Wall clock time and date at job start Mon Mar 30 2020 03:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86798 * 119.99909 * 2 1 4 4 H 1.48507 * 109.47010 * 272.56852 * 3 2 1 5 5 H 1.48499 * 109.47404 * 32.56670 * 3 2 1 6 6 H 1.48505 * 109.47273 * 152.56975 * 3 2 1 7 7 C 1.40037 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99705 * 347.16112 * 7 2 1 9 9 C 1.41526 * 120.00168 * 167.16660 * 7 2 1 10 10 C 1.40965 * 121.01602 * 329.67128 * 9 7 2 11 11 C 1.38050 * 118.83728 * 180.02562 * 10 9 7 12 12 F 1.35097 * 119.52683 * 179.97438 * 11 10 9 13 13 N 1.32194 * 120.94110 * 359.73619 * 11 10 9 14 14 C 1.32056 * 122.28308 * 0.53622 * 13 11 10 15 15 C 1.50702 * 119.47368 * 179.74521 * 14 13 11 16 16 N 1.46904 * 109.46819 * 263.14417 * 15 14 13 17 17 C 1.37663 * 121.04920 * 359.46851 * 14 13 11 18 18 C 1.50697 * 120.54278 * 180.28151 * 17 14 13 19 19 F 1.39901 * 109.47582 * 124.26730 * 18 17 14 20 20 F 1.39894 * 109.47049 * 244.26821 * 18 17 14 21 21 H 0.96998 * 119.99755 * 0.02562 * 1 2 3 22 22 H 1.08010 * 120.57818 * 0.03621 * 10 9 7 23 23 H 1.09001 * 109.46932 * 143.15156 * 15 14 13 24 24 H 1.08990 * 109.47368 * 23.14673 * 15 14 13 25 25 H 1.00894 * 110.99696 * 56.05234 * 16 15 14 26 26 H 1.00905 * 110.99813 * 180.02562 * 16 15 14 27 27 H 1.09006 * 109.46965 * 4.26892 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4346 2.0778 -1.3987 5 1 1.4671 2.6364 0.7536 6 1 3.5652 1.4251 0.6450 7 6 2.0077 -1.2128 0.0005 8 1 1.4879 -2.1363 0.2088 9 6 3.3964 -1.2282 -0.2717 10 6 3.9806 -0.2680 -1.1224 11 6 5.3397 -0.3255 -1.3573 12 9 5.9140 0.5876 -2.1708 13 7 6.0880 -1.2583 -0.7939 14 6 5.5829 -2.1804 0.0052 15 6 6.4938 -3.2179 0.6091 16 7 6.4446 -4.4432 -0.1999 17 6 4.2384 -2.2054 0.2998 18 6 3.6751 -3.2591 1.2182 19 9 2.9977 -2.6425 2.2756 20 9 2.7867 -4.0718 0.5060 21 1 -0.4850 0.8400 -0.0004 22 1 3.3753 0.4994 -1.5823 23 1 6.1680 -3.4402 1.6253 24 1 7.5148 -2.8371 0.6300 25 1 6.6802 -4.2509 -1.1619 26 1 7.0472 -5.1551 0.1851 27 1 4.4879 -3.8686 1.6135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238588454.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:41 Heat of formation + Delta-G solvation = -142.329125 kcal Electronic energy + Delta-G solvation = -18191.645249 eV Core-core repulsion = 14726.270597 eV Total energy + Delta-G solvation = -3465.374652 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.95514 -49.61650 -47.60304 -40.78388 -36.57593 -35.49430 -33.75311 -32.01551 -28.62907 -27.08979 -25.88356 -22.87649 -22.63857 -19.95047 -18.62886 -18.32694 -18.06428 -17.89945 -17.22629 -17.02523 -16.73011 -16.41029 -15.58132 -15.34976 -14.73732 -14.70043 -14.55822 -14.10981 -14.01793 -13.88378 -13.43484 -13.36372 -13.11327 -12.86686 -12.74878 -12.11012 -11.68084 -11.26348 -10.51433 -10.35197 -9.81067 -9.60940 -9.15235 -6.95832 0.06987 0.42573 1.16990 1.28349 1.35631 1.95398 2.30223 2.68681 3.03847 3.19219 3.52843 3.70571 3.84347 3.91278 4.11904 4.31799 4.45650 4.53959 4.64481 4.84077 4.87974 5.14070 5.38419 5.76685 6.00423 6.10840 6.20421 6.44230 6.64191 6.96959 7.89751 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.012830 C = 0.008601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.813137 B = 2181.886745 C = 3254.471064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.056 3.944 3 Si 0.960 3.040 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.431 4.431 8 H 0.079 0.921 9 C 0.128 3.872 10 C -0.323 4.323 11 C 0.326 3.674 12 F -0.128 7.128 13 N -0.602 5.602 14 C 0.209 3.791 15 C 0.113 3.887 16 N -0.845 5.845 17 C -0.318 4.318 18 C 0.336 3.664 19 F -0.217 7.217 20 F -0.218 7.218 21 H 0.306 0.694 22 H 0.124 0.876 23 H 0.107 0.893 24 H 0.061 0.939 25 H 0.346 0.654 26 H 0.364 0.636 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.845 -3.218 2.330 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.165 4.165 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.460 4.460 8 H 0.097 0.903 9 C 0.120 3.880 10 C -0.347 4.347 11 C 0.177 3.823 12 F -0.108 7.108 13 N -0.323 5.323 14 C 0.074 3.926 15 C -0.018 4.018 16 N -0.378 5.378 17 C -0.325 4.325 18 C 0.283 3.717 19 F -0.199 7.199 20 F -0.200 7.200 21 H 0.117 0.883 22 H 0.141 0.859 23 H 0.125 0.875 24 H 0.079 0.921 25 H 0.159 0.841 26 H 0.180 0.820 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.654 -3.128 2.345 9.496 hybrid contribution -0.192 1.206 -0.460 1.304 sum 8.461 -1.923 1.885 8.880 Atomic orbital electron populations 1.69593 1.08993 1.32670 1.31605 1.26859 0.95525 1.04101 0.90045 0.85583 0.79420 0.76632 0.80126 1.17856 1.18829 1.18299 1.19684 0.91448 0.96125 1.38751 0.90272 1.17616 0.93240 0.89590 0.87547 1.21640 0.94095 1.08563 1.10402 1.17879 0.87709 0.87206 0.89489 1.91498 1.86028 1.63437 1.69789 1.66708 1.39831 1.07968 1.17830 1.20568 0.90778 0.91451 0.89760 1.20691 0.96594 0.87390 0.97119 1.58616 1.63121 1.09300 1.06761 1.21099 0.95132 1.05761 1.10479 1.20327 0.85738 0.85983 0.79666 1.92934 1.83484 1.85051 1.58421 1.92910 1.72755 1.74167 1.80130 0.88297 0.85891 0.87474 0.92066 0.84133 0.82041 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.13 13.92 21.84 0.30 -40.83 15 2 C 0.06 2.84 5.48 85.29 0.47 3.30 15 3 Si 0.96 40.92 24.43 68.60 1.68 42.60 15 4 H -0.25 -10.28 6.66 99.48 0.66 -9.62 15 5 H -0.26 -10.23 7.11 99.48 0.71 -9.53 15 6 H -0.26 -11.60 6.68 99.48 0.66 -10.94 15 7 C -0.43 -23.07 8.29 23.52 0.19 -22.88 15 8 H 0.08 4.61 6.71 -2.91 -0.02 4.59 15 9 C 0.13 6.38 5.15 -21.10 -0.11 6.27 15 10 C -0.32 -15.45 7.11 22.89 0.16 -15.29 15 11 C 0.33 14.75 8.40 84.59 0.71 15.46 15 12 F -0.13 -5.43 17.28 44.97 0.78 -4.65 15 13 N -0.60 -25.54 10.26 -185.49 -1.90 -27.45 15 14 C 0.21 8.10 6.28 42.39 0.27 8.37 15 15 C 0.11 3.02 6.26 85.56 0.54 3.56 15 16 N -0.84 -19.71 9.61 -190.00 -1.83 -21.54 15 17 C -0.32 -13.96 5.44 -19.30 -0.10 -14.06 15 18 C 0.34 13.32 4.78 71.23 0.34 13.66 15 19 F -0.22 -9.48 16.35 44.97 0.74 -8.75 15 20 F -0.22 -9.60 16.17 44.97 0.73 -8.87 15 21 H 0.31 13.76 8.29 -92.71 -0.77 13.00 15 22 H 0.12 5.77 4.44 -2.91 -0.01 5.75 15 23 H 0.11 2.40 6.38 -2.39 -0.02 2.39 15 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.35 8.47 8.98 -89.70 -0.81 7.66 15 26 H 0.36 5.78 9.08 -89.69 -0.81 4.96 15 27 H 0.15 4.43 5.58 -2.38 -0.01 4.42 15 Total: -1.00 -59.46 243.26 2.52 -56.94 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -0.44 Total: 14.17 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 2.46 Total: -1.61 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -3.42 Total: -89.81 kcal Atomic # 9 Polarization: -24.51 SS G_CDS: 2.24 Total: -22.27 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.68 Total: 42.60 kcal Total: -59.46 2.52 -56.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238588454.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.389 kcal (2) G-P(sol) polarization free energy of solvation -59.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds