Wall clock time and date at job start Mon Mar 30 2020 03:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86800 * 119.99668 * 2 1 4 4 H 1.48501 * 109.47290 * 274.98528 * 3 2 1 5 5 H 1.48499 * 109.46996 * 34.98462 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98189 * 3 2 1 7 7 C 1.40019 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99505 * 186.19773 * 7 2 1 9 9 C 1.41299 * 120.00175 * 6.20005 * 7 2 1 10 10 N 1.33663 * 119.79371 * 353.20266 * 9 7 2 11 11 C 1.31344 * 121.53542 * 179.74819 * 10 9 7 12 12 C 1.50701 * 119.51838 * 180.26904 * 11 10 9 13 13 N 1.46896 * 109.47090 * 270.25814 * 12 11 10 14 14 C 1.39142 * 120.96105 * 0.53407 * 11 10 9 15 15 F 1.35095 * 120.25404 * 179.71433 * 14 11 10 16 16 C 1.39213 * 119.49027 * 359.73539 * 14 11 10 17 17 C 1.38051 * 118.57279 * 0.02562 * 16 14 11 18 18 C 1.50707 * 120.48550 * 180.02562 * 17 16 14 19 19 F 1.39901 * 109.47219 * 119.97205 * 18 17 16 20 20 F 1.39897 * 109.47013 * 239.97294 * 18 17 16 21 21 H 0.96992 * 120.00284 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47218 * 30.26241 * 12 11 10 23 23 H 1.09003 * 109.46917 * 150.26058 * 12 11 10 24 24 H 1.00899 * 110.99930 * 56.05177 * 13 12 11 25 25 H 1.00903 * 111.00006 * 180.02562 * 13 12 11 26 26 H 1.07998 * 120.71190 * 179.97438 * 16 14 11 27 27 H 1.08996 * 109.46952 * 359.97364 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3837 2.1074 -1.3948 5 1 1.4956 2.6199 0.8027 6 1 3.5878 1.4122 0.5921 7 6 2.0077 -1.2126 0.0005 8 1 3.0830 -1.2152 0.1015 9 6 1.3075 -2.4328 -0.1311 10 7 -0.0291 -2.4361 -0.1189 11 6 -0.7144 -3.5497 -0.2435 12 6 -2.2206 -3.5000 -0.2297 13 7 -2.7023 -3.6362 1.1513 14 6 -0.0701 -4.7750 -0.3826 15 9 -0.7891 -5.9122 -0.5040 16 6 1.3213 -4.8201 -0.3953 17 6 2.0214 -3.6372 -0.2677 18 6 3.5285 -3.6360 -0.2765 19 9 3.9880 -2.8543 -1.3419 20 9 4.0013 -3.1059 0.9288 21 1 -0.4850 0.8400 -0.0004 22 1 -2.5565 -2.5476 -0.6395 23 1 -2.6165 -4.3157 -0.8348 24 1 -2.2979 -2.9291 1.7467 25 1 -3.7103 -3.6064 1.1872 26 1 1.8417 -5.7604 -0.5017 27 1 3.8919 -4.6571 -0.3918 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238584115.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:39 Heat of formation + Delta-G solvation = -122.109776 kcal Electronic energy + Delta-G solvation = -17984.737911 eV Core-core repulsion = 14520.240036 eV Total energy + Delta-G solvation = -3464.497875 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.03625 -47.50041 -45.99321 -38.47969 -34.51379 -33.58908 -31.32201 -29.94928 -26.43432 -25.96213 -23.03139 -21.88989 -20.22465 -17.92188 -16.81512 -16.60002 -16.25737 -15.65736 -15.37221 -14.98131 -14.59374 -14.30057 -13.95926 -13.61964 -12.95614 -12.74212 -12.55602 -12.40773 -11.94221 -11.89578 -11.76192 -11.27793 -11.22418 -10.93629 -10.86341 -10.38751 -10.03704 -9.48507 -8.65370 -8.22086 -7.95148 -7.68409 -6.73679 -4.78118 2.22848 2.54895 2.98576 3.02957 3.04766 3.79833 4.37658 4.66715 5.06448 5.17249 5.42289 5.50416 5.56279 5.74451 5.90021 6.03310 6.09200 6.23499 6.55597 6.73509 6.88972 7.06378 7.23354 7.57946 7.72879 7.93707 8.00560 8.31180 8.58368 9.66979 9.99690 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.011243 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.248963 B = 2489.911931 C = 3686.143729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.065 3.935 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.398 4.398 8 H 0.097 0.903 9 C 0.266 3.734 10 N -0.453 5.453 11 C 0.155 3.845 12 C 0.119 3.881 13 N -0.841 5.841 14 C -0.103 4.103 15 F -0.161 7.161 16 C -0.043 4.043 17 C -0.323 4.323 18 C 0.340 3.660 19 F -0.207 7.207 20 F -0.208 7.208 21 H 0.278 0.722 22 H 0.044 0.956 23 H 0.074 0.926 24 H 0.347 0.653 25 H 0.334 0.666 26 H 0.114 0.886 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 -2.027 -0.358 2.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.162 4.162 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.427 4.427 8 H 0.115 0.885 9 C 0.144 3.856 10 N -0.165 5.165 11 C 0.002 3.998 12 C -0.012 4.012 13 N -0.371 5.371 14 C -0.128 4.128 15 F -0.141 7.141 16 C -0.068 4.068 17 C -0.329 4.329 18 C 0.286 3.714 19 F -0.188 7.188 20 F -0.189 7.189 21 H 0.089 0.911 22 H 0.062 0.938 23 H 0.092 0.908 24 H 0.159 0.841 25 H 0.146 0.854 26 H 0.132 0.868 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.164 -1.743 -0.275 1.772 hybrid contribution 0.357 0.681 -0.288 0.821 sum 0.521 -1.062 -0.563 1.310 Atomic orbital electron populations 1.70105 1.07431 1.28571 1.26357 1.26184 0.95017 1.01717 0.93266 0.86181 0.80787 0.79920 0.79427 1.19091 1.19834 1.17992 1.19950 0.95585 0.89210 1.37967 0.88540 1.18214 0.87647 0.91147 0.88630 1.68683 1.07253 1.24148 1.16431 1.21254 0.95765 0.88234 0.94507 1.20417 0.90367 1.00055 0.90312 1.58680 1.11488 1.57543 1.09380 1.17927 0.89126 0.82619 1.23101 1.91289 1.78083 1.49325 1.95358 1.20617 0.92390 0.96995 0.96847 1.20646 0.93465 0.95410 1.23386 1.19770 0.90216 0.90176 0.71242 1.92946 1.90194 1.78473 1.57224 1.92939 1.89811 1.88990 1.47177 0.91126 0.93797 0.90805 0.84056 0.85438 0.86762 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.52 11.49 55.55 0.64 -16.89 15 2 C 0.07 1.59 5.49 -17.34 -0.10 1.50 15 3 Si 0.91 18.12 29.56 -169.99 -5.03 13.09 15 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 6 H -0.26 -5.09 7.11 56.52 0.40 -4.68 15 7 C -0.40 -10.30 8.16 -37.75 -0.31 -10.61 15 8 H 0.10 2.45 5.54 -52.49 -0.29 2.16 15 9 C 0.27 6.98 6.53 -84.99 -0.56 6.42 15 10 N -0.45 -11.79 7.79 -7.30 -0.06 -11.84 15 11 C 0.15 3.66 6.31 -82.46 -0.52 3.14 15 12 C 0.12 2.37 6.89 -4.98 -0.03 2.33 15 13 N -0.84 -14.94 9.61 -11.41 -0.11 -15.05 15 14 C -0.10 -2.39 7.30 -38.88 -0.28 -2.67 15 15 F -0.16 -3.56 16.48 2.25 0.04 -3.52 15 16 C -0.04 -0.95 9.77 -39.29 -0.38 -1.33 15 17 C -0.32 -7.55 5.43 -103.77 -0.56 -8.12 15 18 C 0.34 6.91 4.94 36.01 0.18 7.08 15 19 F -0.21 -4.43 16.16 2.25 0.04 -4.39 15 20 F -0.21 -4.46 15.93 2.25 0.04 -4.42 15 21 H 0.28 6.21 8.29 -40.82 -0.34 5.87 15 22 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.07 1.37 7.62 -51.93 -0.40 0.98 15 24 H 0.35 6.44 8.99 -39.29 -0.35 6.09 15 25 H 0.33 4.75 9.08 -39.29 -0.36 4.39 15 26 H 0.11 2.09 8.00 -52.49 -0.42 1.67 15 27 H 0.09 1.47 7.93 -51.93 -0.41 1.06 15 LS Contribution 252.76 15.07 3.81 3.81 Total: -1.00 -28.16 252.76 -4.99 -33.15 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -1.78 Total: 8.33 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.57 Total: -2.26 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.47 Total: -43.79 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 0.11 Total: -12.34 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.16 -4.99 -33.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238584115.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.960 kcal (2) G-P(sol) polarization free energy of solvation -28.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds