Wall clock time and date at job start Mon Mar 30 2020 03:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 119.99862 * 2 1 4 4 H 1.48498 * 109.47286 * 240.00183 * 3 2 1 5 5 H 1.48501 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47169 * 120.00330 * 3 2 1 7 7 C 1.39950 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99747 * 168.33387 * 7 2 1 9 9 C 1.41409 * 119.99743 * 348.34057 * 7 2 1 10 10 C 1.40760 * 120.64692 * 329.65887 * 9 7 2 11 11 N 1.31466 * 120.45484 * 180.02562 * 10 9 7 12 12 C 1.32070 * 122.00733 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.35743 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.47107 * 90.00297 * 13 12 11 15 15 C 1.38826 * 121.27948 * 0.26994 * 12 11 10 16 16 F 1.35100 * 120.31236 * 179.70318 * 15 12 11 17 17 C 1.38255 * 119.37371 * 359.45707 * 15 12 11 18 18 C 1.50704 * 120.90906 * 180.25732 * 17 15 12 19 19 F 1.39894 * 109.47140 * 20.01438 * 18 17 15 20 20 F 1.39906 * 109.46894 * 140.01230 * 18 17 15 21 21 H 0.97002 * 120.00224 * 359.97438 * 1 2 3 22 22 H 1.07998 * 119.77459 * 0.02562 * 10 9 7 23 23 H 1.08995 * 109.47099 * 329.99388 * 13 12 11 24 24 H 1.09004 * 109.46812 * 209.99869 * 13 12 11 25 25 H 1.00898 * 111.00272 * 56.04008 * 14 13 12 26 26 H 1.00901 * 110.99725 * 179.97438 * 14 13 12 27 27 H 1.08993 * 109.47310 * 260.00798 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0713 -1.2214 -0.1897 9 6 1.3229 -2.4241 0.2464 10 6 0.1865 -2.4497 1.0767 11 7 -0.4473 -3.5788 1.3041 12 6 -0.0531 -4.7220 0.7732 13 6 -0.8241 -5.9813 1.0747 14 7 -1.8835 -6.1586 0.0726 15 6 1.0612 -4.7872 -0.0523 16 9 1.4505 -5.9682 -0.5802 17 6 1.7656 -3.6312 -0.3331 18 6 2.9767 -3.6611 -1.2294 19 9 2.9481 -4.8193 -2.0135 20 9 2.9701 -2.5353 -2.0601 21 1 -0.4850 0.8400 0.0004 22 1 -0.1672 -1.5355 1.5300 23 1 -1.2706 -5.9055 2.0661 24 1 -0.1489 -6.8366 1.0448 25 1 -1.5005 -6.1671 -0.8609 26 1 -2.4149 -6.9972 0.2527 27 1 3.8802 -3.6573 -0.6197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238601772.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:57 Heat of formation + Delta-G solvation = -129.635409 kcal Electronic energy + Delta-G solvation = -18102.336163 eV Core-core repulsion = 14637.511952 eV Total energy + Delta-G solvation = -3464.824211 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.34412 -47.80796 -46.07083 -38.58449 -34.86208 -33.52386 -31.80982 -29.52477 -26.93654 -25.34032 -23.65889 -21.63230 -20.43656 -17.99491 -16.94700 -16.69611 -16.22807 -15.91829 -15.26945 -15.20632 -15.03868 -14.67176 -13.82584 -13.50820 -13.19148 -12.92025 -12.73341 -12.47806 -12.15568 -12.00101 -11.82410 -11.40339 -11.37164 -11.06032 -10.76707 -10.49584 -10.39017 -9.61767 -8.51054 -8.32858 -8.17961 -7.63148 -7.15729 -4.83168 2.25364 2.31363 2.91949 2.94589 2.98409 3.68917 4.28385 4.62487 4.98666 5.12410 5.23188 5.35993 5.43177 5.58107 5.80907 5.89918 6.20117 6.41353 6.43450 6.77713 6.94981 6.96067 7.34590 7.56561 7.68311 7.86282 7.97334 8.28967 8.36493 9.37562 9.79932 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.009667 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.030103 B = 2895.695621 C = 3815.275101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.074 3.926 3 Si 0.923 3.077 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.423 4.423 8 H 0.090 0.910 9 C 0.106 3.894 10 C 0.060 3.940 11 N -0.428 5.428 12 C -0.048 4.048 13 C 0.137 3.863 14 N -0.842 5.842 15 C 0.116 3.884 16 F -0.148 7.148 17 C -0.304 4.304 18 C 0.337 3.663 19 F -0.212 7.212 20 F -0.193 7.193 21 H 0.292 0.708 22 H 0.159 0.841 23 H 0.077 0.923 24 H 0.026 0.974 25 H 0.337 0.663 26 H 0.332 0.668 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 -2.961 0.613 4.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.148 4.148 3 Si 0.746 3.254 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.452 4.452 8 H 0.108 0.892 9 C 0.100 3.900 10 C -0.110 4.110 11 N -0.136 5.136 12 C -0.180 4.180 13 C 0.007 3.993 14 N -0.371 5.371 15 C 0.094 3.906 16 F -0.127 7.127 17 C -0.312 4.312 18 C 0.284 3.716 19 F -0.193 7.193 20 F -0.175 7.175 21 H 0.104 0.896 22 H 0.176 0.824 23 H 0.096 0.904 24 H 0.044 0.956 25 H 0.150 0.850 26 H 0.143 0.857 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.827 -2.272 1.350 3.213 hybrid contribution 1.606 -0.275 -1.178 2.010 sum 3.433 -2.547 0.173 4.278 Atomic orbital electron populations 1.69719 1.07744 1.30823 1.31451 1.26056 0.94985 1.02018 0.91754 0.86094 0.80034 0.78860 0.80430 1.18436 1.19840 1.18350 1.19675 0.96705 0.89848 1.38932 0.89178 1.18126 0.92372 0.90990 0.88534 1.23093 0.95169 0.94580 0.98126 1.67008 1.28266 0.97912 1.20410 1.20097 0.97117 0.94729 1.06107 1.20140 0.91059 0.92159 0.95981 1.58725 1.28017 1.44350 1.06014 1.18067 0.95949 0.80045 0.96516 1.91387 1.90725 1.45545 1.84998 1.20443 1.05112 0.95078 1.10584 1.19728 0.98249 0.70576 0.83084 1.92935 1.97900 1.50788 1.77727 1.92987 1.97764 1.52347 1.74357 0.89622 0.82361 0.90426 0.95578 0.85046 0.85659 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.30 11.03 55.55 0.61 -17.69 15 2 C 0.07 1.66 5.23 -17.34 -0.09 1.57 15 3 Si 0.92 16.93 29.57 -169.99 -5.03 11.90 15 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 6 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 7 C -0.42 -10.07 7.41 -37.73 -0.28 -10.35 15 8 H 0.09 2.03 6.87 -52.49 -0.36 1.67 15 9 C 0.11 2.63 5.51 -106.68 -0.59 2.04 15 10 C 0.06 1.50 9.85 -16.76 -0.16 1.33 15 11 N -0.43 -10.56 10.24 -8.73 -0.09 -10.65 15 12 C -0.05 -1.11 6.31 -82.27 -0.52 -1.63 15 13 C 0.14 2.60 6.89 -4.98 -0.03 2.57 15 14 N -0.84 -14.67 9.61 -11.41 -0.11 -14.78 15 15 C 0.12 2.70 7.12 -39.36 -0.28 2.42 15 16 F -0.15 -3.21 14.43 2.25 0.03 -3.17 15 17 C -0.30 -7.22 5.80 -103.56 -0.60 -7.82 15 18 C 0.34 7.12 5.18 36.01 0.19 7.31 15 19 F -0.21 -4.51 15.24 2.25 0.03 -4.48 15 20 F -0.19 -4.35 15.04 2.25 0.03 -4.31 15 21 H 0.29 6.24 8.30 -40.82 -0.34 5.91 15 22 H 0.16 3.96 6.40 -52.49 -0.34 3.63 15 23 H 0.08 1.43 8.14 -51.93 -0.42 1.00 15 24 H 0.03 0.46 7.60 -51.93 -0.39 0.06 15 25 H 0.34 5.92 8.99 -39.29 -0.35 5.56 15 26 H 0.33 4.57 9.08 -39.29 -0.36 4.21 15 27 H 0.10 1.74 8.14 -51.93 -0.42 1.32 15 LS Contribution 249.29 15.07 3.76 3.76 Total: -1.00 -26.85 249.29 -4.91 -31.76 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -1.78 Total: 10.22 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.37 Total: -2.56 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.41 Total: -43.12 kcal Atomic # 9 Polarization: -12.06 SS G_CDS: 0.10 Total: -11.96 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -26.85 -4.91 -31.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601772.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.875 kcal (2) G-P(sol) polarization free energy of solvation -26.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds