Wall clock time and date at job start Mon Mar 30 2020 03:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00266 * 2 1 4 4 H 1.48496 * 109.47226 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47001 * 300.00407 * 3 2 1 6 6 H 1.48497 * 109.47073 * 59.99961 * 3 2 1 7 7 C 1.37882 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00115 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99625 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47801 * 300.00231 * 9 7 2 11 11 N 1.46900 * 109.47258 * 60.00721 * 9 7 2 12 12 C 1.50706 * 109.46846 * 180.02562 * 9 7 2 13 13 C 1.38800 * 120.02155 * 105.02835 * 12 9 7 14 14 N 1.39987 * 120.04905 * 359.94755 * 13 12 9 15 15 C 1.39029 * 119.90838 * 179.97438 * 13 12 9 16 16 F 1.35098 * 120.02443 * 179.97438 * 15 13 12 17 17 C 1.38318 * 119.95902 * 359.97088 * 15 13 12 18 18 C 1.38412 * 120.04641 * 0.02562 * 17 15 13 19 19 F 1.35103 * 119.95402 * 180.27641 * 18 17 15 20 20 C 1.38329 * 120.02367 * 284.99890 * 12 9 7 21 21 F 1.35104 * 119.98361 * 0.02562 * 20 12 9 22 22 H 0.96998 * 120.00181 * 359.97438 * 1 2 3 23 23 H 1.00903 * 110.99571 * 296.04438 * 11 9 7 24 24 H 1.00896 * 111.00049 * 59.99256 * 11 9 7 25 25 H 0.97002 * 119.99563 * 0.02562 * 14 13 12 26 26 H 0.96998 * 120.00439 * 179.97438 * 14 13 12 27 27 H 1.07995 * 119.97632 * 180.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4060 -2.5767 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 6 2.4447 -4.3750 1.1601 14 7 1.7525 -4.0478 2.3321 15 6 3.3483 -5.4316 1.1574 16 9 3.5592 -6.1437 2.2859 17 6 4.0312 -5.7533 -0.0016 18 6 3.8160 -5.0239 -1.1581 19 9 4.4799 -5.3434 -2.2905 20 6 2.9156 -3.9693 -1.1574 21 9 2.7073 -3.2588 -2.2875 22 1 -0.4850 0.8400 0.0004 23 1 -0.3013 -1.8572 -1.1908 24 1 0.9638 -2.5251 -2.0390 25 1 1.1223 -3.3105 2.3333 26 1 1.9026 -4.5589 3.1428 27 1 4.7328 -6.5743 -0.0042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238585327.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:52 Heat of formation + Delta-G solvation = -128.665738 kcal Electronic energy + Delta-G solvation = -18046.111665 eV Core-core repulsion = 14581.329503 eV Total energy + Delta-G solvation = -3464.782163 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.36105 -49.87284 -49.44052 -40.23553 -36.53493 -35.25516 -33.42348 -30.85742 -29.22135 -27.97932 -25.31130 -23.37753 -22.28358 -19.54687 -18.99980 -18.69813 -18.42159 -17.31692 -17.06786 -16.91418 -16.63460 -16.43623 -16.18814 -15.83286 -15.46522 -15.24450 -14.90647 -14.45246 -13.94479 -13.55153 -13.42067 -13.12466 -12.96703 -12.71574 -12.56400 -11.94590 -11.60630 -11.35437 -10.71454 -9.68656 -9.24129 -8.52990 -8.13580 -6.39908 -0.07073 0.11071 1.34779 1.39647 1.49243 2.28366 2.40721 2.66860 2.91658 3.02246 3.12156 3.46068 3.63119 4.03800 4.39058 4.61536 4.67437 4.74913 4.91189 4.99950 5.45496 5.61898 5.73175 6.01314 6.32505 6.57216 6.83694 6.89015 7.07944 7.35551 8.79102 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.008810 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.038226 B = 3177.477820 C = 3693.378133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.030 3.970 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.557 4.557 8 H 0.043 0.957 9 C 0.256 3.744 10 H 0.041 0.959 11 N -0.854 5.854 12 C -0.122 4.122 13 C 0.209 3.791 14 N -0.851 5.851 15 C 0.031 3.969 16 F -0.128 7.128 17 C -0.109 4.109 18 C 0.019 3.981 19 F -0.135 7.135 20 C 0.099 3.901 21 F -0.129 7.129 22 H 0.269 0.731 23 H 0.348 0.652 24 H 0.323 0.677 25 H 0.409 0.591 26 H 0.412 0.588 27 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 -8.936 2.953 10.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.172 4.172 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.597 4.597 8 H 0.061 0.939 9 C 0.146 3.854 10 H 0.058 0.942 11 N -0.386 5.386 12 C -0.128 4.128 13 C 0.100 3.900 14 N -0.392 5.392 15 C 0.007 3.993 16 F -0.107 7.107 17 C -0.129 4.129 18 C -0.003 4.003 19 F -0.114 7.114 20 C 0.077 3.923 21 F -0.108 7.108 22 H 0.078 0.922 23 H 0.163 0.837 24 H 0.136 0.864 25 H 0.242 0.758 26 H 0.243 0.757 27 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.975 -9.551 3.190 11.232 hybrid contribution 0.528 2.159 -0.235 2.235 sum 5.503 -7.392 2.956 9.678 Atomic orbital electron populations 1.69807 1.06615 1.28035 1.50451 1.25606 0.95711 1.01913 0.93921 0.85575 0.78767 0.79856 0.77830 1.20106 1.20659 1.20067 1.21968 0.93131 0.92214 1.52398 0.93916 1.17601 0.88536 0.87520 0.91787 0.94158 1.59569 1.18726 1.55470 1.04881 1.19603 1.02157 1.00244 0.90798 1.17367 0.92178 0.92228 0.88241 1.42514 1.47818 1.39597 1.09271 1.16486 1.02996 0.95659 0.84183 1.91457 1.94146 1.76714 1.48389 1.20716 1.01752 1.01696 0.88702 1.16964 0.99430 0.99252 0.84674 1.91465 1.79054 1.92283 1.48552 1.17428 0.98679 0.92735 0.83435 1.91330 1.93342 1.77183 1.48935 0.92156 0.83750 0.86396 0.75829 0.75740 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.09 11.54 21.45 0.25 -47.84 15 2 C 0.03 1.53 5.38 84.66 0.46 1.99 15 3 Si 0.95 42.03 29.54 68.60 2.03 44.06 15 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.56 -29.12 8.63 25.60 0.22 -28.90 15 8 H 0.04 2.31 7.74 -2.91 -0.02 2.29 15 9 C 0.26 12.19 2.70 43.42 0.12 12.31 15 10 H 0.04 1.98 5.89 -2.39 -0.01 1.96 15 11 N -0.85 -41.15 9.07 -174.95 -1.59 -42.73 15 12 C -0.12 -5.05 4.91 -19.71 -0.10 -5.14 15 13 C 0.21 7.28 6.74 38.16 0.26 7.54 15 14 N -0.85 -25.64 9.02 -51.17 -0.46 -26.11 15 15 C 0.03 0.94 7.31 22.48 0.16 1.10 15 16 F -0.13 -3.40 16.64 44.97 0.75 -2.65 15 17 C -0.11 -3.05 9.99 22.33 0.22 -2.82 15 18 C 0.02 0.65 7.30 22.41 0.16 0.82 15 19 F -0.13 -4.50 17.18 44.97 0.77 -3.73 15 20 C 0.10 4.00 7.01 22.39 0.16 4.16 15 21 F -0.13 -5.68 14.22 44.97 0.64 -5.04 15 22 H 0.27 13.54 8.31 -92.71 -0.77 12.77 15 23 H 0.35 17.74 7.08 -89.69 -0.63 17.11 15 24 H 0.32 15.55 6.13 -89.70 -0.55 15.00 15 25 H 0.41 13.36 6.56 -92.71 -0.61 12.76 15 26 H 0.41 9.75 8.32 -92.71 -0.77 8.98 15 27 H 0.19 3.74 8.06 -2.91 -0.02 3.72 15 Total: -1.00 -55.34 246.57 2.78 -52.57 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: -1.27 Total: 40.43 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 1.66 Total: -8.95 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -1.80 Total: -116.68 kcal Atomic # 9 Polarization: -13.58 SS G_CDS: 2.16 Total: -11.42 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -55.34 2.78 -52.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585327.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.098 kcal (2) G-P(sol) polarization free energy of solvation -55.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds