Wall clock time and date at job start Mon Mar 30 2020 03:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48505 * 109.47012 * 270.00088 * 3 2 1 5 5 H 1.48501 * 109.47189 * 30.00006 * 3 2 1 6 6 H 1.48500 * 109.47664 * 150.00244 * 3 2 1 7 7 C 1.39946 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00024 * 161.54850 * 7 2 1 9 9 C 1.41418 * 119.99815 * 341.54435 * 7 2 1 10 10 C 1.40759 * 120.64738 * 130.26919 * 9 7 2 11 11 C 1.50704 * 119.76987 * 0.02562 * 10 9 7 12 12 N 1.46895 * 109.47272 * 274.79747 * 11 10 9 13 13 N 1.31454 * 120.45732 * 179.72340 * 10 9 7 14 14 C 1.32072 * 122.00672 * 0.25839 * 13 10 9 15 15 C 1.38830 * 121.28263 * 359.97438 * 14 13 10 16 16 F 1.35099 * 120.31351 * 180.02562 * 15 14 13 17 17 C 1.38262 * 119.36809 * 0.02562 * 15 14 13 18 18 C 1.50702 * 120.90499 * 179.97438 * 17 15 14 19 19 F 1.39900 * 109.47097 * 21.69772 * 18 17 15 20 20 F 1.39901 * 109.47058 * 141.69824 * 18 17 15 21 21 H 0.97000 * 120.00005 * 5.01946 * 1 2 3 22 22 H 1.09009 * 109.47144 * 154.79832 * 11 10 9 23 23 H 1.08999 * 109.47500 * 34.80246 * 11 10 9 24 24 H 1.00899 * 111.00083 * 56.04975 * 12 11 10 25 25 H 1.00903 * 110.99820 * 180.02562 * 12 11 10 26 26 H 1.08003 * 119.36325 * 180.02562 * 14 13 10 27 27 H 1.09003 * 109.47245 * 261.69320 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0463 -1.2360 -0.2955 9 6 1.3555 -2.4050 0.3888 10 6 1.4316 -3.5585 -0.4143 11 6 2.2160 -3.5242 -1.7007 12 7 1.3654 -3.0034 -2.7792 13 7 0.8281 -4.6671 -0.0472 14 6 0.1300 -4.7467 1.0711 15 6 -0.0003 -3.6550 1.9189 16 9 -0.7187 -3.7585 3.0584 17 6 0.6123 -2.4610 1.5860 18 6 0.4931 -1.2541 2.4806 19 9 0.1665 -1.6653 3.7773 20 9 1.7119 -0.5675 2.5021 21 1 -0.4850 0.8368 -0.0735 22 1 2.5454 -4.5324 -1.9524 23 1 3.0852 -2.8778 -1.5792 24 1 0.9949 -2.0956 -2.5411 25 1 1.8689 -2.9710 -3.6530 26 1 -0.3482 -5.6794 1.3317 27 1 -0.2880 -0.5958 2.1005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238603766.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:54 Heat of formation + Delta-G solvation = -137.671560 kcal Electronic energy + Delta-G solvation = -18558.378017 eV Core-core repulsion = 15093.205333 eV Total energy + Delta-G solvation = -3465.172685 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.07779 -49.54588 -47.78201 -40.58524 -36.11596 -35.44491 -33.23809 -31.42078 -28.51785 -27.03588 -25.47419 -23.56279 -21.91567 -19.67972 -18.66619 -18.32096 -18.00977 -17.52853 -17.24732 -16.83377 -16.48847 -16.11692 -15.54799 -15.33173 -14.83943 -14.66388 -14.29244 -14.26328 -13.91656 -13.65679 -13.41027 -13.33937 -12.81881 -12.68862 -12.35398 -12.18158 -11.98336 -11.16138 -10.25795 -10.12165 -9.52867 -9.33503 -8.77465 -6.62690 0.27368 0.52187 1.38677 1.43741 1.52353 2.15940 2.58227 3.02196 3.06378 3.36860 3.49086 3.73243 3.86571 4.13664 4.25462 4.37966 4.46726 4.72592 4.74694 5.12931 5.14377 5.27943 5.43645 5.76721 6.21926 6.33918 6.45394 6.70340 6.82235 7.34964 8.20881 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.014913 C = 0.009089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.792275 B = 1877.117682 C = 3080.001179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.059 3.941 3 Si 0.961 3.039 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.471 4.471 8 H 0.098 0.902 9 C 0.111 3.889 10 C 0.039 3.961 11 C 0.145 3.855 12 N -0.844 5.844 13 N -0.439 5.439 14 C -0.048 4.048 15 C 0.085 3.915 16 F -0.141 7.141 17 C -0.255 4.255 18 C 0.330 3.670 19 F -0.218 7.218 20 F -0.195 7.195 21 H 0.296 0.704 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.343 0.657 25 H 0.349 0.651 26 H 0.168 0.832 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 1.324 -1.137 2.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.156 4.156 3 Si 0.783 3.217 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.501 4.501 8 H 0.116 0.884 9 C 0.105 3.895 10 C -0.107 4.107 11 C 0.014 3.986 12 N -0.376 5.376 13 N -0.147 5.147 14 C -0.203 4.203 15 C 0.064 3.936 16 F -0.120 7.120 17 C -0.264 4.264 18 C 0.277 3.723 19 F -0.199 7.199 20 F -0.176 7.176 21 H 0.106 0.894 22 H 0.096 0.904 23 H 0.065 0.935 24 H 0.156 0.844 25 H 0.163 0.837 26 H 0.185 0.815 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.632 0.070 -1.364 2.128 hybrid contribution 0.545 2.187 1.046 2.485 sum 2.177 2.257 -0.318 3.152 Atomic orbital electron populations 1.69737 1.08601 1.31543 1.35305 1.26348 0.95157 1.03155 0.90973 0.85487 0.79641 0.77082 0.79521 1.18233 1.19662 1.18748 1.19429 0.98927 0.90402 1.41347 0.88435 1.18120 0.88648 0.94625 0.88078 1.21864 1.01818 0.89623 0.97374 1.20120 0.92211 0.99767 0.86470 1.58646 1.40787 1.33224 1.04924 1.66996 1.05572 1.27885 1.14261 1.22344 1.06473 0.98088 0.93353 1.18620 0.94842 0.95825 0.84345 1.91422 1.75651 1.96770 1.48171 1.21041 1.11815 0.93890 0.99676 1.20070 0.84339 0.90918 0.76953 1.92911 1.92839 1.92010 1.42187 1.92874 1.47806 1.80639 1.96283 0.89354 0.90447 0.93481 0.84403 0.83701 0.81474 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -37.13 10.86 21.83 0.24 -36.90 15 2 C 0.06 2.57 3.32 85.26 0.28 2.86 15 3 Si 0.96 34.75 29.03 68.60 1.99 36.74 15 4 H -0.26 -8.73 7.11 99.48 0.71 -8.02 15 5 H -0.27 -9.72 7.11 99.48 0.71 -9.01 15 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 7 C -0.47 -21.32 6.48 23.47 0.15 -21.17 15 8 H 0.10 4.24 7.19 -2.91 -0.02 4.22 15 9 C 0.11 5.26 5.16 -21.20 -0.11 5.15 15 10 C 0.04 1.77 6.37 43.23 0.28 2.05 15 11 C 0.15 5.41 6.59 85.56 0.56 5.98 15 12 N -0.84 -29.45 9.61 -190.00 -1.83 -31.28 15 13 N -0.44 -19.89 10.25 -181.55 -1.86 -21.76 15 14 C -0.05 -2.11 11.16 84.80 0.95 -1.17 15 15 C 0.09 3.95 7.19 22.42 0.16 4.12 15 16 F -0.14 -6.26 15.30 44.97 0.69 -5.58 15 17 C -0.26 -12.34 5.46 -19.17 -0.10 -12.45 15 18 C 0.33 15.28 4.45 71.24 0.32 15.60 15 19 F -0.22 -9.88 15.29 44.97 0.69 -9.19 15 20 F -0.19 -9.05 13.78 44.97 0.62 -8.43 15 21 H 0.30 12.16 8.30 -92.71 -0.77 11.39 15 22 H 0.08 2.70 8.14 -2.38 -0.02 2.68 15 23 H 0.05 1.67 6.86 -2.39 -0.02 1.66 15 24 H 0.34 13.12 8.88 -89.69 -0.80 12.33 15 25 H 0.35 9.56 9.08 -89.69 -0.81 8.75 15 26 H 0.17 6.19 8.06 -2.91 -0.02 6.17 15 27 H 0.12 5.51 6.36 -2.39 -0.02 5.50 15 Total: -1.00 -51.51 244.49 2.67 -48.84 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -0.35 Total: 26.58 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 2.49 Total: 0.96 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -3.45 Total: -89.93 kcal Atomic # 9 Polarization: -25.19 SS G_CDS: 2.00 Total: -23.20 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 1.99 Total: 36.74 kcal Total: -51.51 2.67 -48.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238603766.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.832 kcal (2) G-P(sol) polarization free energy of solvation -51.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds