Wall clock time and date at job start Mon Mar 30 2020 03:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86800 * 120.00010 * 2 1 4 4 H 1.48501 * 109.46709 * 274.38535 * 3 2 1 5 5 H 1.48497 * 109.47324 * 34.38165 * 3 2 1 6 6 H 1.48493 * 109.47036 * 154.38922 * 3 2 1 7 7 C 1.40034 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99640 * 23.39627 * 7 2 1 9 9 C 1.41521 * 120.00316 * 203.66554 * 7 2 1 10 10 C 1.41121 * 121.01275 * 48.66858 * 9 7 2 11 11 C 1.50701 * 120.53856 * 0.02562 * 10 9 7 12 12 N 1.46902 * 109.46862 * 80.00227 * 11 10 9 13 13 C 1.37617 * 118.92328 * 180.02562 * 10 9 7 14 14 N 1.32086 * 121.05395 * 359.96940 * 13 10 9 15 15 C 1.32176 * 122.28100 * 0.03018 * 14 13 10 16 16 F 1.35098 * 119.53232 * 180.02562 * 15 14 13 17 17 C 1.38099 * 120.93442 * 359.70863 * 15 14 13 18 18 C 1.50704 * 120.57862 * 180.30840 * 17 15 14 19 19 F 1.39902 * 109.46627 * 118.54147 * 18 17 15 20 20 F 1.39897 * 109.47317 * 238.54255 * 18 17 15 21 21 H 0.97003 * 119.99737 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47246 * 200.00202 * 11 10 9 23 23 H 1.08994 * 109.47076 * 320.00518 * 11 10 9 24 24 H 1.00899 * 110.99705 * 56.04695 * 12 11 10 25 25 H 1.00898 * 110.99775 * 179.97438 * 12 11 10 26 26 H 1.08005 * 119.47976 * 180.02562 * 13 10 9 27 27 H 1.08996 * 109.47258 * 358.54814 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3962 2.0999 -1.3960 5 1 1.4883 2.6242 0.7906 6 1 3.5823 1.4151 0.6052 7 6 2.0076 -1.2127 0.0005 8 1 1.5341 -2.1098 -0.3705 9 6 3.3336 -1.2642 0.4925 10 6 3.6701 -0.6904 1.7371 11 6 2.6196 -0.0074 2.5745 12 7 1.8376 -1.0181 3.2990 13 6 4.9730 -0.7648 2.1738 14 7 5.9017 -1.3616 1.4485 15 6 5.6362 -1.9134 0.2772 16 9 6.6291 -2.5100 -0.4182 17 6 4.3571 -1.8945 -0.2429 18 6 4.0620 -2.5323 -1.5761 19 9 3.1347 -3.5656 -1.4036 20 9 3.5339 -1.5722 -2.4457 21 1 -0.4850 0.8401 -0.0004 22 1 3.1018 0.6599 3.2890 23 1 1.9581 0.5692 1.9281 24 1 2.4372 -1.6079 3.8564 25 1 1.1263 -0.5848 3.8686 26 1 5.2404 -0.3291 3.1252 27 1 4.9824 -2.9368 -1.9971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238566989.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:00 Heat of formation + Delta-G solvation = -128.353009 kcal Electronic energy + Delta-G solvation = -18481.175596 eV Core-core repulsion = 15016.406994 eV Total energy + Delta-G solvation = -3464.768602 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.07156 -49.61343 -47.70669 -40.73086 -36.58632 -35.16431 -33.72719 -31.68814 -28.78483 -26.71365 -25.81502 -23.09443 -22.08472 -20.16670 -18.86717 -18.22033 -18.02244 -17.75119 -17.11353 -16.84281 -16.69993 -16.55383 -15.32153 -15.16035 -14.88084 -14.66927 -14.55892 -14.11822 -13.89755 -13.86944 -13.69445 -13.34089 -13.17774 -12.76900 -12.38202 -11.86408 -11.70122 -11.23680 -10.36475 -10.18711 -9.65316 -9.32628 -8.91197 -6.65051 0.13194 0.47396 1.20608 1.34624 1.37225 2.03778 2.46061 2.77591 3.04582 3.07158 3.45342 3.74302 4.00849 4.04224 4.25040 4.30287 4.32936 4.48578 4.70152 5.01381 5.10825 5.13299 5.64497 5.85097 6.19793 6.37952 6.47329 6.65757 6.81192 6.99718 8.12752 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.013508 C = 0.010511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.744120 B = 2072.321748 C = 2663.217407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.080 3.920 3 Si 0.923 3.077 4 H -0.279 1.279 5 H -0.249 1.249 6 H -0.235 1.235 7 C -0.447 4.447 8 H 0.066 0.934 9 C 0.153 3.847 10 C -0.221 4.221 11 C 0.128 3.872 12 N -0.841 5.841 13 C 0.148 3.852 14 N -0.597 5.597 15 C 0.344 3.656 16 F -0.123 7.123 17 C -0.359 4.359 18 C 0.336 3.664 19 F -0.216 7.216 20 F -0.210 7.210 21 H 0.296 0.704 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.343 0.657 25 H 0.346 0.654 26 H 0.181 0.819 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.124 2.293 3.552 6.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.173 1.173 6 H -0.158 1.158 7 C -0.476 4.476 8 H 0.084 0.916 9 C 0.144 3.856 10 C -0.225 4.225 11 C -0.003 4.003 12 N -0.372 5.372 13 C -0.002 4.002 14 N -0.317 5.317 15 C 0.190 3.810 16 F -0.103 7.103 17 C -0.366 4.366 18 C 0.282 3.718 19 F -0.197 7.197 20 F -0.191 7.191 21 H 0.107 0.893 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.156 0.844 25 H 0.160 0.840 26 H 0.197 0.803 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.463 2.074 3.127 6.627 hybrid contribution -0.507 0.700 0.015 0.865 sum 4.955 2.773 3.142 6.490 Atomic orbital electron populations 1.69725 1.09071 1.31550 1.32914 1.26439 0.94831 1.02874 0.89803 0.86188 0.82114 0.77976 0.79344 1.20587 1.17251 1.15803 1.19025 0.94976 0.96492 1.37092 0.91639 1.17499 0.91757 0.86597 0.89725 1.21047 0.96029 1.09417 0.96022 1.20419 0.92558 0.92437 0.94845 1.58359 1.18272 1.24767 1.35848 1.22322 0.87226 0.92759 0.97881 1.66949 1.38629 1.19009 1.07078 1.17638 0.82094 0.92382 0.88867 1.91499 1.61440 1.80549 1.76771 1.21307 0.93785 1.20496 1.00984 1.20025 0.88206 0.76907 0.86652 1.92922 1.70772 1.59871 1.96181 1.92931 1.89184 1.65997 1.71025 0.89327 0.93065 0.92712 0.84386 0.84028 0.80252 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.75 13.92 21.84 0.30 -40.45 15 2 C 0.08 3.94 4.17 85.29 0.36 4.30 15 3 Si 0.92 38.28 24.61 68.60 1.69 39.97 15 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.25 -9.21 7.11 99.48 0.71 -8.50 15 6 H -0.24 -9.63 5.63 99.48 0.56 -9.07 15 7 C -0.45 -23.27 7.61 23.52 0.18 -23.09 15 8 H 0.07 3.90 7.14 -2.91 -0.02 3.88 15 9 C 0.15 7.24 4.46 -21.11 -0.09 7.15 15 10 C -0.22 -9.06 3.66 -19.30 -0.07 -9.13 15 11 C 0.13 4.63 5.54 85.56 0.47 5.10 15 12 N -0.84 -28.52 9.61 -190.00 -1.83 -30.35 15 13 C 0.15 5.50 10.81 84.51 0.91 6.41 15 14 N -0.60 -24.57 10.35 -197.46 -2.04 -26.62 15 15 C 0.34 14.55 8.36 84.61 0.71 15.26 15 16 F -0.12 -4.71 16.22 44.97 0.73 -3.98 15 17 C -0.36 -16.17 5.44 -19.24 -0.10 -16.28 15 18 C 0.34 14.10 5.04 71.24 0.36 14.45 15 19 F -0.22 -9.80 16.15 44.97 0.73 -9.07 15 20 F -0.21 -9.50 16.56 44.97 0.74 -8.76 15 21 H 0.30 13.34 8.29 -92.71 -0.77 12.57 15 22 H 0.05 1.49 8.02 -2.38 -0.02 1.47 15 23 H 0.05 2.20 2.77 -2.39 -0.01 2.20 15 24 H 0.34 10.20 8.98 -89.69 -0.81 9.40 15 25 H 0.35 9.90 9.08 -89.70 -0.81 9.09 15 26 H 0.18 5.10 8.04 -2.91 -0.02 5.08 15 27 H 0.14 4.58 7.15 -2.39 -0.02 4.56 15 Total: -1.00 -58.19 241.82 2.54 -55.65 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.50 Total: 19.44 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 2.72 Total: 4.17 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -3.57 Total: -97.42 kcal Atomic # 9 Polarization: -24.01 SS G_CDS: 2.20 Total: -21.81 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.69 Total: 39.97 kcal Total: -58.19 2.54 -55.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238566989.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.702 kcal (2) G-P(sol) polarization free energy of solvation -58.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds