Wall clock time and date at job start Mon Mar 30 2020 03:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86800 * 119.99668 * 2 1 4 4 H 1.48501 * 109.47290 * 274.98528 * 3 2 1 5 5 H 1.48499 * 109.46996 * 34.98462 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98189 * 3 2 1 7 7 C 1.40019 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99505 * 186.19773 * 7 2 1 9 9 C 1.41299 * 120.00175 * 6.20005 * 7 2 1 10 10 N 1.33663 * 119.79371 * 353.20266 * 9 7 2 11 11 C 1.31344 * 121.53542 * 179.74819 * 10 9 7 12 12 C 1.50701 * 119.51838 * 180.26904 * 11 10 9 13 13 N 1.46896 * 109.47090 * 270.25814 * 12 11 10 14 14 C 1.39142 * 120.96105 * 0.53407 * 11 10 9 15 15 F 1.35095 * 120.25404 * 179.71433 * 14 11 10 16 16 C 1.39213 * 119.49027 * 359.73539 * 14 11 10 17 17 C 1.38051 * 118.57279 * 0.02562 * 16 14 11 18 18 C 1.50707 * 120.48550 * 180.02562 * 17 16 14 19 19 F 1.39901 * 109.47219 * 119.97205 * 18 17 16 20 20 F 1.39897 * 109.47013 * 239.97294 * 18 17 16 21 21 H 0.96992 * 120.00284 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47218 * 30.26241 * 12 11 10 23 23 H 1.09003 * 109.46917 * 150.26058 * 12 11 10 24 24 H 1.00899 * 110.99930 * 56.05177 * 13 12 11 25 25 H 1.00903 * 111.00006 * 180.02562 * 13 12 11 26 26 H 1.07998 * 120.71190 * 179.97438 * 16 14 11 27 27 H 1.08996 * 109.46952 * 359.97364 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3837 2.1074 -1.3948 5 1 1.4956 2.6199 0.8027 6 1 3.5878 1.4122 0.5921 7 6 2.0077 -1.2126 0.0005 8 1 3.0830 -1.2152 0.1015 9 6 1.3075 -2.4328 -0.1311 10 7 -0.0291 -2.4361 -0.1189 11 6 -0.7144 -3.5497 -0.2435 12 6 -2.2206 -3.5000 -0.2297 13 7 -2.7023 -3.6362 1.1513 14 6 -0.0701 -4.7750 -0.3826 15 9 -0.7891 -5.9122 -0.5040 16 6 1.3213 -4.8201 -0.3953 17 6 2.0214 -3.6372 -0.2677 18 6 3.5285 -3.6360 -0.2765 19 9 3.9880 -2.8543 -1.3419 20 9 4.0013 -3.1059 0.9288 21 1 -0.4850 0.8400 -0.0004 22 1 -2.5565 -2.5476 -0.6395 23 1 -2.6165 -4.3157 -0.8348 24 1 -2.2979 -2.9291 1.7467 25 1 -3.7103 -3.6064 1.1872 26 1 1.8417 -5.7604 -0.5017 27 1 3.8919 -4.6571 -0.3918 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238584115.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:38 Heat of formation + Delta-G solvation = -141.059968 kcal Electronic energy + Delta-G solvation = -17985.559653 eV Core-core repulsion = 14520.240036 eV Total energy + Delta-G solvation = -3465.319617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.66465 -49.27458 -47.63388 -40.27193 -36.17233 -35.32053 -33.04023 -31.73672 -28.19528 -27.63682 -24.70581 -23.65563 -21.95154 -19.73837 -18.48276 -18.32611 -17.89537 -17.28490 -17.04807 -16.69309 -16.29914 -15.99309 -15.61018 -15.20934 -14.61547 -14.41139 -14.27388 -14.05702 -13.72138 -13.56981 -13.38001 -12.97206 -12.83821 -12.72190 -12.50171 -12.00682 -11.74592 -11.23972 -10.43181 -9.85220 -9.63747 -9.48950 -8.52069 -6.66890 0.44170 0.77330 1.37019 1.45281 1.50984 2.16080 2.58891 3.13998 3.42967 3.50922 3.73459 3.86156 3.93726 4.10908 4.23881 4.43068 4.46068 4.60756 4.82497 5.00140 5.08874 5.29994 5.43879 5.94193 6.06305 6.14876 6.47619 6.60777 6.72437 7.84768 8.23778 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.011243 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.248963 B = 2489.911931 C = 3686.143729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.025 3.975 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.258 1.258 7 C -0.429 4.429 8 H 0.092 0.908 9 C 0.234 3.766 10 N -0.482 5.482 11 C 0.137 3.863 12 C 0.126 3.874 13 N -0.839 5.839 14 C -0.115 4.115 15 F -0.156 7.156 16 C -0.040 4.040 17 C -0.337 4.337 18 C 0.337 3.663 19 F -0.216 7.216 20 F -0.217 7.217 21 H 0.286 0.714 22 H 0.038 0.962 23 H 0.087 0.913 24 H 0.342 0.658 25 H 0.355 0.645 26 H 0.155 0.845 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -2.499 -0.406 2.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.199 4.199 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.459 4.459 8 H 0.110 0.890 9 C 0.112 3.888 10 N -0.194 5.194 11 C -0.014 4.014 12 C -0.005 4.005 13 N -0.370 5.370 14 C -0.139 4.139 15 F -0.135 7.135 16 C -0.065 4.065 17 C -0.342 4.342 18 C 0.284 3.716 19 F -0.197 7.197 20 F -0.199 7.199 21 H 0.096 0.904 22 H 0.056 0.944 23 H 0.105 0.895 24 H 0.154 0.846 25 H 0.169 0.831 26 H 0.173 0.827 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.568 -2.245 -0.321 2.338 hybrid contribution 0.161 0.709 -0.275 0.777 sum 0.729 -1.536 -0.596 1.802 Atomic orbital electron populations 1.70152 1.08658 1.29865 1.26846 1.26996 0.95828 1.04594 0.92524 0.85172 0.79248 0.75767 0.79594 1.18618 1.18479 1.18176 1.20146 0.95579 0.90316 1.39820 0.88973 1.18703 0.88380 0.92579 0.89159 1.68664 1.07606 1.25357 1.17787 1.21812 0.97463 0.88173 0.93930 1.20369 0.88403 1.00260 0.91502 1.58633 1.13147 1.57170 1.08067 1.18143 0.89985 0.82703 1.23071 1.91297 1.78043 1.48825 1.95330 1.21001 0.92066 0.98214 0.95181 1.21025 0.95464 0.95025 1.22729 1.20194 0.88604 0.92298 0.70537 1.92923 1.90072 1.79108 1.57631 1.92915 1.89696 1.89402 1.47844 0.90356 0.94359 0.89521 0.84631 0.83074 0.82706 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.05 11.49 21.84 0.25 -36.80 15 2 C 0.02 1.22 5.49 85.28 0.47 1.68 15 3 Si 0.98 37.16 29.56 68.60 2.03 39.19 15 4 H -0.26 -9.61 7.11 99.48 0.71 -8.91 15 5 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 7 C -0.43 -22.54 8.16 23.45 0.19 -22.35 15 8 H 0.09 4.74 5.54 -2.91 -0.02 4.73 15 9 C 0.23 12.41 6.53 40.21 0.26 12.67 15 10 N -0.48 -25.36 7.79 -177.01 -1.38 -26.74 15 11 C 0.14 6.47 6.31 42.85 0.27 6.74 15 12 C 0.13 4.92 6.89 85.56 0.59 5.51 15 13 N -0.84 -29.00 9.61 -190.02 -1.83 -30.83 15 14 C -0.11 -5.15 7.30 22.72 0.17 -4.98 15 15 F -0.16 -6.57 16.48 44.97 0.74 -5.82 15 16 C -0.04 -1.66 9.77 22.46 0.22 -1.44 15 17 C -0.34 -15.39 5.43 -19.31 -0.10 -15.50 15 18 C 0.34 13.05 4.94 71.24 0.35 13.40 15 19 F -0.22 -9.00 16.16 44.97 0.73 -8.27 15 20 F -0.22 -9.08 15.93 44.97 0.72 -8.37 15 21 H 0.29 12.89 8.29 -92.71 -0.77 12.12 15 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 23 H 0.09 3.12 7.62 -2.39 -0.02 3.10 15 24 H 0.34 12.60 8.99 -89.69 -0.81 11.79 15 25 H 0.35 9.56 9.08 -89.69 -0.81 8.74 15 26 H 0.16 5.04 8.00 -2.91 -0.02 5.02 15 27 H 0.15 4.09 7.93 -2.39 -0.02 4.08 15 Total: -1.00 -60.54 252.76 3.31 -57.23 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.36 Total: 24.67 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 2.41 Total: -4.27 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -2.96 Total: -94.36 kcal Atomic # 9 Polarization: -24.64 SS G_CDS: 2.18 Total: -22.46 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Total: -60.54 3.31 -57.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238584115.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.831 kcal (2) G-P(sol) polarization free energy of solvation -60.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds