Wall clock time and date at job start Mon Mar 30 2020 03:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86800 * 120.00010 * 2 1 4 4 H 1.48501 * 109.46709 * 274.38535 * 3 2 1 5 5 H 1.48497 * 109.47324 * 34.38165 * 3 2 1 6 6 H 1.48493 * 109.47036 * 154.38922 * 3 2 1 7 7 C 1.40034 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99640 * 23.39627 * 7 2 1 9 9 C 1.41521 * 120.00316 * 203.66554 * 7 2 1 10 10 C 1.41121 * 121.01275 * 48.66858 * 9 7 2 11 11 C 1.50701 * 120.53856 * 0.02562 * 10 9 7 12 12 N 1.46902 * 109.46862 * 80.00227 * 11 10 9 13 13 C 1.37617 * 118.92328 * 180.02562 * 10 9 7 14 14 N 1.32086 * 121.05395 * 359.96940 * 13 10 9 15 15 C 1.32176 * 122.28100 * 0.03018 * 14 13 10 16 16 F 1.35098 * 119.53232 * 180.02562 * 15 14 13 17 17 C 1.38099 * 120.93442 * 359.70863 * 15 14 13 18 18 C 1.50704 * 120.57862 * 180.30840 * 17 15 14 19 19 F 1.39902 * 109.46627 * 118.54147 * 18 17 15 20 20 F 1.39897 * 109.47317 * 238.54255 * 18 17 15 21 21 H 0.97003 * 119.99737 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47246 * 200.00202 * 11 10 9 23 23 H 1.08994 * 109.47076 * 320.00518 * 11 10 9 24 24 H 1.00899 * 110.99705 * 56.04695 * 12 11 10 25 25 H 1.00898 * 110.99775 * 179.97438 * 12 11 10 26 26 H 1.08005 * 119.47976 * 180.02562 * 13 10 9 27 27 H 1.08996 * 109.47258 * 358.54814 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3962 2.0999 -1.3960 5 1 1.4883 2.6242 0.7906 6 1 3.5823 1.4151 0.6052 7 6 2.0076 -1.2127 0.0005 8 1 1.5341 -2.1098 -0.3705 9 6 3.3336 -1.2642 0.4925 10 6 3.6701 -0.6904 1.7371 11 6 2.6196 -0.0074 2.5745 12 7 1.8376 -1.0181 3.2990 13 6 4.9730 -0.7648 2.1738 14 7 5.9017 -1.3616 1.4485 15 6 5.6362 -1.9134 0.2772 16 9 6.6291 -2.5100 -0.4182 17 6 4.3571 -1.8945 -0.2429 18 6 4.0620 -2.5323 -1.5761 19 9 3.1347 -3.5656 -1.4036 20 9 3.5339 -1.5722 -2.4457 21 1 -0.4850 0.8401 -0.0004 22 1 3.1018 0.6599 3.2890 23 1 1.9581 0.5692 1.9281 24 1 2.4372 -1.6079 3.8564 25 1 1.1263 -0.5848 3.8686 26 1 5.2404 -0.3291 3.1252 27 1 4.9824 -2.9368 -1.9971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238566989.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:00 Heat of formation + Delta-G solvation = -108.193226 kcal Electronic energy + Delta-G solvation = -18480.301402 eV Core-core repulsion = 15016.406994 eV Total energy + Delta-G solvation = -3463.894408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.38649 -47.88185 -45.94858 -39.01404 -34.92313 -33.51822 -31.95459 -30.05013 -27.02857 -25.02133 -24.17725 -21.35514 -20.42834 -18.38841 -17.15505 -16.50430 -16.27594 -16.04704 -15.45822 -15.14392 -15.01623 -14.95890 -13.83329 -13.50685 -13.18914 -13.00746 -12.80495 -12.35073 -12.20402 -12.15694 -12.07666 -11.61471 -11.46685 -10.96538 -10.75360 -10.17231 -10.00845 -9.44503 -8.62556 -8.40202 -8.03042 -7.88721 -7.11645 -4.77997 1.84754 2.24962 2.90332 3.05203 3.09400 3.77538 4.20010 4.47520 4.70165 4.80792 5.12499 5.39104 5.40131 5.64355 5.78595 5.89617 6.02409 6.15142 6.22128 6.70956 6.77639 6.87379 7.38432 7.56622 7.77262 8.04075 8.13312 8.24980 8.51949 8.71765 9.86583 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.013508 C = 0.010511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.744120 B = 2072.321748 C = 2663.217407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.103 3.897 3 Si 0.878 3.122 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.419 4.419 8 H 0.109 0.891 9 C 0.163 3.837 10 C -0.216 4.216 11 C 0.129 3.871 12 N -0.826 5.826 13 C 0.143 3.857 14 N -0.596 5.596 15 C 0.348 3.652 16 F -0.135 7.135 17 C -0.344 4.344 18 C 0.342 3.658 19 F -0.206 7.206 20 F -0.200 7.200 21 H 0.287 0.713 22 H 0.016 0.984 23 H 0.072 0.928 24 H 0.332 0.668 25 H 0.331 0.669 26 H 0.137 0.863 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.580 1.288 2.221 4.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.120 4.120 3 Si 0.701 3.299 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.157 1.157 7 C -0.447 4.447 8 H 0.126 0.874 9 C 0.154 3.846 10 C -0.221 4.221 11 C -0.001 4.001 12 N -0.354 5.354 13 C -0.007 4.007 14 N -0.316 5.316 15 C 0.195 3.805 16 F -0.114 7.114 17 C -0.351 4.351 18 C 0.288 3.712 19 F -0.187 7.187 20 F -0.181 7.181 21 H 0.098 0.902 22 H 0.034 0.966 23 H 0.090 0.910 24 H 0.144 0.856 25 H 0.143 0.857 26 H 0.155 0.845 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.927 1.076 1.780 4.444 hybrid contribution -0.146 1.115 0.390 1.190 sum 3.781 2.192 2.170 4.880 Atomic orbital electron populations 1.69715 1.08086 1.30408 1.31213 1.25964 0.94421 1.01097 0.90523 0.86843 0.82935 0.80311 0.79765 1.19449 1.19857 1.15730 1.19320 0.93770 0.97204 1.34430 0.87353 1.17254 0.92183 0.86247 0.88889 1.20729 0.94666 1.09961 0.96705 1.20437 0.93134 0.92036 0.94522 1.58481 1.17566 1.24397 1.34992 1.21685 0.88119 0.94002 0.96868 1.66823 1.38053 1.19426 1.07265 1.17599 0.82104 0.92228 0.88590 1.91478 1.62093 1.80816 1.77001 1.21003 0.93365 1.20620 1.00143 1.19612 0.87298 0.77275 0.87007 1.92947 1.70098 1.59526 1.96124 1.92959 1.88871 1.65448 1.70825 0.90199 0.96618 0.90987 0.85585 0.85673 0.84528 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.13 13.92 55.55 0.77 -18.36 15 2 C 0.10 2.51 4.17 -17.34 -0.07 2.44 15 3 Si 0.88 19.00 24.61 -169.99 -4.18 14.82 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 6 H -0.23 -5.12 5.63 56.52 0.32 -4.80 15 7 C -0.42 -10.69 7.61 -37.66 -0.29 -10.98 15 8 H 0.11 3.05 7.14 -52.48 -0.37 2.68 15 9 C 0.16 3.91 4.46 -106.54 -0.47 3.44 15 10 C -0.22 -4.69 3.66 -103.76 -0.38 -5.07 15 11 C 0.13 2.51 5.54 -4.97 -0.03 2.49 15 12 N -0.83 -14.83 9.61 -11.41 -0.11 -14.94 15 13 C 0.14 2.92 10.81 -17.67 -0.19 2.73 15 14 N -0.60 -13.21 10.35 -13.77 -0.14 -13.35 15 15 C 0.35 7.75 8.36 -17.45 -0.15 7.61 15 16 F -0.13 -2.73 16.22 2.25 0.04 -2.70 15 17 C -0.34 -7.93 5.44 -103.66 -0.56 -8.49 15 18 C 0.34 7.26 5.04 36.01 0.18 7.44 15 19 F -0.21 -4.59 16.15 2.25 0.04 -4.56 15 20 F -0.20 -4.50 16.56 2.25 0.04 -4.46 15 21 H 0.29 6.42 8.29 -40.82 -0.34 6.09 15 22 H 0.02 0.27 8.02 -51.93 -0.42 -0.15 15 23 H 0.07 1.52 2.77 -51.93 -0.14 1.38 15 24 H 0.33 5.35 8.98 -39.29 -0.35 4.99 15 25 H 0.33 5.09 9.08 -39.29 -0.36 4.73 15 26 H 0.14 2.32 8.04 -52.48 -0.42 1.90 15 27 H 0.10 1.71 7.15 -51.93 -0.37 1.34 15 LS Contribution 241.82 15.07 3.64 3.64 Total: -1.00 -27.24 241.82 -3.52 -30.76 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -1.65 Total: 7.52 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.96 Total: 1.61 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.52 Total: -46.64 kcal Atomic # 9 Polarization: -11.83 SS G_CDS: 0.11 Total: -11.71 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.18 Total: 14.82 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.24 -3.52 -30.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238566989.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.429 kcal (2) G-P(sol) polarization free energy of solvation -27.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds