Wall clock time and date at job start Mon Mar 30 2020 03:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86793 * 120.00169 * 2 1 4 4 H 1.48505 * 109.47712 * 274.66690 * 3 2 1 5 5 H 1.48496 * 109.47395 * 34.66812 * 3 2 1 6 6 H 1.48497 * 109.47173 * 154.66798 * 3 2 1 7 7 C 1.39927 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00039 * 162.95135 * 7 2 1 9 9 C 1.41354 * 119.99760 * 342.95311 * 7 2 1 10 10 C 1.40751 * 120.62764 * 334.94891 * 9 7 2 11 11 N 1.31514 * 120.30528 * 179.97438 * 10 9 7 12 12 C 1.32320 * 121.79756 * 0.02562 * 11 10 9 13 13 F 1.35106 * 119.36343 * 180.02562 * 12 11 10 14 14 C 1.38959 * 121.27045 * 359.73984 * 12 11 10 15 15 C 1.50696 * 120.23479 * 180.28995 * 14 12 11 16 16 F 1.39900 * 109.47053 * 120.22226 * 15 14 12 17 17 F 1.39897 * 109.47211 * 240.22455 * 15 14 12 18 18 C 1.36894 * 119.53004 * 0.51325 * 14 12 11 19 19 C 1.50699 * 120.82255 * 179.77781 * 18 14 12 20 20 N 1.46900 * 109.47249 * 269.71757 * 19 18 14 21 21 H 0.96999 * 119.99565 * 0.02562 * 1 2 3 22 22 H 1.07996 * 119.84674 * 359.95784 * 10 9 7 23 23 H 1.09000 * 109.47074 * 0.22453 * 15 14 12 24 24 H 1.08999 * 109.46776 * 149.71760 * 19 18 14 25 25 H 1.08997 * 109.47544 * 29.72081 * 19 18 14 26 26 H 1.00907 * 111.00149 * 296.04961 * 20 19 18 27 27 H 1.00899 * 110.99926 * 60.00026 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.3915 2.1034 -1.3954 5 1 1.4929 2.6221 0.7964 6 1 3.5859 1.4136 0.5990 7 6 2.0081 -1.2118 -0.0005 8 1 3.0525 -1.2323 -0.2748 9 6 1.3478 -2.4092 0.3578 10 6 0.2138 -2.3810 1.1910 11 7 -0.3959 -3.4989 1.5200 12 6 0.0259 -4.6763 1.0882 13 9 -0.6382 -5.7938 1.4564 14 6 1.1353 -4.7852 0.2585 15 6 1.5916 -6.1376 -0.2248 16 9 1.5555 -6.1697 -1.6230 17 9 2.8992 -6.3727 0.2134 18 6 1.8136 -3.6555 -0.1128 19 6 3.0234 -3.7402 -1.0074 20 7 4.2317 -3.8841 -0.1846 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1572 -1.4371 1.5620 23 1 0.9310 -6.9077 0.1734 24 1 3.0971 -2.8321 -1.6056 25 1 2.9280 -4.6029 -1.6668 26 1 4.3777 -3.0671 0.3895 27 1 4.1876 -4.7193 0.3798 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238598074.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:02 Heat of formation + Delta-G solvation = -145.475219 kcal Electronic energy + Delta-G solvation = -18202.963393 eV Core-core repulsion = 14737.452317 eV Total energy + Delta-G solvation = -3465.511077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.15568 -49.58389 -48.02019 -40.63986 -36.32271 -35.94619 -32.98307 -32.01657 -27.86208 -27.24999 -25.82765 -23.21210 -22.35498 -19.61809 -19.28339 -18.31040 -18.21591 -17.79726 -17.02034 -16.80681 -16.64380 -16.57278 -15.25749 -15.11918 -14.90899 -14.59247 -14.39123 -14.28014 -14.02173 -13.71688 -13.59977 -13.28357 -13.00751 -12.77911 -12.49456 -12.13811 -11.62805 -11.28657 -10.77685 -10.35882 -9.68556 -9.59499 -8.91825 -6.58685 0.23342 0.54448 1.41897 1.47670 1.58373 2.14073 2.45837 2.69607 3.09318 3.15781 3.28267 3.66416 3.87501 4.03319 4.12413 4.14885 4.56816 4.79238 4.91421 5.02203 5.10076 5.24915 5.56331 5.80772 6.16116 6.20426 6.42675 6.54122 6.61419 7.23719 8.06843 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027376 B = 0.009060 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.541550 B = 3089.906180 C = 3795.133828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.037 3.963 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.439 4.439 8 H 0.103 0.897 9 C 0.041 3.959 10 C 0.058 3.942 11 N -0.511 5.511 12 C 0.145 3.855 13 F -0.139 7.139 14 C -0.190 4.190 15 C 0.324 3.676 16 F -0.201 7.201 17 F -0.196 7.196 18 C -0.159 4.159 19 C 0.117 3.883 20 N -0.832 5.832 21 H 0.301 0.699 22 H 0.154 0.846 23 H 0.141 0.859 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.341 0.659 27 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.507 -2.124 -0.584 5.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.183 4.183 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.467 4.467 8 H 0.121 0.879 9 C 0.035 3.965 10 C -0.106 4.106 11 N -0.224 5.224 12 C -0.006 4.006 13 F -0.119 7.119 14 C -0.196 4.196 15 C 0.270 3.730 16 F -0.183 7.183 17 F -0.177 7.177 18 C -0.168 4.168 19 C -0.014 4.014 20 N -0.360 5.360 21 H 0.112 0.888 22 H 0.171 0.829 23 H 0.158 0.842 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.154 0.846 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.989 -2.121 -0.792 4.587 hybrid contribution -0.376 0.522 0.399 0.757 sum 3.613 -1.599 -0.393 3.971 Atomic orbital electron populations 1.69779 1.09398 1.32225 1.31264 1.26976 0.95475 1.05196 0.90628 0.85008 0.79345 0.74945 0.79584 1.18691 1.19151 1.17373 1.19937 0.98797 0.90598 1.37323 0.87908 1.18694 0.93100 0.93537 0.91126 1.22842 0.96525 0.93150 0.98099 1.66569 1.32480 0.98573 1.24736 1.17364 0.95116 0.82251 1.05822 1.91400 1.81000 1.48109 1.91396 1.20357 0.98783 0.96521 1.03907 1.20247 0.81293 0.96015 0.75485 1.92937 1.96459 1.97443 1.31418 1.92903 1.40314 1.95276 1.89221 1.20825 1.01553 0.91723 1.02699 1.20630 0.84076 1.02637 0.94016 1.59212 1.36616 1.08603 1.31615 0.88785 0.82852 0.84164 0.90083 0.90683 0.84645 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.45 10.97 21.82 0.24 -36.21 15 2 C 0.04 1.55 5.16 85.25 0.44 1.99 15 3 Si 0.99 32.04 29.59 68.60 2.03 34.07 15 4 H -0.26 -8.32 7.11 99.48 0.71 -7.61 15 5 H -0.27 -8.40 7.11 99.48 0.71 -7.69 15 6 H -0.25 -7.85 7.11 99.48 0.71 -7.15 15 7 C -0.44 -19.57 8.21 23.45 0.19 -19.38 15 8 H 0.10 4.26 6.79 -2.91 -0.02 4.24 15 9 C 0.04 1.95 5.58 -21.19 -0.12 1.83 15 10 C 0.06 2.92 9.89 85.36 0.84 3.76 15 11 N -0.51 -25.92 10.36 -194.55 -2.02 -27.94 15 12 C 0.15 6.79 8.37 84.79 0.71 7.50 15 13 F -0.14 -5.95 16.20 44.97 0.73 -5.22 15 14 C -0.19 -8.10 5.36 -20.01 -0.11 -8.21 15 15 C 0.32 11.23 4.93 71.23 0.35 11.58 15 16 F -0.20 -7.15 15.41 44.97 0.69 -6.46 15 17 F -0.20 -6.53 14.46 44.97 0.65 -5.88 15 18 C -0.16 -6.95 5.43 -19.47 -0.11 -7.05 15 19 C 0.12 4.48 5.61 85.56 0.48 4.96 15 20 N -0.83 -28.49 9.60 -190.01 -1.82 -30.32 15 21 H 0.30 12.22 8.30 -92.71 -0.77 11.45 15 22 H 0.15 7.82 6.19 -2.91 -0.02 7.81 15 23 H 0.14 4.14 7.12 -2.39 -0.02 4.12 15 24 H 0.08 3.16 6.88 -2.39 -0.02 3.15 15 25 H 0.07 2.84 5.62 -2.39 -0.01 2.82 15 26 H 0.34 11.42 8.91 -89.69 -0.80 10.63 15 27 H 0.34 11.47 6.76 -89.69 -0.61 10.87 15 Total: -1.00 -51.39 243.02 3.05 -48.34 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.14 Total: 32.63 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 2.69 Total: -3.02 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -3.60 Total: -94.46 kcal Atomic # 9 Polarization: -19.63 SS G_CDS: 2.07 Total: -17.56 kcal Atomic # 14 Polarization: 32.04 SS G_CDS: 2.03 Total: 34.07 kcal Total: -51.39 3.05 -48.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238598074.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.138 kcal (2) G-P(sol) polarization free energy of solvation -51.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds