Wall clock time and date at job start Mon Mar 30 2020 03:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99929 * 2 1 4 4 H 1.48498 * 109.47101 * 269.99244 * 3 2 1 5 5 H 1.48500 * 109.47192 * 29.99635 * 3 2 1 6 6 H 1.48506 * 109.46904 * 149.99693 * 3 2 1 7 7 C 1.37875 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00325 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47069 * 179.97438 * 9 7 2 11 11 N 1.30974 * 126.43079 * 89.99751 * 10 9 7 12 12 C 1.35239 * 105.57727 * 180.02562 * 11 10 9 13 13 C 1.48342 * 126.42039 * 179.97438 * 12 11 10 14 14 C 1.39400 * 120.06166 * 359.72099 * 13 12 11 15 15 C 1.37872 * 119.93764 * 179.74236 * 14 13 12 16 16 C 1.38864 * 120.06092 * 0.56202 * 15 14 13 17 17 O 1.35834 * 119.93937 * 179.71625 * 16 15 14 18 18 C 1.38866 * 120.12687 * 359.69567 * 16 15 14 19 19 C 1.37869 * 120.06564 * 0.02562 * 18 16 15 20 20 N 1.30808 * 107.16270 * 0.02562 * 12 11 10 21 21 O 1.21284 * 110.08661 * 359.97438 * 20 12 11 22 22 H 0.96999 * 119.99713 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47891 * 59.99701 * 9 7 2 24 24 H 1.09003 * 109.47410 * 299.99351 * 9 7 2 25 25 H 1.08001 * 120.03417 * 0.02892 * 14 13 12 26 26 H 1.08000 * 119.97083 * 180.25585 * 15 14 13 27 27 H 0.96698 * 113.99904 * 269.98058 * 17 16 15 28 28 H 1.08007 * 119.96902 * 179.97438 * 18 16 15 29 29 H 1.08003 * 120.03281 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.7358 -4.2358 1.0543 12 6 3.5575 -5.1960 0.5729 13 6 4.3690 -6.1440 1.3749 14 6 4.3315 -6.0908 2.7673 15 6 5.0827 -6.9767 3.5102 16 6 5.8851 -7.9136 2.8726 17 8 6.6286 -8.7814 3.6069 18 6 5.9286 -7.9655 1.4856 19 6 5.1751 -7.0859 0.7376 20 7 3.5034 -5.1315 -0.7325 21 8 2.7469 -4.2474 -1.0748 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 3.7111 -5.3594 3.2639 26 1 5.0509 -6.9386 4.5891 27 1 7.5149 -8.4581 3.8191 28 1 6.5538 -8.6950 0.9922 29 1 5.2090 -7.1270 -0.3412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236605156.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:36 Heat of formation + Delta-G solvation = 18.842358 kcal Electronic energy + Delta-G solvation = -16314.167792 eV Core-core repulsion = 13397.638800 eV Total energy + Delta-G solvation = -2916.528992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.42871 -40.74035 -38.05498 -36.66774 -35.66851 -33.87385 -32.18805 -30.98054 -30.16347 -26.07872 -25.46581 -24.16058 -23.30906 -21.96660 -19.44262 -19.30185 -18.73244 -18.27858 -17.19799 -16.82007 -16.40029 -16.38485 -15.22413 -15.01693 -14.53037 -14.47620 -14.26764 -13.97834 -13.36434 -13.25798 -13.02771 -12.89114 -12.62226 -12.57356 -12.19632 -12.00538 -11.86679 -11.46707 -10.95508 -10.67875 -10.13640 -9.53845 -8.31709 -6.45150 -0.44484 0.25314 0.38985 1.39566 1.43867 1.45510 1.55663 1.95092 2.38629 2.54924 2.61963 2.99170 3.08803 3.19438 3.85355 3.90619 4.11345 4.24338 4.44827 4.62853 4.73198 4.84643 4.95377 5.07314 5.12817 5.26021 5.27932 5.40782 5.57901 5.66348 5.86401 6.59059 6.81507 7.15661 7.23637 8.79064 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040228 B = 0.004449 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.866683 B = 6291.490999 C = 6572.782624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.022 3.978 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.109 3.891 10 C 0.236 3.764 11 N -0.513 5.513 12 C 0.203 3.797 13 C -0.053 4.053 14 C -0.066 4.066 15 C -0.145 4.145 16 C 0.133 3.867 17 O -0.501 6.501 18 C -0.143 4.143 19 C -0.071 4.071 20 N -0.407 5.407 21 O 0.056 5.944 22 H 0.273 0.727 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.132 0.868 26 H 0.159 0.841 27 H 0.417 0.583 28 H 0.162 0.838 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.823 -13.035 5.288 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.071 0.929 9 C 0.071 3.929 10 C 0.017 3.983 11 N -0.247 5.247 12 C -0.067 4.067 13 C -0.055 4.055 14 C -0.086 4.086 15 C -0.163 4.163 16 C 0.087 3.913 17 O -0.316 6.316 18 C -0.161 4.161 19 C -0.091 4.091 20 N -0.120 5.120 21 O 0.003 5.997 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.150 0.850 26 H 0.177 0.823 27 H 0.278 0.722 28 H 0.180 0.820 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.648 -13.838 5.128 18.801 hybrid contribution 0.265 1.428 -0.203 1.467 sum 11.913 -12.410 4.925 17.894 Atomic orbital electron populations 1.70006 1.07270 1.28798 1.49197 1.25735 0.95843 1.02672 0.93647 0.85359 0.78357 0.78078 0.78756 1.19354 1.19921 1.19660 1.20998 0.93046 0.90165 1.54061 0.92906 1.17958 0.89897 0.84586 1.00497 1.29736 0.94608 0.94609 0.79353 1.72040 1.13698 1.09774 1.29178 1.24460 0.97727 0.96515 0.88010 1.17621 0.99182 0.96003 0.92709 1.21173 0.97612 0.98270 0.91567 1.21566 0.98245 0.94628 1.01864 1.18650 0.93911 0.89146 0.89590 1.84737 1.31749 1.42591 1.72508 1.21542 1.01301 1.00036 0.93262 1.21132 0.94013 0.93114 1.00855 1.74730 1.13048 1.09003 1.15251 1.85217 1.43288 1.34739 1.36448 0.91775 0.92620 0.92436 0.85006 0.82338 0.72243 0.82043 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.69 13.29 21.45 0.28 -50.40 15 2 C 0.02 1.17 5.46 84.65 0.46 1.64 15 3 Si 0.97 42.03 29.54 68.60 2.03 44.06 15 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 15 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 7 C -0.54 -29.50 9.09 25.60 0.23 -29.27 15 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 9 C 0.11 5.48 5.60 29.10 0.16 5.64 15 10 C 0.24 10.94 7.69 88.36 0.68 11.61 15 11 N -0.51 -23.03 11.25 -302.47 -3.40 -26.44 15 12 C 0.20 8.19 7.80 137.25 1.07 9.26 15 13 C -0.05 -1.71 5.88 -20.03 -0.12 -1.83 15 14 C -0.07 -1.85 9.69 22.46 0.22 -1.63 15 15 C -0.14 -3.04 9.97 22.33 0.22 -2.82 15 16 C 0.13 2.52 6.71 22.57 0.15 2.67 15 17 O -0.50 -7.16 13.49 -91.68 -1.24 -8.40 15 18 C -0.14 -2.83 9.97 22.33 0.22 -2.61 15 19 C -0.07 -1.86 9.69 22.46 0.22 -1.64 15 20 N -0.41 -16.95 11.85 -59.08 -0.70 -17.65 15 21 O 0.06 2.49 11.29 74.66 0.84 3.34 15 22 H 0.27 14.14 8.31 -92.71 -0.77 13.37 15 23 H 0.06 2.78 8.14 -2.39 -0.02 2.77 15 24 H 0.06 2.99 8.14 -2.39 -0.02 2.97 15 25 H 0.13 3.89 7.87 -2.91 -0.02 3.87 15 26 H 0.16 2.52 8.06 -2.91 -0.02 2.49 15 27 H 0.42 1.65 9.06 -74.06 -0.67 0.98 15 28 H 0.16 2.26 8.06 -2.91 -0.02 2.24 15 29 H 0.13 3.44 7.86 -2.91 -0.02 3.42 15 Total: -1.00 -63.55 272.83 1.86 -61.69 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 0.53 Total: 2.77 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 3.52 Total: -8.97 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -3.82 Total: -94.48 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.39 Total: -5.06 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -63.55 1.86 -61.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236605156.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.529 kcal (2) G-P(sol) polarization free energy of solvation -63.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds