Wall clock time and date at job start Mon Mar 30 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48495 * 109.47186 * 273.73073 * 3 2 1 5 5 H 1.48493 * 109.47353 * 33.73198 * 3 2 1 6 6 H 1.48503 * 109.46689 * 153.73286 * 3 2 1 7 7 C 1.39939 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00014 * 344.02976 * 7 2 1 9 9 C 1.41327 * 120.00303 * 164.02588 * 7 2 1 10 10 C 1.40699 * 120.68293 * 331.71114 * 9 7 2 11 11 N 1.31478 * 120.42082 * 180.02562 * 10 9 7 12 12 C 1.32159 * 122.05889 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.31070 * 180.02562 * 12 11 10 14 14 N 1.46903 * 109.46721 * 263.67878 * 13 12 11 15 15 C 1.38373 * 121.36687 * 359.97438 * 12 11 10 16 16 C 1.50703 * 120.30082 * 179.97438 * 15 12 11 17 17 F 1.39904 * 109.46887 * 230.76492 * 16 15 12 18 18 F 1.39897 * 109.47302 * 110.76739 * 16 15 12 19 19 C 1.38433 * 119.39683 * 0.25674 * 15 12 11 20 20 F 1.35091 * 120.93761 * 179.74284 * 19 15 12 21 21 H 0.97003 * 120.00240 * 0.02562 * 1 2 3 22 22 H 1.07995 * 119.79159 * 0.02562 * 10 9 7 23 23 H 1.08992 * 109.47716 * 23.68250 * 13 12 11 24 24 H 1.09001 * 109.46688 * 143.68504 * 13 12 11 25 25 H 1.00906 * 110.99474 * 180.02562 * 14 13 12 26 26 H 1.00899 * 111.00240 * 303.95426 * 14 13 12 27 27 H 1.09005 * 109.47263 * 350.76338 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4110 2.0920 -1.3971 5 1 1.4816 2.6286 0.7774 6 1 3.5772 1.4186 0.6196 7 6 2.0081 -1.2119 0.0005 8 1 1.4994 -2.1291 0.2583 9 6 3.3805 -1.2358 -0.3363 10 6 3.9232 -0.2719 -1.2057 11 7 5.2006 -0.2992 -1.5160 12 6 6.0199 -1.2176 -1.0345 13 6 7.4736 -1.1903 -1.4310 14 7 7.6935 -2.1169 -2.5495 15 6 5.5709 -2.2030 -0.1730 16 6 6.5262 -3.2389 0.3613 17 9 5.9915 -4.5156 0.1572 18 9 6.7234 -3.0294 1.7304 19 6 4.2350 -2.2321 0.1888 20 9 3.7622 -3.1832 1.0236 21 1 -0.4850 0.8400 -0.0004 22 1 3.2866 0.4953 -1.6209 23 1 7.7481 -0.1806 -1.7362 24 1 8.0873 -1.4929 -0.5825 25 1 8.6616 -2.1170 -2.8338 26 1 7.3862 -3.0484 -2.3132 27 1 7.4800 -3.1569 -0.1600 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238601906.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:52 Heat of formation + Delta-G solvation = -123.997666 kcal Electronic energy + Delta-G solvation = -18104.802339 eV Core-core repulsion = 14640.222598 eV Total energy + Delta-G solvation = -3464.579740 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.71825 -47.70618 -46.61034 -39.06892 -35.15567 -33.76995 -31.66932 -31.05365 -26.76676 -25.99727 -23.59801 -21.86843 -20.88423 -18.09194 -17.64060 -16.95139 -16.82715 -16.11398 -15.78921 -15.32038 -14.96948 -14.69188 -14.27587 -13.96659 -13.48957 -13.06160 -12.99682 -12.87732 -12.69661 -12.39579 -12.23221 -11.92804 -11.40932 -11.17567 -11.07112 -10.39362 -10.13462 -9.61249 -8.70495 -8.60950 -8.55009 -8.15620 -7.34731 -4.88204 1.74416 2.10860 2.89518 2.99399 3.07673 3.66893 4.01242 4.08904 4.43853 4.76871 4.86621 4.96770 5.06518 5.14072 5.43001 5.53905 5.81694 5.93102 6.28418 6.39972 6.59297 6.80031 7.03559 7.22953 7.39262 7.56785 7.87040 8.00037 8.24396 9.02386 9.64455 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.026764 B = 0.009587 C = 0.007868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.913114 B = 2919.934733 C = 3557.821910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.081 3.919 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.243 1.243 7 C -0.405 4.405 8 H 0.103 0.897 9 C 0.012 3.988 10 C 0.002 3.998 11 N -0.434 5.434 12 C 0.029 3.971 13 C 0.127 3.873 14 N -0.843 5.843 15 C -0.203 4.203 16 C 0.318 3.682 17 F -0.200 7.200 18 F -0.202 7.202 19 C 0.060 3.940 20 F -0.135 7.135 21 H 0.295 0.705 22 H 0.144 0.856 23 H 0.087 0.913 24 H 0.028 0.972 25 H 0.337 0.663 26 H 0.336 0.664 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.805 -0.867 -0.602 9.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.183 1.183 5 H -0.207 1.207 6 H -0.166 1.166 7 C -0.432 4.432 8 H 0.121 0.879 9 C 0.006 3.994 10 C -0.161 4.161 11 N -0.142 5.142 12 C -0.109 4.109 13 C -0.003 4.003 14 N -0.374 5.374 15 C -0.208 4.208 16 C 0.263 3.737 17 F -0.181 7.181 18 F -0.183 7.183 19 C 0.034 3.966 20 F -0.113 7.113 21 H 0.106 0.894 22 H 0.161 0.839 23 H 0.106 0.894 24 H 0.046 0.954 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.323 0.243 -1.472 9.441 hybrid contribution 0.187 -0.747 1.501 1.687 sum 9.510 -0.504 0.029 9.523 Atomic orbital electron populations 1.69634 1.08129 1.31387 1.30592 1.26264 0.95023 1.02039 0.90945 0.86320 0.81094 0.79070 0.79896 1.18344 1.20716 1.16643 1.19513 0.91318 0.96768 1.35641 0.87946 1.18671 0.94527 0.92521 0.93690 1.22468 0.91331 1.01828 1.00470 1.66829 1.04324 1.22157 1.20855 1.19568 0.95427 0.95001 1.00928 1.20335 0.90918 0.98116 0.90956 1.58671 1.25545 1.12551 1.40589 1.20711 0.93752 1.00887 1.05428 1.20295 0.96348 0.78733 0.78275 1.92998 1.88679 1.41720 1.94704 1.92990 1.95992 1.94853 1.34511 1.17584 0.90563 0.92590 0.95838 1.91395 1.88908 1.62003 1.69036 0.89378 0.83897 0.89437 0.95379 0.84990 0.85093 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.03 13.93 55.55 0.77 -18.25 15 2 C 0.08 1.96 5.45 -17.34 -0.09 1.87 15 3 Si 0.91 19.20 24.43 -169.99 -4.15 15.05 15 4 H -0.26 -5.20 6.65 56.52 0.38 -4.82 15 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.24 -5.39 6.75 56.52 0.38 -5.00 15 7 C -0.41 -10.49 9.36 -37.77 -0.35 -10.84 15 8 H 0.10 2.81 8.00 -52.49 -0.42 2.39 15 9 C 0.01 0.30 5.18 -106.60 -0.55 -0.25 15 10 C 0.00 0.05 8.30 -16.77 -0.14 -0.09 15 11 N -0.43 -9.89 10.24 -8.83 -0.09 -9.98 15 12 C 0.03 0.59 6.30 -82.40 -0.52 0.07 15 13 C 0.13 1.98 6.23 -4.97 -0.03 1.95 15 14 N -0.84 -11.58 9.60 -11.41 -0.11 -11.69 15 15 C -0.20 -4.31 5.41 -104.50 -0.57 -4.87 15 16 C 0.32 5.65 4.77 36.01 0.17 5.82 15 17 F -0.20 -3.76 16.63 2.25 0.04 -3.72 15 18 F -0.20 -3.80 17.32 2.25 0.04 -3.76 15 19 C 0.06 1.46 7.21 -38.32 -0.28 1.19 15 20 F -0.13 -3.31 15.99 2.25 0.04 -3.28 15 21 H 0.30 6.43 8.30 -40.82 -0.34 6.09 15 22 H 0.14 3.28 4.33 -52.49 -0.23 3.05 15 23 H 0.09 1.35 8.14 -51.93 -0.42 0.92 15 24 H 0.03 0.38 6.61 -51.93 -0.34 0.03 15 25 H 0.34 3.47 9.08 -39.29 -0.36 3.12 15 26 H 0.34 4.48 8.14 -39.29 -0.32 4.16 15 27 H 0.11 1.47 5.17 -51.93 -0.27 1.20 15 LS Contribution 244.62 15.07 3.69 3.69 Total: -1.00 -27.50 244.62 -3.68 -31.18 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -1.54 Total: 5.94 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.36 Total: -5.17 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.57 Total: -39.93 kcal Atomic # 9 Polarization: -10.87 SS G_CDS: 0.11 Total: -10.76 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.15 Total: 15.05 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.50 -3.68 -31.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601906.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.818 kcal (2) G-P(sol) polarization free energy of solvation -27.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds