Wall clock time and date at job start Mon Mar 30 2020 03:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30842 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48494 * 109.47176 * 239.99762 * 3 2 1 5 5 H 1.48497 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46859 * 119.99807 * 3 2 1 7 7 C 1.39936 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00345 * 199.60829 * 7 2 1 9 9 C 1.41330 * 119.99755 * 19.60941 * 7 2 1 10 10 C 1.41406 * 120.68697 * 35.74344 * 9 7 2 11 11 F 1.35103 * 120.93611 * 0.02562 * 10 9 7 12 12 C 1.38397 * 118.13139 * 180.24189 * 10 9 7 13 13 C 1.38418 * 119.38916 * 359.74642 * 12 10 9 14 14 C 1.50696 * 119.31968 * 179.97438 * 13 12 10 15 15 F 1.39901 * 109.47740 * 210.02333 * 14 13 12 16 16 F 1.39904 * 109.47106 * 330.02437 * 14 13 12 17 17 N 1.32129 * 121.36506 * 0.02562 * 13 12 10 18 18 C 1.31499 * 122.05978 * 359.97438 * 17 13 12 19 19 C 1.50705 * 119.78675 * 179.97438 * 18 17 13 20 20 N 1.46894 * 109.47511 * 89.99833 * 19 18 17 21 21 H 0.97006 * 120.00426 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.30758 * 179.72321 * 12 10 9 23 23 H 1.09006 * 109.47367 * 90.02087 * 14 13 12 24 24 H 1.09000 * 109.46979 * 329.99471 * 19 18 17 25 25 H 1.09005 * 109.47083 * 210.00181 * 19 18 17 26 26 H 1.00902 * 110.99940 * 59.99994 * 20 19 18 27 27 H 1.00893 * 111.00530 * 183.95684 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0962 1.6965 -1.2124 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6965 1.2126 7 6 2.0081 -1.2119 0.0005 8 1 3.0412 -1.2389 0.3144 9 6 1.3630 -2.4005 -0.4097 10 6 0.4100 -2.3808 -1.4542 11 9 0.0940 -1.2283 -2.0845 12 6 -0.1933 -3.5745 -1.8098 13 6 0.1551 -4.7366 -1.1432 14 6 -0.5032 -6.0354 -1.5312 15 9 -0.5749 -6.8741 -0.4138 16 9 -1.7941 -5.7803 -2.0064 17 7 1.0521 -4.7304 -0.1732 18 6 1.6591 -3.6284 0.2093 19 6 2.6739 -3.6802 1.3222 20 7 4.0073 -3.9286 0.7581 21 1 -0.4851 0.8401 -0.0004 22 1 -0.9293 -3.5992 -2.5997 23 1 0.0822 -6.5204 -2.3125 24 1 2.4158 -4.4837 2.0121 25 1 2.6765 -2.7299 1.8561 26 1 4.2697 -3.1969 0.1148 27 1 4.6955 -4.0319 1.4885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238580716.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:24 Heat of formation + Delta-G solvation = -125.562018 kcal Electronic energy + Delta-G solvation = -17879.803687 eV Core-core repulsion = 14415.156111 eV Total energy + Delta-G solvation = -3464.647576 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.29102 -47.30095 -46.30826 -38.67829 -34.53140 -33.78698 -30.81641 -30.33930 -27.28926 -25.24800 -23.73019 -21.24732 -20.50172 -17.75953 -16.93806 -16.80190 -16.68353 -15.84511 -15.30604 -15.05353 -14.37666 -14.18166 -14.03290 -13.67871 -13.20875 -12.95092 -12.64259 -12.59924 -12.31871 -11.96933 -11.86800 -11.48827 -11.36067 -11.16005 -10.94314 -10.57857 -9.83906 -9.55831 -8.44121 -8.22398 -8.06184 -7.77747 -7.15023 -4.81950 2.14695 2.51151 2.89364 2.92353 2.96545 3.69265 4.23346 4.39770 4.84065 4.93634 5.22724 5.42371 5.58537 5.73853 5.81499 6.12492 6.27853 6.38391 6.51985 6.76545 6.90145 7.02463 7.31309 7.53014 7.69506 7.96870 8.02877 8.30447 8.37441 9.23147 9.82427 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.008711 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.488286 B = 3213.643197 C = 4028.848703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.441 4.441 8 H 0.090 0.910 9 C 0.057 3.943 10 C 0.061 3.939 11 F -0.132 7.132 12 C -0.146 4.146 13 C -0.073 4.073 14 C 0.344 3.656 15 F -0.200 7.200 16 F -0.210 7.210 17 N -0.425 5.425 18 C 0.046 3.954 19 C 0.137 3.863 20 N -0.844 5.844 21 H 0.291 0.709 22 H 0.119 0.881 23 H 0.108 0.892 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.339 0.661 27 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 -1.766 -1.003 3.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.469 4.469 8 H 0.108 0.892 9 C 0.051 3.949 10 C 0.035 3.965 11 F -0.110 7.110 12 C -0.168 4.168 13 C -0.210 4.210 14 C 0.290 3.710 15 F -0.182 7.182 16 F -0.192 7.192 17 N -0.134 5.134 18 C -0.099 4.099 19 C 0.007 3.993 20 N -0.374 5.374 21 H 0.102 0.898 22 H 0.137 0.863 23 H 0.125 0.875 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.152 0.848 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.231 -3.039 -0.901 3.876 hybrid contribution -0.013 2.715 -0.112 2.717 sum 2.218 -0.324 -1.013 2.460 Atomic orbital electron populations 1.69738 1.08007 1.30933 1.29488 1.25962 0.94796 1.01835 0.92400 0.86189 0.80129 0.79451 0.80172 1.18428 1.19979 1.18736 1.19387 0.98894 0.90749 1.37910 0.89201 1.18407 0.91622 0.94576 0.90306 1.17812 1.02406 0.80759 0.95569 1.91367 1.91729 1.47787 1.80164 1.21178 1.01040 0.92363 1.02248 1.20157 1.04841 0.93089 1.02898 1.19819 0.79297 0.87539 0.84359 1.92946 1.96465 1.72870 1.55880 1.92933 1.42543 1.95039 1.88640 1.66326 1.05004 1.31214 1.10823 1.20694 1.01709 0.87582 0.99941 1.20162 0.86389 0.99560 0.93198 1.58746 1.03511 1.53309 1.21804 0.89767 0.86322 0.87510 0.91202 0.93607 0.84831 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.87 11.05 55.55 0.61 -18.26 15 2 C 0.07 1.72 4.58 -17.34 -0.08 1.64 15 3 Si 0.92 17.41 29.60 -169.99 -5.03 12.38 15 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 5 H -0.28 -5.15 7.11 56.52 0.40 -4.75 15 6 H -0.26 -4.82 7.11 56.52 0.40 -4.41 15 7 C -0.44 -10.52 7.78 -37.77 -0.29 -10.82 15 8 H 0.09 1.96 7.05 -52.48 -0.37 1.59 15 9 C 0.06 1.42 5.42 -106.60 -0.58 0.84 15 10 C 0.06 1.54 6.76 -38.32 -0.26 1.28 15 11 F -0.13 -3.39 14.37 2.25 0.03 -3.36 15 12 C -0.15 -3.38 9.40 -39.46 -0.37 -3.76 15 13 C -0.07 -1.65 6.59 -82.40 -0.54 -2.19 15 14 C 0.34 6.50 5.71 36.00 0.21 6.70 15 15 F -0.20 -4.04 17.05 2.25 0.04 -4.00 15 16 F -0.21 -3.95 16.43 2.25 0.04 -3.92 15 17 N -0.42 -10.14 9.84 -5.13 -0.05 -10.19 15 18 C 0.05 1.09 6.40 -81.82 -0.52 0.57 15 19 C 0.14 2.72 6.52 -4.98 -0.03 2.69 15 20 N -0.84 -14.54 9.59 -11.41 -0.11 -14.65 15 21 H 0.29 6.62 8.30 -40.82 -0.34 6.28 15 22 H 0.12 2.47 7.57 -52.49 -0.40 2.08 15 23 H 0.11 1.63 8.14 -51.93 -0.42 1.20 15 24 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 25 H 0.05 0.90 6.93 -51.93 -0.36 0.54 15 26 H 0.34 5.81 8.73 -39.29 -0.34 5.46 15 27 H 0.33 4.59 9.08 -39.30 -0.36 4.23 15 LS Contribution 252.35 15.07 3.80 3.80 Total: -1.00 -27.67 252.35 -4.95 -32.62 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -1.81 Total: 8.61 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.47 Total: -3.04 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.45 Total: -43.10 kcal Atomic # 9 Polarization: -11.38 SS G_CDS: 0.11 Total: -11.27 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.67 -4.95 -32.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238580716.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.943 kcal (2) G-P(sol) polarization free energy of solvation -27.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds