 * 13 12 11 15 15 C 1.37872 * 119.93764 * 179.74236 * 14 13 12 16 16 C 1.38864 * 120.06092 * 0.56202 * 15 14 13 17 17 O 1.35834 * 119.93937 * 179.71625 * 16 15 14 18 18 C 1.38866 * 120.12687 * 359.69567 * 16 15 14 19 19 C 1.37869 * 120.06564 * 0.02562 * 18 16 15 20 20 N 1.30808 * 107.16270 * 0.02562 * 12 11 10 21 21 O 1.21284 * 110.08661 * 359.97438 * 20 12 11 22 22 H 0.96999 * 119.99713 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47891 * 59.99701 * 9 7 2 24 24 H 1.09003 * 109.47410 * 299.99351 * 9 7 2 25 25 H 1.08001 * 120.03417 * 0.02892 * 14 13 12 26 26 H 1.08000 * 119.97083 * 180.25585 * 15 14 13 27 27 H 0.96698 * 113.99904 * 269.98058 * 17 16 15 28 28 H 1.08007 * 119.96902 * 179.97438 * 18 16 15 29 29 H 1.08003 * 120.03281 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.7358 -4.2358 1.0543 12 6 3.5575 -5.1960 0.5729 13 6 4.3690 -6.1440 1.3749 14 6 4.3315 -6.0908 2.7673 15 6 5.0827 -6.9767 3.5102 16 6 5.8851 -7.9136 2.8726 17 8 6.6286 -8.7814 3.6069 18 6 5.9286 -7.9655 1.4856 19 6 5.1751 -7.0859 0.7376 20 7 3.5034 -5.1315 -0.7325 21 8 2.7469 -4.2474 -1.0748 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 3.7111 -5.3594 3.2639 26 1 5.0509 -6.9386 4.5891 27 1 7.5149 -8.4581 3.8191 28 1 6.5538 -8.6950 0.9922 29 1 5.2090 -7.1270 -0.3412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236605156.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:36 Heat of formation + Delta-G solvation = 39.682709 kcal Electronic energy + Delta-G solvation = -16313.264086 eV Core-core repulsion = 13397.638800 eV Total energy + Delta-G solvation = -2915.625286 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.78862 -39.78676 -37.08418 -35.05901 -33.82273 -32.13305 -31.16959 -29.71125 -28.39774 -24.24022 -24.06372 -22.88739 -22.03384 -20.52704 -18.59412 -17.54765 -17.24274 -16.32054 -15.93545 -15.57255 -15.41407 -14.76822 -14.08666 -13.58685 -13.31679 -12.88974 -12.58446 -12.50991 -12.17870 -11.97623 -11.41554 -11.18509 -10.99227 -10.82326 -10.67700 -10.36552 -10.19171 -10.00530 -9.23228 -9.15406 -8.64669 -8.37454 -6.28203 -4.34162 0.72049 1.23318 2.00304 2.87427 3.22159 3.28619 3.33076 3.67664 3.68448 3.95883 4.05663 4.29578 4.52499 4.81921 4.92579 5.10516 5.24363 5.44152 5.55977 5.69537 5.90201 6.12169 6.24143 6.39544 6.53155 6.57597 6.65090 7.07773 7.14131 7.41932 7.65088 7.87834 8.66112 8.83098 9.30951 10.82131 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040228 B = 0.004449 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.866683 B = 6291.490999 C = 6572.782624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.100 3.900 10 C 0.243 3.757 11 N -0.500 5.500 12 C 0.194 3.806 13 C -0.013 4.013 14 C -0.060 4.060 15 C -0.148 4.148 16 C 0.112 3.888 17 O -0.500 6.500 18 C -0.149 4.149 19 C -0.072 4.072 20 N -0.399 5.399 21 O 0.067 5.933 22 H 0.268 0.732 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.143 0.857 26 H 0.135 0.865 27 H 0.391 0.609 28 H 0.133 0.867 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.862 -12.060 4.320 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.080 0.920 9 C 0.062 3.938 10 C 0.025 3.975 11 N -0.234 5.234 12 C -0.076 4.076 13 C -0.015 4.015 14 C -0.080 4.080 15 C -0.166 4.166 16 C 0.067 3.933 17 O -0.310 6.310 18 C -0.167 4.167 19 C -0.092 4.092 20 N -0.110 5.110 21 O 0.010 5.990 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.161 0.839 26 H 0.152 0.848 27 H 0.247 0.753 28 H 0.151 0.849 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.677 -12.868 4.173 16.632 hybrid contribution 0.762 1.309 -0.015 1.515 sum 10.439 -11.558 4.158 16.120 Atomic orbital electron populations 1.69924 1.06024 1.27667 1.48832 1.24928 0.95005 0.99463 0.94307 0.86344 0.79724 0.82170 0.78409 1.20253 1.20828 1.19676 1.20783 0.93252 0.88805 1.53524 0.92031 1.18253 0.89819 0.84423 1.01354 1.30134 0.94232 0.94450 0.78652 1.72058 1.13103 1.09064 1.29126 1.23818 0.98698 0.97085 0.88027 1.17444 0.97185 0.94746 0.92101 1.21188 0.97070 0.97612 0.92166 1.21358 0.99106 0.95373 1.00777 1.18604 0.94833 0.90339 0.89522 1.84792 1.30132 1.43070 1.73027 1.21282 1.01944 1.00411 0.93081 1.21073 0.94266 0.93271 1.00603 1.74760 1.12602 1.08875 1.14803 1.85240 1.42835 1.34309 1.36664 0.92222 0.92237 0.91181 0.83926 0.84753 0.75325 0.84908 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 13.29 55.43 0.74 -23.62 15 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 15 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.52 -13.92 9.09 -34.44 -0.31 -14.24 15 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 9 C 0.10 2.42 5.60 -29.03 -0.16 2.26 15 10 C 0.24 5.46 7.69 -12.98 -0.10 5.36 15 11 N -0.50 -10.93 11.25 -9.88 -0.11 -11.04 15 12 C 0.19 3.85 7.80 -156.10 -1.22 2.63 15 13 C -0.01 -0.21 5.88 -104.88 -0.62 -0.83 15 14 C -0.06 -0.87 9.69 -39.28 -0.38 -1.25 15 15 C -0.15 -1.75 9.97 -39.48 -0.39 -2.14 15 16 C 0.11 1.27 6.71 -39.12 -0.26 1.01 15 17 O -0.50 -4.71 13.49 -19.22 -0.26 -4.97 15 18 C -0.15 -1.71 9.97 -39.48 -0.39 -2.11 15 19 C -0.07 -1.00 9.69 -39.29 -0.38 -1.38 15 20 N -0.40 -8.16 11.85 30.97 0.37 -7.80 15 21 O 0.07 1.43 11.29 18.05 0.20 1.64 15 22 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 23 H 0.06 1.43 8.14 -51.93 -0.42 1.00 15 24 H 0.07 1.74 8.14 -51.93 -0.42 1.32 15 25 H 0.14 2.09 7.87 -52.49 -0.41 1.67 15 26 H 0.13 1.30 8.06 -52.49 -0.42 0.87 15 27 H 0.39 1.73 9.06 45.56 0.41 2.14 15 28 H 0.13 1.22 8.06 -52.48 -0.42 0.79 15 29 H 0.13 1.79 7.86 -52.48 -0.41 1.38 15 LS Contribution 272.83 15.07 4.11 4.11 Total: -1.00 -29.65 272.83 -5.93 -35.59 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -1.64 Total: -0.42 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -4.32 Total: -9.02 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.99 Total: -42.45 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: -0.06 Total: -3.34 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.65 -5.93 -35.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236605156.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.270 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds