Wall clock time and date at job start Mon Mar 30 2020 03:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86804 * 119.99981 * 2 1 4 4 H 1.48500 * 109.46797 * 269.99960 * 3 2 1 5 5 H 1.48500 * 109.47204 * 30.00287 * 3 2 1 6 6 H 1.48504 * 109.46846 * 150.00071 * 3 2 1 7 7 C 1.39951 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00190 * 199.68341 * 7 2 1 9 9 C 1.41287 * 119.99677 * 19.67881 * 7 2 1 10 10 C 1.41110 * 120.67810 * 36.36619 * 9 7 2 11 11 F 1.35099 * 119.83993 * 359.97438 * 10 9 7 12 12 N 1.31720 * 120.32186 * 180.28228 * 10 9 7 13 13 C 1.32086 * 121.94120 * 359.73978 * 12 10 9 14 14 C 1.38574 * 121.36466 * 0.02562 * 13 12 10 15 15 C 1.50702 * 120.25233 * 180.02562 * 14 13 12 16 16 F 1.39904 * 109.47206 * 119.97481 * 15 14 13 17 17 F 1.39896 * 109.47162 * 239.97834 * 15 14 13 18 18 C 1.38062 * 119.49880 * 359.97438 * 14 13 12 19 19 C 1.50701 * 120.88760 * 179.97438 * 18 14 13 20 20 N 1.46899 * 109.46995 * 89.99832 * 19 18 14 21 21 H 0.96999 * 119.99911 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.32337 * 179.97438 * 13 12 10 23 23 H 1.08995 * 109.46898 * 359.97438 * 15 14 13 24 24 H 1.08996 * 109.47046 * 329.99998 * 19 18 14 25 25 H 1.09001 * 109.47232 * 210.00011 * 19 18 14 26 26 H 1.00895 * 111.00545 * 300.00265 * 20 19 18 27 27 H 1.00910 * 110.99886 * 63.95839 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4399 2.6527 0.7001 6 1 3.5400 1.4401 0.7001 7 6 2.0082 -1.2120 -0.0005 8 1 3.0408 -1.2395 0.3145 9 6 1.3636 -2.3996 -0.4131 10 6 0.4234 -2.3804 -1.4652 11 9 0.1335 -1.2162 -2.0865 12 7 -0.1775 -3.4908 -1.8405 13 6 0.0735 -4.6512 -1.2616 14 6 0.9865 -4.7573 -0.2245 15 6 1.2542 -6.0941 0.4176 16 9 2.6063 -6.4209 0.2684 17 9 0.9375 -6.0294 1.7787 18 6 1.6500 -3.6292 0.2152 19 6 2.6487 -3.7086 1.3410 20 7 3.9853 -3.9731 0.7919 21 1 -0.4850 0.8400 0.0004 22 1 -0.4440 -5.5355 -1.6029 23 1 0.6410 -6.8569 -0.0621 24 1 2.3685 -4.5146 2.0191 25 1 2.6595 -2.7638 1.8844 26 1 4.0015 -4.8442 0.2831 27 1 4.2951 -3.2088 0.2103 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238597549.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:05 Heat of formation + Delta-G solvation = -141.413940 kcal Electronic energy + Delta-G solvation = -18299.093435 eV Core-core repulsion = 14833.758469 eV Total energy + Delta-G solvation = -3465.334966 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.93951 -49.22163 -47.87870 -40.52205 -36.46616 -35.59550 -32.80596 -32.21319 -27.99261 -26.90714 -25.79235 -23.24064 -22.18611 -19.66887 -19.01447 -18.12626 -18.06457 -17.68361 -16.94576 -16.89302 -16.57645 -16.26256 -15.15445 -14.99314 -14.82246 -14.66425 -14.25269 -14.11760 -13.91086 -13.66704 -13.45644 -13.30130 -13.11239 -12.77630 -12.44514 -12.14552 -11.60593 -11.17054 -10.67511 -10.26058 -9.62324 -9.47941 -8.87122 -6.61689 0.26313 0.59366 1.36081 1.44311 1.50158 2.13516 2.54214 2.87511 3.18477 3.26824 3.40004 3.79939 3.92861 4.04562 4.13744 4.24556 4.57532 4.76658 4.93785 5.07807 5.16741 5.24439 5.53398 5.81091 6.11847 6.20118 6.52199 6.57497 6.65715 7.19207 8.14732 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.009347 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.809519 B = 2994.827732 C = 3581.741194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.247 1.247 7 C -0.470 4.470 8 H 0.100 0.900 9 C 0.031 3.969 10 C 0.205 3.795 11 F -0.131 7.131 12 N -0.523 5.523 13 C 0.032 3.968 14 C -0.199 4.199 15 C 0.324 3.676 16 F -0.203 7.203 17 F -0.209 7.209 18 C -0.144 4.144 19 C 0.118 3.882 20 N -0.832 5.832 21 H 0.293 0.707 22 H 0.183 0.817 23 H 0.165 0.835 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.343 0.657 27 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -6.565 0.902 7.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.170 1.170 7 C -0.498 4.498 8 H 0.117 0.883 9 C 0.025 3.975 10 C 0.048 3.952 11 F -0.111 7.111 12 N -0.237 5.237 13 C -0.124 4.124 14 C -0.203 4.203 15 C 0.270 3.730 16 F -0.185 7.185 17 F -0.191 7.191 18 C -0.154 4.154 19 C -0.013 4.013 20 N -0.361 5.361 21 H 0.104 0.896 22 H 0.200 0.800 23 H 0.182 0.818 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.157 0.843 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.558 -6.366 1.053 6.941 hybrid contribution -0.123 1.280 -0.499 1.380 sum 2.435 -5.086 0.554 5.666 Atomic orbital electron populations 1.69800 1.09561 1.31712 1.31986 1.26790 0.95304 1.04955 0.91309 0.85145 0.79446 0.75588 0.79433 1.19173 1.19354 1.17049 1.19633 0.99576 0.91239 1.39336 0.88250 1.18332 0.92958 0.94992 0.91233 1.18819 1.01326 0.80671 0.94385 1.91390 1.92695 1.45439 1.81531 1.66463 1.26228 0.99410 1.31593 1.22014 1.00055 0.94063 0.96306 1.21184 1.02146 0.95587 1.01409 1.20545 0.79280 0.95456 0.77674 1.92902 1.36683 1.93401 1.95477 1.92937 1.92558 1.97442 1.36132 1.21159 1.02182 0.92097 0.99963 1.20600 0.85499 1.02079 0.93114 1.59198 1.23791 1.08344 1.44725 0.89587 0.79990 0.81820 0.90258 0.91055 0.84263 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.03 11.10 21.83 0.24 -41.79 15 2 C 0.03 1.70 4.54 85.26 0.39 2.08 15 3 Si 0.98 37.11 29.60 68.60 2.03 39.14 15 4 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 5 H -0.27 -9.75 7.11 99.48 0.71 -9.04 15 6 H -0.25 -8.77 7.11 99.48 0.71 -8.07 15 7 C -0.47 -23.23 7.82 23.44 0.18 -23.04 15 8 H 0.10 4.59 7.22 -2.91 -0.02 4.57 15 9 C 0.03 1.57 5.41 -21.14 -0.11 1.46 15 10 C 0.20 10.88 7.84 85.41 0.67 11.55 15 11 F -0.13 -7.33 14.28 44.97 0.64 -6.69 15 12 N -0.52 -25.38 10.35 -194.58 -2.01 -27.40 15 13 C 0.03 1.26 10.82 84.73 0.92 2.18 15 14 C -0.20 -7.52 5.38 -19.83 -0.11 -7.62 15 15 C 0.32 9.23 4.96 71.24 0.35 9.58 15 16 F -0.20 -5.94 14.50 44.97 0.65 -5.29 15 17 F -0.21 -6.64 15.44 44.97 0.69 -5.94 15 18 C -0.14 -6.25 5.47 -19.22 -0.11 -6.36 15 19 C 0.12 4.58 5.68 85.56 0.49 5.07 15 20 N -0.83 -28.84 9.60 -190.01 -1.82 -30.67 15 21 H 0.29 14.02 8.30 -92.71 -0.77 13.25 15 22 H 0.18 5.24 7.94 -2.91 -0.02 5.22 15 23 H 0.16 3.03 7.88 -2.39 -0.02 3.01 15 24 H 0.08 2.97 5.69 -2.39 -0.01 2.96 15 25 H 0.07 2.98 7.07 -2.39 -0.02 2.96 15 26 H 0.34 11.28 6.76 -89.70 -0.61 10.67 15 27 H 0.34 11.79 8.83 -89.69 -0.79 11.00 15 Total: -1.00 -59.54 243.78 2.95 -56.58 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.14 Total: 27.16 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 2.67 Total: -5.11 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -3.60 Total: -99.86 kcal Atomic # 9 Polarization: -19.91 SS G_CDS: 1.99 Total: -17.92 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Total: -59.54 2.95 -56.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238597549.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.830 kcal (2) G-P(sol) polarization free energy of solvation -59.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds