Wall clock time and date at job start Mon Mar 30 2020 03:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86804 * 119.99981 * 2 1 4 4 H 1.48500 * 109.46797 * 269.99960 * 3 2 1 5 5 H 1.48500 * 109.47204 * 30.00287 * 3 2 1 6 6 H 1.48504 * 109.46846 * 150.00071 * 3 2 1 7 7 C 1.39951 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00190 * 199.68341 * 7 2 1 9 9 C 1.41287 * 119.99677 * 19.67881 * 7 2 1 10 10 C 1.41110 * 120.67810 * 36.36619 * 9 7 2 11 11 F 1.35099 * 119.83993 * 359.97438 * 10 9 7 12 12 N 1.31720 * 120.32186 * 180.28228 * 10 9 7 13 13 C 1.32086 * 121.94120 * 359.73978 * 12 10 9 14 14 C 1.38574 * 121.36466 * 0.02562 * 13 12 10 15 15 C 1.50702 * 120.25233 * 180.02562 * 14 13 12 16 16 F 1.39904 * 109.47206 * 119.97481 * 15 14 13 17 17 F 1.39896 * 109.47162 * 239.97834 * 15 14 13 18 18 C 1.38062 * 119.49880 * 359.97438 * 14 13 12 19 19 C 1.50701 * 120.88760 * 179.97438 * 18 14 13 20 20 N 1.46899 * 109.46995 * 89.99832 * 19 18 14 21 21 H 0.96999 * 119.99911 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.32337 * 179.97438 * 13 12 10 23 23 H 1.08995 * 109.46898 * 359.97438 * 15 14 13 24 24 H 1.08996 * 109.47046 * 329.99998 * 19 18 14 25 25 H 1.09001 * 109.47232 * 210.00011 * 19 18 14 26 26 H 1.00895 * 111.00545 * 300.00265 * 20 19 18 27 27 H 1.00910 * 110.99886 * 63.95839 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4399 2.6527 0.7001 6 1 3.5400 1.4401 0.7001 7 6 2.0082 -1.2120 -0.0005 8 1 3.0408 -1.2395 0.3145 9 6 1.3636 -2.3996 -0.4131 10 6 0.4234 -2.3804 -1.4652 11 9 0.1335 -1.2162 -2.0865 12 7 -0.1775 -3.4908 -1.8405 13 6 0.0735 -4.6512 -1.2616 14 6 0.9865 -4.7573 -0.2245 15 6 1.2542 -6.0941 0.4176 16 9 2.6063 -6.4209 0.2684 17 9 0.9375 -6.0294 1.7787 18 6 1.6500 -3.6292 0.2152 19 6 2.6487 -3.7086 1.3410 20 7 3.9853 -3.9731 0.7919 21 1 -0.4850 0.8400 0.0004 22 1 -0.4440 -5.5355 -1.6029 23 1 0.6410 -6.8569 -0.0621 24 1 2.3685 -4.5146 2.0191 25 1 2.6595 -2.7638 1.8844 26 1 4.0015 -4.8442 0.2831 27 1 4.2951 -3.2088 0.2103 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238597549.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:05 Heat of formation + Delta-G solvation = -122.719267 kcal Electronic energy + Delta-G solvation = -18298.282774 eV Core-core repulsion = 14833.758469 eV Total energy + Delta-G solvation = -3464.524305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.61887 -47.28653 -46.55699 -38.78184 -34.76344 -33.88147 -31.18961 -30.47038 -26.28837 -25.32124 -24.15815 -21.57345 -20.46560 -17.93138 -17.52110 -16.79735 -16.28063 -16.15522 -15.33757 -15.21903 -14.99752 -14.39307 -13.58568 -13.45904 -13.26640 -13.05595 -12.91765 -12.40310 -12.36598 -11.87331 -11.76356 -11.68500 -11.42986 -11.11707 -10.93156 -10.62329 -10.04287 -9.43134 -8.94951 -8.50253 -8.01396 -7.70076 -7.11516 -4.78114 2.01947 2.33871 2.95667 3.00157 3.01053 3.75625 4.20742 4.29008 4.66579 4.95763 5.02754 5.14244 5.39442 5.64506 5.71104 5.81269 6.20855 6.41040 6.65161 6.79323 6.91934 6.98071 7.20877 7.60447 7.73352 7.95162 8.07412 8.30213 8.44271 8.96907 9.87629 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.009347 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.809519 B = 2994.827732 C = 3581.741194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.445 4.445 8 H 0.094 0.906 9 C 0.055 3.945 10 C 0.251 3.749 11 F -0.114 7.114 12 N -0.503 5.503 13 C 0.024 3.976 14 C -0.196 4.196 15 C 0.321 3.679 16 F -0.204 7.204 17 F -0.203 7.203 18 C -0.145 4.145 19 C 0.109 3.891 20 N -0.842 5.842 21 H 0.291 0.709 22 H 0.136 0.864 23 H 0.110 0.890 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.337 0.663 27 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 -4.991 0.519 5.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.473 4.473 8 H 0.112 0.888 9 C 0.049 3.951 10 C 0.091 3.909 11 F -0.093 7.093 12 N -0.216 5.216 13 C -0.131 4.131 14 C -0.200 4.200 15 C 0.266 3.734 16 F -0.185 7.185 17 F -0.184 7.184 18 C -0.154 4.154 19 C -0.021 4.021 20 N -0.370 5.370 21 H 0.102 0.898 22 H 0.153 0.847 23 H 0.127 0.873 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.151 0.849 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.871 -4.798 0.669 5.194 hybrid contribution 0.103 1.009 -0.386 1.085 sum 1.975 -3.789 0.283 4.282 Atomic orbital electron populations 1.69739 1.08014 1.30847 1.30107 1.25939 0.94766 1.01839 0.92297 0.86124 0.80400 0.79688 0.79682 1.18889 1.20028 1.18204 1.19411 0.99193 0.90572 1.38171 0.88839 1.18031 0.92493 0.93568 0.91025 1.18530 0.99057 0.80498 0.92772 1.91462 1.92338 1.44383 1.81113 1.66431 1.25668 0.98748 1.30761 1.21142 1.00868 0.93860 0.97270 1.20707 1.03446 0.93957 1.01877 1.20240 0.78540 0.96495 0.78078 1.92900 1.36405 1.93658 1.95532 1.92944 1.92510 1.97487 1.35464 1.20727 1.02398 0.92161 1.00105 1.20685 0.85134 1.02536 0.93737 1.59226 1.25269 1.07975 1.44553 0.89841 0.84658 0.87278 0.90956 0.89684 0.84939 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.29 11.10 55.55 0.62 -18.67 15 2 C 0.07 1.77 4.54 -17.33 -0.08 1.69 15 3 Si 0.92 17.90 29.60 -169.99 -5.03 12.86 15 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 15 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 7 C -0.45 -10.81 7.82 -37.78 -0.30 -11.10 15 8 H 0.09 2.13 7.22 -52.49 -0.38 1.76 15 9 C 0.06 1.38 5.41 -106.59 -0.58 0.80 15 10 C 0.25 6.53 7.84 -16.51 -0.13 6.40 15 11 F -0.11 -3.05 14.28 2.25 0.03 -3.02 15 12 N -0.50 -12.30 10.35 -12.85 -0.13 -12.43 15 13 C 0.02 0.49 10.82 -17.32 -0.19 0.31 15 14 C -0.20 -3.95 5.38 -104.56 -0.56 -4.51 15 15 C 0.32 5.24 4.96 36.01 0.18 5.42 15 16 F -0.20 -3.36 14.50 2.25 0.03 -3.33 15 17 F -0.20 -3.57 15.44 2.25 0.03 -3.53 15 18 C -0.14 -3.21 5.47 -103.63 -0.57 -3.77 15 19 C 0.11 2.19 5.68 -4.98 -0.03 2.17 15 20 N -0.84 -15.31 9.60 -11.41 -0.11 -15.42 15 21 H 0.29 6.70 8.30 -40.82 -0.34 6.36 15 22 H 0.14 2.28 7.94 -52.49 -0.42 1.86 15 23 H 0.11 1.35 7.88 -51.93 -0.41 0.94 15 24 H 0.07 1.43 5.69 -51.93 -0.30 1.13 15 25 H 0.08 1.79 7.07 -51.93 -0.37 1.42 15 26 H 0.34 5.94 6.76 -39.29 -0.27 5.67 15 27 H 0.34 6.05 8.83 -39.29 -0.35 5.71 15 LS Contribution 243.78 15.07 3.67 3.67 Total: -1.00 -27.01 243.78 -4.74 -31.75 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -1.61 Total: 10.72 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.25 Total: -2.60 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.37 Total: -46.52 kcal Atomic # 9 Polarization: -9.98 SS G_CDS: 0.10 Total: -9.88 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.01 -4.74 -31.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238597549.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.967 kcal (2) G-P(sol) polarization free energy of solvation -27.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds