Wall clock time and date at job start Mon Mar 30 2020 03:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48503 * 109.47087 * 270.00036 * 3 2 1 5 5 H 1.48502 * 109.47107 * 29.99885 * 3 2 1 6 6 H 1.48501 * 109.47116 * 149.99898 * 3 2 1 7 7 C 1.39912 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00432 * 199.38277 * 7 2 1 9 9 C 1.41354 * 119.99995 * 19.39580 * 7 2 1 10 10 C 1.40744 * 120.62797 * 54.35714 * 9 7 2 11 11 C 1.50700 * 119.85032 * 0.25464 * 10 9 7 12 12 N 1.46895 * 109.47312 * 83.94594 * 11 10 9 13 13 N 1.31523 * 120.30507 * 180.28053 * 10 9 7 14 14 C 1.32311 * 121.80339 * 359.97438 * 13 10 9 15 15 F 1.35094 * 119.37138 * 180.02562 * 14 13 10 16 16 C 1.38956 * 121.26292 * 0.02562 * 14 13 10 17 17 C 1.36894 * 119.53604 * 359.97438 * 16 14 13 18 18 C 1.50708 * 120.82504 * 179.97438 * 17 16 14 19 19 F 1.39901 * 109.46602 * 120.02391 * 18 17 16 20 20 F 1.39899 * 109.46857 * 240.01909 * 18 17 16 21 21 H 0.96996 * 120.00076 * 355.02143 * 1 2 3 22 22 H 1.09004 * 109.47361 * 203.95210 * 11 10 9 23 23 H 1.09004 * 109.46809 * 323.94767 * 11 10 9 24 24 H 1.00907 * 110.99590 * 56.04733 * 12 11 10 25 25 H 1.00896 * 111.00174 * 180.02562 * 12 11 10 26 26 H 1.08000 * 120.23276 * 179.97438 * 16 14 13 27 27 H 1.08991 * 109.47184 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0465 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4403 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0422 -1.2381 0.3109 9 6 1.3616 -2.4013 -0.4055 10 6 0.7228 -2.4789 -1.6572 11 6 0.7309 -1.2865 -2.5787 12 7 1.9813 -1.2716 -3.3493 13 7 0.1184 -3.5872 -2.0262 14 6 0.0875 -4.6569 -1.2482 15 9 -0.5471 -5.7698 -1.6768 16 6 0.6952 -4.6575 0.0014 17 6 1.3397 -3.5318 0.4390 18 6 2.0082 -3.5003 1.7893 19 9 3.3731 -3.2392 1.6279 20 9 1.4305 -2.4950 2.5722 21 1 -0.4850 0.8368 0.0729 22 1 -0.1163 -1.3493 -3.2617 23 1 0.6559 -0.3720 -1.9901 24 1 2.1055 -2.1368 -3.8536 25 1 2.0112 -0.4806 -3.9749 26 1 0.6594 -5.5399 0.6231 27 1 1.8783 -4.4640 2.2816 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238588197.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:43 Heat of formation + Delta-G solvation = -132.732790 kcal Electronic energy + Delta-G solvation = -18254.582508 eV Core-core repulsion = 14789.623984 eV Total energy + Delta-G solvation = -3464.958524 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.61584 -49.59565 -47.62241 -40.67812 -36.25787 -35.27652 -33.63160 -31.54682 -28.16620 -27.20356 -25.64660 -23.16849 -22.04867 -19.53480 -18.75716 -18.45988 -17.89032 -17.10385 -17.06312 -16.66066 -16.60186 -16.43812 -15.67283 -15.29020 -14.60546 -14.51476 -14.20062 -14.02456 -13.79082 -13.66869 -13.38209 -13.28483 -12.87510 -12.78072 -12.34521 -11.99255 -11.86997 -10.86183 -10.66516 -10.33208 -9.46642 -9.22913 -8.66774 -6.47201 0.34885 0.45770 1.42728 1.47167 1.53954 2.25274 2.59841 2.89375 3.09411 3.21002 3.45653 3.78969 4.05151 4.21741 4.29812 4.40268 4.46782 4.64150 4.77342 5.10895 5.27174 5.39525 5.56139 5.88654 6.27274 6.30615 6.50418 6.72517 6.84898 7.18621 8.33688 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.012409 C = 0.008840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.662153 B = 2255.882451 C = 3166.709416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.059 3.941 3 Si 0.962 3.038 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.470 4.470 8 H 0.082 0.918 9 C 0.101 3.899 10 C 0.094 3.906 11 C 0.132 3.868 12 N -0.833 5.833 13 N -0.510 5.510 14 C 0.155 3.845 15 F -0.137 7.137 16 C -0.115 4.115 17 C -0.224 4.224 18 C 0.336 3.664 19 F -0.213 7.213 20 F -0.210 7.210 21 H 0.291 0.709 22 H 0.014 0.986 23 H 0.100 0.900 24 H 0.337 0.663 25 H 0.349 0.651 26 H 0.168 0.832 27 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 -2.003 0.760 3.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.155 4.155 3 Si 0.783 3.217 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.501 4.501 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.050 4.050 11 C 0.001 3.999 12 N -0.364 5.364 13 N -0.224 5.224 14 C 0.005 3.995 15 F -0.117 7.117 16 C -0.136 4.136 17 C -0.232 4.232 18 C 0.283 3.717 19 F -0.195 7.195 20 F -0.192 7.192 21 H 0.101 0.899 22 H 0.032 0.968 23 H 0.117 0.883 24 H 0.149 0.851 25 H 0.163 0.837 26 H 0.185 0.815 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.318 -1.871 0.636 3.046 hybrid contribution -0.314 0.437 -0.217 0.580 sum 2.003 -1.435 0.419 2.499 Atomic orbital electron populations 1.69825 1.08641 1.31054 1.36149 1.26239 0.95029 1.03143 0.91078 0.85510 0.79267 0.76955 0.79926 1.17814 1.19779 1.18902 1.19207 0.98724 0.91089 1.41053 0.89976 1.18332 0.88984 0.93177 0.89931 1.21329 0.98532 0.91212 0.93964 1.20481 0.89666 0.96193 0.93562 1.58517 1.36968 1.08103 1.32822 1.66252 1.18130 1.00475 1.37540 1.17765 1.04415 0.83916 0.93411 1.91446 1.80869 1.48468 1.90920 1.21099 0.97743 0.99583 0.95160 1.20951 1.07346 0.97350 0.97587 1.20317 0.73496 0.90277 0.87640 1.92924 1.34496 1.95668 1.96397 1.92958 1.84545 1.65991 1.75657 0.89887 0.96797 0.88273 0.85084 0.83694 0.81491 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.85 11.78 21.82 0.26 -40.59 15 2 C 0.06 2.79 3.40 85.24 0.29 3.08 15 3 Si 0.96 37.29 29.60 68.60 2.03 39.32 15 4 H -0.25 -9.39 7.11 99.48 0.71 -8.69 15 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 7 C -0.47 -23.42 6.88 23.44 0.16 -23.26 15 8 H 0.08 4.21 7.13 -2.91 -0.02 4.19 15 9 C 0.10 5.00 5.08 -21.19 -0.11 4.89 15 10 C 0.09 4.60 6.09 43.22 0.26 4.86 15 11 C 0.13 5.82 6.43 85.56 0.55 6.37 15 12 N -0.83 -31.11 9.61 -190.01 -1.83 -32.93 15 13 N -0.51 -24.79 10.28 -182.69 -1.88 -26.67 15 14 C 0.16 6.95 8.41 84.79 0.71 7.66 15 15 F -0.14 -5.72 17.28 44.97 0.78 -4.95 15 16 C -0.11 -4.54 9.66 22.13 0.21 -4.33 15 17 C -0.22 -9.80 5.41 -19.47 -0.11 -9.90 15 18 C 0.34 12.58 5.06 71.24 0.36 12.94 15 19 F -0.21 -8.55 16.15 44.97 0.73 -7.82 15 20 F -0.21 -9.02 16.66 44.97 0.75 -8.27 15 21 H 0.29 13.13 8.30 -92.71 -0.77 12.36 15 22 H 0.01 0.60 8.14 -2.39 -0.02 0.58 15 23 H 0.10 4.62 4.25 -2.39 -0.01 4.61 15 24 H 0.34 11.95 8.99 -89.69 -0.81 11.14 15 25 H 0.35 10.71 9.08 -89.70 -0.81 9.90 15 26 H 0.17 4.92 7.98 -2.91 -0.02 4.90 15 27 H 0.15 3.98 7.92 -2.39 -0.02 3.96 15 Total: -1.00 -58.57 250.89 2.81 -55.75 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.36 Total: 23.83 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 2.34 Total: 2.32 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -3.45 Total: -100.19 kcal Atomic # 9 Polarization: -23.29 SS G_CDS: 2.25 Total: -21.04 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -58.57 2.81 -55.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238588197.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.980 kcal (2) G-P(sol) polarization free energy of solvation -58.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds