Wall clock time and date at job start Mon Mar 30 2020 03:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 119.99749 * 2 1 4 4 H 1.48506 * 109.47046 * 269.99852 * 3 2 1 5 5 H 1.48497 * 109.47125 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.46939 * 150.00038 * 3 2 1 7 7 C 1.40030 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99804 * 180.02562 * 7 2 1 9 9 C 1.41417 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.40561 * 119.81627 * 180.02562 * 9 7 2 11 11 C 1.38449 * 118.95059 * 180.02562 * 10 9 7 12 12 F 1.35098 * 120.73772 * 179.97438 * 11 10 9 13 13 C 1.39228 * 118.53305 * 359.97438 * 11 10 9 14 14 C 1.50703 * 120.23795 * 179.97438 * 13 11 10 15 15 F 1.39897 * 109.46825 * 120.01915 * 14 13 11 16 16 F 1.39891 * 109.47344 * 240.02181 * 14 13 11 17 17 C 1.38642 * 119.53016 * 359.97438 * 13 11 10 18 18 C 1.50698 * 119.48225 * 179.97438 * 17 13 11 19 19 N 1.46905 * 109.46910 * 90.00058 * 18 17 13 20 20 N 1.31466 * 121.04477 * 0.26038 * 17 13 11 21 21 H 0.96995 * 120.00555 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.52257 * 359.97438 * 10 9 7 23 23 H 1.09000 * 109.46763 * 0.02697 * 14 13 11 24 24 H 1.08995 * 109.47043 * 330.00206 * 18 17 13 25 25 H 1.09001 * 109.47556 * 210.00019 * 18 17 13 26 26 H 1.00901 * 110.99869 * 300.00472 * 19 18 17 27 27 H 1.00896 * 110.99543 * 63.95595 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3005 -2.4374 0.0016 10 6 2.0072 -3.6524 0.0027 11 6 1.2970 -4.8408 0.0032 12 9 1.9395 -6.0292 0.0038 13 6 -0.0942 -4.7842 0.0032 14 6 -0.9055 -6.0542 0.0032 15 9 -1.7126 -6.0919 1.1452 16 9 -1.7119 -6.0924 -1.1393 17 6 -0.7278 -3.5510 0.0032 18 6 -2.2336 -3.4910 0.0026 19 7 -2.7234 -3.4717 1.3874 20 7 -0.0359 -2.4332 -0.0019 21 1 -0.4851 0.8400 -0.0004 22 1 3.0873 -3.6588 0.0023 23 1 -0.2350 -6.9136 0.0037 24 1 -2.6319 -4.3656 -0.5115 25 1 -2.5611 -2.5871 -0.5112 26 1 -2.4328 -4.2998 1.8853 27 1 -2.4207 -2.6369 1.8664 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238584602.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:48 Heat of formation + Delta-G solvation = -142.483896 kcal Electronic energy + Delta-G solvation = -18077.777739 eV Core-core repulsion = 14612.396375 eV Total energy + Delta-G solvation = -3465.381363 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.11805 -49.78265 -47.86755 -40.36806 -36.34303 -35.09573 -32.84620 -31.82639 -29.03083 -26.86343 -25.33207 -23.18899 -22.33138 -19.86000 -19.02621 -18.16023 -18.04030 -17.42222 -17.03777 -16.78112 -16.56749 -16.47561 -15.28261 -15.10890 -14.99497 -14.83830 -14.61136 -14.26383 -14.03593 -13.66324 -13.28453 -12.95240 -12.84299 -12.74915 -12.28768 -12.00357 -11.79870 -11.32023 -10.24604 -10.08818 -9.88109 -9.52220 -8.53460 -6.83345 0.41524 0.66210 1.40658 1.47690 1.55564 2.14911 2.56322 2.92851 3.25538 3.40788 3.52666 3.70704 3.81164 3.90657 4.25748 4.28806 4.55702 4.70733 4.84966 4.98766 5.10166 5.23319 5.30423 5.80884 6.01160 6.10274 6.42410 6.50611 6.64711 7.87160 8.20413 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.008206 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.245362 B = 3411.317770 C = 4085.054036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.021 3.979 3 Si 0.995 3.005 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.253 1.253 7 C -0.422 4.422 8 H 0.103 0.897 9 C 0.237 3.763 10 C -0.325 4.325 11 C 0.182 3.818 12 F -0.141 7.141 13 C -0.414 4.414 14 C 0.339 3.661 15 F -0.205 7.205 16 F -0.209 7.209 17 C 0.164 3.836 18 C 0.115 3.885 19 N -0.826 5.826 20 N -0.503 5.503 21 H 0.289 0.711 22 H 0.128 0.872 23 H 0.129 0.871 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.343 0.657 27 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -3.094 0.731 3.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.205 4.205 3 Si 0.814 3.186 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.176 1.176 7 C -0.450 4.450 8 H 0.121 0.879 9 C 0.115 3.885 10 C -0.348 4.348 11 C 0.157 3.843 12 F -0.120 7.120 13 C -0.422 4.422 14 C 0.285 3.715 15 F -0.186 7.186 16 F -0.190 7.190 17 C 0.011 3.989 18 C -0.017 4.017 19 N -0.355 5.355 20 N -0.217 5.217 21 H 0.100 0.900 22 H 0.146 0.854 23 H 0.146 0.854 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.158 0.842 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.969 -2.178 0.412 2.419 hybrid contribution 1.925 -0.476 0.170 1.990 sum 0.955 -2.654 0.583 2.880 Atomic orbital electron populations 1.70159 1.08982 1.30367 1.24925 1.27125 0.95875 1.04850 0.92601 0.84996 0.79015 0.74910 0.79680 1.18605 1.19015 1.17602 1.20295 0.95623 0.89834 1.39290 0.87907 1.18903 0.88619 0.92510 0.88422 1.21861 1.00471 0.91804 1.20705 1.17378 0.89438 0.80313 0.97141 1.91391 1.82038 1.44764 1.93786 1.20496 0.92524 0.96632 1.32513 1.19817 0.83371 0.97733 0.70559 1.92863 1.76510 1.97412 1.51859 1.92901 1.76551 1.97515 1.52070 1.22385 0.98828 0.87732 0.89972 1.20842 0.85476 1.03078 0.92299 1.59186 1.64874 1.08387 1.03013 1.68705 1.07274 1.26529 1.19195 0.89999 0.85442 0.85404 0.89259 0.90598 0.84203 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -35.09 11.46 21.84 0.25 -34.84 15 2 C 0.02 0.96 5.50 85.29 0.47 1.43 15 3 Si 0.99 33.78 29.56 68.60 2.03 35.80 15 4 H -0.26 -8.67 7.11 99.48 0.71 -7.96 15 5 H -0.27 -8.67 7.11 99.48 0.71 -7.96 15 6 H -0.25 -8.25 7.11 99.48 0.71 -7.54 15 7 C -0.42 -20.62 9.14 23.49 0.21 -20.41 15 8 H 0.10 4.60 7.85 -2.91 -0.02 4.57 15 9 C 0.24 12.22 6.55 40.22 0.26 12.48 15 10 C -0.32 -15.27 9.83 22.89 0.23 -15.05 15 11 C 0.18 7.97 7.32 22.56 0.17 8.14 15 12 F -0.14 -5.47 16.32 44.97 0.73 -4.74 15 13 C -0.41 -17.78 5.41 -19.53 -0.11 -17.88 15 14 C 0.34 12.09 4.94 71.24 0.35 12.44 15 15 F -0.21 -7.15 14.32 44.97 0.64 -6.51 15 16 F -0.21 -7.59 15.35 44.97 0.69 -6.90 15 17 C 0.16 7.56 6.29 42.71 0.27 7.83 15 18 C 0.11 4.68 6.30 85.56 0.54 5.22 15 19 N -0.83 -30.65 9.60 -190.00 -1.82 -32.47 15 20 N -0.50 -25.94 7.77 -177.32 -1.38 -27.32 15 21 H 0.29 12.53 8.29 -92.71 -0.77 11.76 15 22 H 0.13 5.50 8.06 -2.91 -0.02 5.47 15 23 H 0.13 3.88 7.21 -2.39 -0.02 3.86 15 24 H 0.09 3.48 5.49 -2.39 -0.01 3.47 15 25 H 0.08 3.22 8.14 -2.39 -0.02 3.20 15 26 H 0.34 12.39 6.63 -89.69 -0.59 11.80 15 27 H 0.34 12.95 9.06 -89.70 -0.81 12.13 15 Total: -1.00 -53.34 247.70 3.38 -49.96 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.15 Total: 32.81 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 2.39 Total: -5.80 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -2.95 Total: -94.63 kcal Atomic # 9 Polarization: -20.21 SS G_CDS: 2.07 Total: -18.14 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 2.03 Total: 35.80 kcal Total: -53.34 3.38 -49.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238584602.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.524 kcal (2) G-P(sol) polarization free energy of solvation -53.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds