Wall clock time and date at job start Mon Mar 30 2020 03:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86797 * 120.00244 * 2 1 4 4 H 1.48495 * 109.47212 * 89.99586 * 3 2 1 5 5 H 1.48496 * 109.47291 * 209.99916 * 3 2 1 6 6 H 1.48503 * 109.46858 * 329.99579 * 3 2 1 7 7 C 1.40051 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.41238 * 120.00215 * 0.02562 * 7 2 1 10 10 N 1.33664 * 119.85748 * 0.02562 * 9 7 2 11 11 C 1.31365 * 121.53965 * 179.97438 * 10 9 7 12 12 C 1.38868 * 121.09489 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.20173 * 180.02562 * 12 11 10 14 14 N 1.46901 * 109.47165 * 100.93588 * 13 12 11 15 15 C 1.38779 * 119.59885 * 359.97438 * 12 11 10 16 16 C 1.50696 * 120.71414 * 180.02562 * 15 12 11 17 17 F 1.39905 * 109.47127 * 298.99792 * 16 15 12 18 18 F 1.39897 * 109.47682 * 58.99961 * 16 15 12 19 19 C 1.38550 * 118.57024 * 359.72881 * 15 12 11 20 20 F 1.35098 * 120.54883 * 180.28719 * 19 15 12 21 21 H 0.96996 * 119.99787 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.45275 * 180.02562 * 11 10 9 23 23 H 1.08995 * 109.47107 * 220.93925 * 13 12 11 24 24 H 1.08999 * 109.46637 * 340.93238 * 13 12 11 25 25 H 1.00899 * 110.99661 * 174.54136 * 14 13 12 26 26 H 1.00900 * 110.99588 * 298.48714 * 14 13 12 27 27 H 1.09001 * 109.46949 * 179.00320 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4890 2.0464 1.4000 5 1 3.5391 1.4401 -0.7000 6 1 1.4390 2.6526 -0.7002 7 6 2.0077 -1.2129 0.0005 8 1 3.0878 -1.2129 0.0010 9 6 1.3015 -2.4361 0.0005 10 7 -0.0351 -2.4327 -0.0005 11 6 -0.7251 -3.5506 -0.0010 12 6 -0.0899 -4.7854 0.0000 13 6 -0.9013 -6.0554 -0.0012 14 7 -0.9414 -6.6095 -1.3611 15 6 1.2967 -4.8430 0.0011 16 6 2.0120 -6.1694 0.0016 17 9 1.6696 -6.8834 1.1550 18 9 1.6364 -6.9024 -1.1292 19 6 2.0092 -3.6548 -0.0047 20 9 3.3602 -3.6642 -0.0097 21 1 -0.4850 0.8400 -0.0004 22 1 -1.8043 -3.5085 -0.0023 23 1 -0.4438 -6.7795 0.6729 24 1 -1.9159 -5.8385 0.3329 25 1 -1.4036 -7.5063 -1.3726 26 1 -1.3838 -5.9665 -2.0006 27 1 3.0889 -6.0014 -0.0154 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238565285.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:47 Heat of formation + Delta-G solvation = -135.257493 kcal Electronic energy + Delta-G solvation = -18025.107883 eV Core-core repulsion = 14560.039880 eV Total energy + Delta-G solvation = -3465.068003 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.91446 -49.39863 -47.77566 -40.28002 -36.44935 -35.01938 -33.16238 -31.62403 -28.55129 -27.15349 -25.03034 -23.26053 -22.26608 -19.68940 -18.88760 -18.07335 -17.98064 -17.45435 -17.18261 -16.60579 -16.43876 -16.20432 -15.36427 -15.21974 -14.67227 -14.39073 -14.31960 -14.18296 -13.78140 -13.62711 -13.51512 -13.02947 -12.88307 -12.70212 -12.39856 -11.96771 -11.83630 -11.31429 -10.31949 -9.79306 -9.61690 -9.39704 -8.49140 -6.66620 0.49853 0.59163 1.39531 1.48394 1.54426 2.17540 2.63560 2.84969 3.26844 3.52847 3.55334 3.78045 3.93989 4.15585 4.23310 4.30069 4.43910 4.67473 4.85669 5.04748 5.08834 5.25137 5.50678 5.80323 6.07157 6.34424 6.48172 6.68725 6.77477 7.85143 8.26570 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.035477 B = 0.007689 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.044083 B = 3640.643667 C = 4176.803260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.026 3.974 3 Si 0.992 3.008 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.261 1.261 7 C -0.446 4.446 8 H 0.091 0.909 9 C 0.203 3.797 10 N -0.487 5.487 11 C 0.120 3.880 12 C -0.227 4.227 13 C 0.127 3.873 14 N -0.843 5.843 15 C -0.114 4.114 16 C 0.324 3.676 17 F -0.204 7.204 18 F -0.181 7.181 19 C -0.075 4.075 20 F -0.153 7.153 21 H 0.287 0.713 22 H 0.153 0.847 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.348 0.652 26 H 0.341 0.659 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 -5.557 -0.328 5.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.109 0.891 9 C 0.078 3.922 10 N -0.199 5.199 11 C -0.046 4.046 12 C -0.232 4.232 13 C -0.004 4.004 14 N -0.374 5.374 15 C -0.122 4.122 16 C 0.270 3.730 17 F -0.186 7.186 18 F -0.162 7.162 19 C -0.100 4.100 20 F -0.132 7.132 21 H 0.098 0.902 22 H 0.170 0.830 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.162 0.838 26 H 0.153 0.847 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.581 -4.650 -0.282 4.695 hybrid contribution -0.159 -0.180 0.147 0.281 sum -0.740 -4.831 -0.136 4.889 Atomic orbital electron populations 1.70151 1.08840 1.30096 1.26913 1.27001 0.95849 1.04535 0.92433 0.85052 0.78959 0.75106 0.79778 1.18403 1.18073 1.18556 1.20002 0.95171 0.90320 1.42103 0.89119 1.19019 0.89306 0.91612 0.92220 1.68806 1.05877 1.27941 1.17244 1.23031 1.00219 0.87663 0.93721 1.20114 0.91810 0.96669 1.14653 1.20298 0.96756 0.92168 0.91146 1.58639 1.63432 1.07818 1.07523 1.20321 0.95408 0.92548 1.03941 1.20053 0.98788 0.82576 0.71607 1.92915 1.94373 1.80228 1.51057 1.93050 1.93513 1.78540 1.51112 1.18594 0.76761 0.95017 1.19580 1.91254 1.29381 1.97267 1.95305 0.90155 0.82964 0.91303 0.93724 0.83841 0.84688 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.61 11.46 21.84 0.25 -37.36 15 2 C 0.03 1.25 5.50 85.29 0.47 1.72 15 3 Si 0.99 36.38 29.56 68.60 2.03 38.41 15 4 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 5 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 6 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 7 C -0.45 -23.77 8.99 23.45 0.21 -23.56 15 8 H 0.09 4.66 7.42 -2.91 -0.02 4.64 15 9 C 0.20 11.07 6.56 40.26 0.26 11.34 15 10 N -0.49 -25.79 7.86 -188.92 -1.49 -27.27 15 11 C 0.12 5.38 10.82 84.91 0.92 6.30 15 12 C -0.23 -9.42 5.45 -19.58 -0.11 -9.53 15 13 C 0.13 4.16 6.15 85.56 0.53 4.68 15 14 N -0.84 -24.64 7.89 -190.01 -1.50 -26.14 15 15 C -0.11 -5.03 5.40 -19.66 -0.11 -5.14 15 16 C 0.32 12.12 5.01 71.23 0.36 12.48 15 17 F -0.20 -7.44 15.57 44.97 0.70 -6.74 15 18 F -0.18 -6.76 15.14 44.97 0.68 -6.08 15 19 C -0.08 -3.75 7.29 23.00 0.17 -3.59 15 20 F -0.15 -7.27 15.61 44.97 0.70 -6.57 15 21 H 0.29 13.00 8.29 -92.71 -0.77 12.24 15 22 H 0.15 5.84 8.03 -2.91 -0.02 5.82 15 23 H 0.07 2.31 6.18 -2.39 -0.01 2.29 15 24 H 0.04 1.28 8.00 -2.39 -0.02 1.26 15 25 H 0.35 8.08 9.08 -89.69 -0.81 7.27 15 26 H 0.34 9.59 9.04 -89.69 -0.81 8.78 15 27 H 0.12 4.15 7.23 -2.39 -0.02 4.14 15 Total: -1.00 -59.63 248.85 3.71 -55.92 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.37 Total: 21.12 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 2.70 Total: -5.29 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.73 Total: -90.78 kcal Atomic # 9 Polarization: -21.46 SS G_CDS: 2.08 Total: -19.38 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Total: -59.63 3.71 -55.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238565285.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.335 kcal (2) G-P(sol) polarization free energy of solvation -59.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds