Wall clock time and date at job start Mon Mar 30 2020 03:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30842 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48494 * 109.47176 * 239.99762 * 3 2 1 5 5 H 1.48497 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46859 * 119.99807 * 3 2 1 7 7 C 1.39936 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00345 * 199.60829 * 7 2 1 9 9 C 1.41330 * 119.99755 * 19.60941 * 7 2 1 10 10 C 1.41406 * 120.68697 * 35.74344 * 9 7 2 11 11 F 1.35103 * 120.93611 * 0.02562 * 10 9 7 12 12 C 1.38397 * 118.13139 * 180.24189 * 10 9 7 13 13 C 1.38418 * 119.38916 * 359.74642 * 12 10 9 14 14 C 1.50696 * 119.31968 * 179.97438 * 13 12 10 15 15 F 1.39901 * 109.47740 * 210.02333 * 14 13 12 16 16 F 1.39904 * 109.47106 * 330.02437 * 14 13 12 17 17 N 1.32129 * 121.36506 * 0.02562 * 13 12 10 18 18 C 1.31499 * 122.05978 * 359.97438 * 17 13 12 19 19 C 1.50705 * 119.78675 * 179.97438 * 18 17 13 20 20 N 1.46894 * 109.47511 * 89.99833 * 19 18 17 21 21 H 0.97006 * 120.00426 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.30758 * 179.72321 * 12 10 9 23 23 H 1.09006 * 109.47367 * 90.02087 * 14 13 12 24 24 H 1.09000 * 109.46979 * 329.99471 * 19 18 17 25 25 H 1.09005 * 109.47083 * 210.00181 * 19 18 17 26 26 H 1.00902 * 110.99940 * 59.99994 * 20 19 18 27 27 H 1.00893 * 111.00530 * 183.95684 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0962 1.6965 -1.2124 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6965 1.2126 7 6 2.0081 -1.2119 0.0005 8 1 3.0412 -1.2389 0.3144 9 6 1.3630 -2.4005 -0.4097 10 6 0.4100 -2.3808 -1.4542 11 9 0.0940 -1.2283 -2.0845 12 6 -0.1933 -3.5745 -1.8098 13 6 0.1551 -4.7366 -1.1432 14 6 -0.5032 -6.0354 -1.5312 15 9 -0.5749 -6.8741 -0.4138 16 9 -1.7941 -5.7803 -2.0064 17 7 1.0521 -4.7304 -0.1732 18 6 1.6591 -3.6284 0.2093 19 6 2.6739 -3.6802 1.3222 20 7 4.0073 -3.9286 0.7581 21 1 -0.4851 0.8401 -0.0004 22 1 -0.9293 -3.5992 -2.5997 23 1 0.0822 -6.5204 -2.3125 24 1 2.4158 -4.4837 2.0121 25 1 2.6765 -2.7299 1.8561 26 1 4.2697 -3.1969 0.1148 27 1 4.6955 -4.0319 1.4885 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238580716.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:24 Heat of formation + Delta-G solvation = -144.297489 kcal Electronic energy + Delta-G solvation = -17880.616118 eV Core-core repulsion = 14415.156111 eV Total energy + Delta-G solvation = -3465.460007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.81325 -49.22521 -47.83840 -40.45498 -36.23426 -35.41056 -32.60008 -32.04546 -28.99752 -26.86572 -25.43136 -23.01763 -22.21274 -19.55621 -18.61923 -18.34461 -18.27995 -17.47543 -16.99708 -16.66215 -16.12973 -16.00020 -15.72173 -15.27361 -14.74578 -14.61126 -14.25886 -14.18889 -13.98771 -13.72893 -13.54720 -13.17289 -12.92888 -12.76640 -12.51862 -12.10104 -11.54783 -11.27588 -10.25028 -9.98951 -9.74596 -9.40812 -8.89363 -6.64347 0.36438 0.66079 1.35672 1.44852 1.49391 2.11285 2.50747 2.86202 3.21028 3.31695 3.53700 3.83540 4.04979 4.17889 4.19933 4.40793 4.62514 4.74140 4.80429 5.00648 5.16176 5.23642 5.55453 5.72220 6.14649 6.30198 6.50751 6.56412 6.77885 7.42182 8.10515 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.008711 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.488286 B = 3213.643197 C = 4028.848703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.458 4.458 8 H 0.105 0.895 9 C 0.033 3.967 10 C 0.025 3.975 11 F -0.142 7.142 12 C -0.149 4.149 13 C -0.082 4.082 14 C 0.347 3.653 15 F -0.208 7.208 16 F -0.210 7.210 17 N -0.440 5.440 18 C 0.038 3.962 19 C 0.144 3.856 20 N -0.842 5.842 21 H 0.295 0.705 22 H 0.136 0.864 23 H 0.154 0.846 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.341 0.659 27 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -1.845 -0.933 4.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.485 4.485 8 H 0.123 0.877 9 C 0.027 3.973 10 C -0.001 4.001 11 F -0.121 7.121 12 C -0.170 4.170 13 C -0.219 4.219 14 C 0.293 3.707 15 F -0.189 7.189 16 F -0.191 7.191 17 N -0.149 5.149 18 C -0.108 4.108 19 C 0.014 3.986 20 N -0.374 5.374 21 H 0.106 0.894 22 H 0.154 0.846 23 H 0.171 0.829 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.154 0.846 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.277 -3.146 -0.821 4.616 hybrid contribution -0.360 2.659 -0.127 2.686 sum 2.917 -0.487 -0.948 3.106 Atomic orbital electron populations 1.69804 1.09679 1.31998 1.30770 1.26876 0.95341 1.05123 0.91270 0.85146 0.78753 0.74912 0.80544 1.18361 1.19754 1.17148 1.19720 0.99576 0.91030 1.38222 0.87744 1.18752 0.92151 0.95694 0.90738 1.18210 1.04033 0.81170 0.96673 1.91321 1.91959 1.48425 1.80399 1.21402 1.01022 0.91984 1.02610 1.20822 1.04325 0.94615 1.02108 1.20101 0.79477 0.86021 0.85057 1.92932 1.96506 1.72776 1.56683 1.92935 1.42664 1.95017 1.88497 1.66458 1.05672 1.31340 1.11444 1.21278 1.02024 0.87191 1.00287 1.20074 0.86885 0.99670 0.92012 1.58636 1.02961 1.53227 1.22573 0.89385 0.84608 0.82893 0.90854 0.93650 0.84646 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.16 11.05 21.83 0.24 -39.92 15 2 C 0.03 1.56 4.58 85.25 0.39 1.95 15 3 Si 0.99 34.96 29.60 68.60 2.03 36.99 15 4 H -0.26 -9.09 7.11 99.48 0.71 -8.39 15 5 H -0.27 -9.47 7.11 99.48 0.71 -8.76 15 6 H -0.25 -8.13 7.11 99.48 0.71 -7.42 15 7 C -0.46 -21.73 7.78 23.44 0.18 -21.55 15 8 H 0.10 4.47 7.05 -2.91 -0.02 4.45 15 9 C 0.03 1.64 5.42 -21.15 -0.11 1.52 15 10 C 0.03 1.30 6.76 23.09 0.16 1.45 15 11 F -0.14 -7.47 14.37 44.97 0.65 -6.82 15 12 C -0.15 -6.84 9.40 22.35 0.21 -6.63 15 13 C -0.08 -3.63 6.59 42.56 0.28 -3.35 15 14 C 0.35 12.36 5.71 71.23 0.41 12.76 15 15 F -0.21 -7.98 17.05 44.97 0.77 -7.22 15 16 F -0.21 -7.48 16.43 44.97 0.74 -6.74 15 17 N -0.44 -20.66 9.84 -170.13 -1.67 -22.34 15 18 C 0.04 1.78 6.40 43.20 0.28 2.06 15 19 C 0.14 5.57 6.52 85.56 0.56 6.13 15 20 N -0.84 -27.52 9.59 -190.01 -1.82 -29.34 15 21 H 0.30 13.59 8.30 -92.70 -0.77 12.82 15 22 H 0.14 5.59 7.57 -2.91 -0.02 5.56 15 23 H 0.15 4.12 8.14 -2.38 -0.02 4.10 15 24 H 0.07 2.75 8.14 -2.39 -0.02 2.73 15 25 H 0.05 1.74 6.93 -2.38 -0.02 1.73 15 26 H 0.34 11.13 8.73 -89.69 -0.78 10.35 15 27 H 0.35 8.94 9.08 -89.70 -0.81 8.13 15 Total: -1.00 -58.68 252.35 2.93 -55.75 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.34 Total: 25.29 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 2.35 Total: -5.65 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -3.25 Total: -91.60 kcal Atomic # 9 Polarization: -22.93 SS G_CDS: 2.15 Total: -20.78 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Total: -58.68 2.93 -55.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238580716.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.552 kcal (2) G-P(sol) polarization free energy of solvation -58.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds