Wall clock time and date at job start Mon Mar 30 2020 03:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48503 * 109.47087 * 270.00036 * 3 2 1 5 5 H 1.48502 * 109.47107 * 29.99885 * 3 2 1 6 6 H 1.48501 * 109.47116 * 149.99898 * 3 2 1 7 7 C 1.39912 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00432 * 199.38277 * 7 2 1 9 9 C 1.41354 * 119.99995 * 19.39580 * 7 2 1 10 10 C 1.40744 * 120.62797 * 54.35714 * 9 7 2 11 11 C 1.50700 * 119.85032 * 0.25464 * 10 9 7 12 12 N 1.46895 * 109.47312 * 83.94594 * 11 10 9 13 13 N 1.31523 * 120.30507 * 180.28053 * 10 9 7 14 14 C 1.32311 * 121.80339 * 359.97438 * 13 10 9 15 15 F 1.35094 * 119.37138 * 180.02562 * 14 13 10 16 16 C 1.38956 * 121.26292 * 0.02562 * 14 13 10 17 17 C 1.36894 * 119.53604 * 359.97438 * 16 14 13 18 18 C 1.50708 * 120.82504 * 179.97438 * 17 16 14 19 19 F 1.39901 * 109.46602 * 120.02391 * 18 17 16 20 20 F 1.39899 * 109.46857 * 240.01909 * 18 17 16 21 21 H 0.96996 * 120.00076 * 355.02143 * 1 2 3 22 22 H 1.09004 * 109.47361 * 203.95210 * 11 10 9 23 23 H 1.09004 * 109.46809 * 323.94767 * 11 10 9 24 24 H 1.00907 * 110.99590 * 56.04733 * 12 11 10 25 25 H 1.00896 * 111.00174 * 180.02562 * 12 11 10 26 26 H 1.08000 * 120.23276 * 179.97438 * 16 14 13 27 27 H 1.08991 * 109.47184 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0465 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4403 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0422 -1.2381 0.3109 9 6 1.3616 -2.4013 -0.4055 10 6 0.7228 -2.4789 -1.6572 11 6 0.7309 -1.2865 -2.5787 12 7 1.9813 -1.2716 -3.3493 13 7 0.1184 -3.5872 -2.0262 14 6 0.0875 -4.6569 -1.2482 15 9 -0.5471 -5.7698 -1.6768 16 6 0.6952 -4.6575 0.0014 17 6 1.3397 -3.5318 0.4390 18 6 2.0082 -3.5003 1.7893 19 9 3.3731 -3.2392 1.6279 20 9 1.4305 -2.4950 2.5722 21 1 -0.4850 0.8368 0.0729 22 1 -0.1163 -1.3493 -3.2617 23 1 0.6559 -0.3720 -1.9901 24 1 2.1055 -2.1368 -3.8536 25 1 2.0112 -0.4806 -3.9749 26 1 0.6594 -5.5399 0.6231 27 1 1.8783 -4.4640 2.2816 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238588197.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:43 Heat of formation + Delta-G solvation = -113.722214 kcal Electronic energy + Delta-G solvation = -18253.758147 eV Core-core repulsion = 14789.623984 eV Total energy + Delta-G solvation = -3464.134163 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.00622 -47.84774 -45.99340 -38.91358 -34.52725 -33.56201 -31.90656 -29.79539 -26.45746 -25.49828 -23.92829 -21.40726 -20.34580 -17.73952 -17.06345 -16.79084 -16.26910 -15.41964 -15.37346 -14.95146 -14.90196 -14.76118 -13.99708 -13.66417 -12.95133 -12.80437 -12.50957 -12.38779 -12.06434 -11.94807 -11.69641 -11.59995 -11.14449 -11.02712 -10.72620 -10.38367 -10.21066 -9.08499 -8.91993 -8.55144 -7.89680 -7.43038 -6.89402 -4.62123 2.08213 2.26217 3.05424 3.09062 3.13115 3.91812 4.36958 4.53980 4.74230 4.88895 5.04973 5.41561 5.59870 5.75187 5.95044 5.99663 6.20105 6.37681 6.49877 6.88796 7.00956 7.16687 7.32846 7.63130 7.83759 8.09795 8.17991 8.32837 8.66135 8.98853 10.08894 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.012409 C = 0.008840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.662153 B = 2255.882451 C = 3166.709416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.086 3.914 3 Si 0.908 3.092 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.452 4.452 8 H 0.096 0.904 9 C 0.128 3.872 10 C 0.114 3.886 11 C 0.126 3.874 12 N -0.834 5.834 13 N -0.490 5.490 14 C 0.169 3.831 15 F -0.143 7.143 16 C -0.125 4.125 17 C -0.213 4.213 18 C 0.340 3.660 19 F -0.206 7.206 20 F -0.194 7.194 21 H 0.285 0.715 22 H 0.017 0.983 23 H 0.111 0.889 24 H 0.331 0.669 25 H 0.332 0.668 26 H 0.121 0.879 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 -1.551 0.285 2.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.130 4.130 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.483 4.483 8 H 0.114 0.886 9 C 0.122 3.878 10 C -0.031 4.031 11 C -0.004 4.004 12 N -0.363 5.363 13 N -0.203 5.203 14 C 0.019 3.981 15 F -0.123 7.123 16 C -0.147 4.147 17 C -0.221 4.221 18 C 0.287 3.713 19 F -0.187 7.187 20 F -0.176 7.176 21 H 0.096 0.904 22 H 0.035 0.965 23 H 0.129 0.871 24 H 0.143 0.857 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.902 -1.425 0.178 2.383 hybrid contribution -0.155 0.415 -0.050 0.446 sum 1.747 -1.010 0.128 2.022 Atomic orbital electron populations 1.69798 1.07548 1.30081 1.35270 1.25680 0.94564 1.00883 0.91892 0.86301 0.80706 0.80151 0.79581 1.18777 1.20548 1.18405 1.19264 0.99213 0.90152 1.39645 0.88607 1.17989 0.88328 0.92117 0.89330 1.21044 0.98033 0.90659 0.93389 1.20635 0.88669 0.97397 0.93744 1.58610 1.38511 1.06930 1.32230 1.66263 1.17518 0.99899 1.36652 1.17370 1.04161 0.83956 0.92567 1.91435 1.80978 1.48985 1.90876 1.20752 0.99730 0.98537 0.95680 1.20469 1.07591 0.97582 0.96422 1.19789 0.74388 0.88504 0.88642 1.92943 1.33952 1.95471 1.96382 1.92993 1.84265 1.64820 1.75481 0.90428 0.96494 0.87104 0.85731 0.85665 0.86107 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.66 11.78 55.55 0.65 -19.01 15 2 C 0.09 2.05 3.40 -17.34 -0.06 1.99 15 3 Si 0.91 18.38 29.60 -169.99 -5.03 13.35 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 7 C -0.45 -11.25 6.88 -37.77 -0.26 -11.51 15 8 H 0.10 2.43 7.13 -52.49 -0.37 2.06 15 9 C 0.13 3.18 5.08 -106.67 -0.54 2.64 15 10 C 0.11 2.80 6.09 -81.78 -0.50 2.30 15 11 C 0.13 2.78 6.43 -4.98 -0.03 2.74 15 12 N -0.83 -15.81 9.61 -11.41 -0.11 -15.92 15 13 N -0.49 -12.00 10.28 -9.09 -0.09 -12.10 15 14 C 0.17 3.92 8.41 -17.08 -0.14 3.77 15 15 F -0.14 -3.11 17.28 2.25 0.04 -3.07 15 16 C -0.13 -2.65 9.66 -39.80 -0.38 -3.03 15 17 C -0.21 -4.83 5.41 -104.01 -0.56 -5.39 15 18 C 0.34 6.79 5.06 36.01 0.18 6.98 15 19 F -0.21 -4.29 16.15 2.25 0.04 -4.25 15 20 F -0.19 -4.30 16.66 2.25 0.04 -4.27 15 21 H 0.28 6.43 8.30 -40.82 -0.34 6.09 15 22 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 23 H 0.11 2.57 4.25 -51.93 -0.22 2.35 15 24 H 0.33 5.96 8.99 -39.29 -0.35 5.61 15 25 H 0.33 5.26 9.08 -39.29 -0.36 4.90 15 26 H 0.12 2.07 7.98 -52.49 -0.42 1.65 15 27 H 0.10 1.45 7.92 -51.93 -0.41 1.04 15 LS Contribution 250.89 15.07 3.78 3.78 Total: -1.00 -27.54 250.89 -4.68 -32.22 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -1.69 Total: 8.78 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.30 Total: 0.49 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.45 Total: -47.02 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 0.11 Total: -11.59 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.54 -4.68 -32.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238588197.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.506 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds