Wall clock time and date at job start Mon Mar 30 2020 03:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86804 * 120.00113 * 2 1 4 4 H 1.48495 * 109.47238 * 270.00376 * 3 2 1 5 5 H 1.48497 * 109.47254 * 30.00206 * 3 2 1 6 6 H 1.48501 * 109.47075 * 150.00149 * 3 2 1 7 7 C 1.40054 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00184 * 192.94290 * 7 2 1 9 9 C 1.41372 * 120.00060 * 12.94352 * 7 2 1 10 10 C 1.41323 * 121.05054 * 41.06996 * 9 7 2 11 11 F 1.35108 * 120.60612 * 0.02562 * 10 9 7 12 12 C 1.38072 * 118.79025 * 180.25218 * 10 9 7 13 13 N 1.31972 * 120.94979 * 359.79472 * 12 10 9 14 14 C 1.32039 * 122.36276 * 359.97438 * 13 12 10 15 15 C 1.50695 * 119.45457 * 180.02562 * 14 13 12 16 16 N 1.46899 * 109.47410 * 269.98439 * 15 14 13 17 17 C 1.37655 * 121.09841 * 0.02562 * 14 13 12 18 18 C 1.50699 * 120.55288 * 179.97438 * 17 14 13 19 19 F 1.39897 * 109.47403 * 323.45830 * 18 17 14 20 20 F 1.39902 * 109.47228 * 203.45411 * 18 17 14 21 21 H 0.97008 * 120.00166 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.53055 * 179.77137 * 12 10 9 23 23 H 1.09006 * 109.46931 * 29.98475 * 15 14 13 24 24 H 1.09004 * 109.47606 * 149.97786 * 15 14 13 25 25 H 1.00893 * 111.00543 * 56.04009 * 16 15 14 26 26 H 1.00895 * 111.00052 * 179.97438 * 16 15 14 27 27 H 1.09001 * 109.46814 * 83.45566 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4390 2.6527 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0077 -1.2129 -0.0005 8 1 3.0672 -1.2249 0.2090 9 6 1.3278 -2.4216 -0.2753 10 6 0.3510 -2.4931 -1.2942 11 9 0.0449 -1.4030 -2.0314 12 6 -0.2881 -3.6961 -1.5194 13 7 0.0053 -4.7650 -0.8031 14 6 0.9134 -4.7462 0.1553 15 6 1.1969 -6.0059 0.9323 16 7 0.3126 -6.0682 2.1037 17 6 1.6055 -3.5951 0.4564 18 6 2.6390 -3.5874 1.5532 19 9 2.2152 -4.4139 2.5992 20 9 2.8052 -2.2820 2.0282 21 1 -0.4851 0.8401 0.0004 22 1 -1.0392 -3.7633 -2.2925 23 1 1.0189 -6.8730 0.2962 24 1 2.2361 -6.0039 1.2612 25 1 -0.6563 -6.0064 1.8291 26 1 0.4831 -6.9047 2.6413 27 1 3.5874 -3.9548 1.1612 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238604033.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:50 Heat of formation + Delta-G solvation = -130.440759 kcal Electronic energy + Delta-G solvation = -18427.069240 eV Core-core repulsion = 14962.210106 eV Total energy + Delta-G solvation = -3464.859134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.53699 -49.09228 -47.55121 -40.43292 -36.16124 -35.33355 -33.32703 -31.38529 -28.40723 -26.85021 -25.64844 -22.91643 -22.39552 -19.48514 -18.36205 -18.25645 -18.01106 -17.27025 -16.76934 -16.69567 -16.31581 -15.99469 -15.58305 -15.34993 -14.62959 -14.32332 -14.30297 -13.90002 -13.69670 -13.60389 -13.21634 -13.02684 -12.83593 -12.59268 -12.41947 -11.97511 -11.84360 -11.15482 -10.17627 -9.99958 -9.51460 -9.29209 -8.80867 -6.64125 0.35068 0.69765 1.36377 1.45706 1.51016 2.16854 2.63030 3.12534 3.28483 3.51129 3.69530 3.85436 4.00645 4.16951 4.26140 4.37997 4.48043 4.66998 4.88358 5.07187 5.12513 5.35111 5.54482 5.92032 6.21710 6.27871 6.54687 6.68604 6.72968 7.33646 8.21900 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.010864 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.945932 B = 2576.790956 C = 3397.978794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.463 4.463 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.035 4.035 11 F -0.145 7.145 12 C 0.074 3.926 13 N -0.546 5.546 14 C 0.151 3.849 15 C 0.126 3.874 16 N -0.839 5.839 17 C -0.296 4.296 18 C 0.332 3.668 19 F -0.192 7.192 20 F -0.207 7.207 21 H 0.291 0.709 22 H 0.159 0.841 23 H 0.046 0.954 24 H 0.095 0.905 25 H 0.339 0.661 26 H 0.355 0.645 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.111 -5.587 1.325 7.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.493 4.493 8 H 0.117 0.883 9 C 0.091 3.909 10 C -0.059 4.059 11 F -0.124 7.124 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.013 3.987 15 C -0.005 4.005 16 N -0.371 5.371 17 C -0.302 4.302 18 C 0.278 3.722 19 F -0.173 7.173 20 F -0.188 7.188 21 H 0.102 0.898 22 H 0.176 0.824 23 H 0.064 0.936 24 H 0.113 0.887 25 H 0.151 0.849 26 H 0.170 0.830 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.798 -5.535 1.397 6.856 hybrid contribution -0.225 1.130 -0.473 1.245 sum 3.573 -4.405 0.924 5.747 Atomic orbital electron populations 1.69747 1.09344 1.31361 1.33293 1.26776 0.95470 1.04790 0.91378 0.85142 0.79320 0.75553 0.79539 1.18595 1.19380 1.17435 1.19829 0.97481 0.90450 1.41553 0.88276 1.17938 0.90323 0.93807 0.88859 1.19233 1.05806 0.84181 0.96666 1.91303 1.92336 1.53910 1.74872 1.22492 0.98550 0.87553 0.99245 1.67396 1.19203 1.29210 1.10172 1.20803 0.90882 0.94547 0.92429 1.20547 0.98672 0.91363 0.89911 1.58538 1.08687 1.46799 1.23058 1.21184 1.09376 0.96231 1.03417 1.20015 0.97160 0.73488 0.81540 1.93011 1.92215 1.71297 1.60820 1.92965 1.96410 1.39748 1.89661 0.89808 0.82406 0.93623 0.88705 0.84911 0.83011 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.49 11.09 21.84 0.24 -43.25 15 2 C 0.03 1.68 4.78 85.30 0.41 2.09 15 3 Si 0.98 38.62 29.58 68.60 2.03 40.65 15 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 5 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 15 7 C -0.46 -24.02 6.78 23.48 0.16 -23.86 15 8 H 0.10 4.88 6.83 -2.91 -0.02 4.86 15 9 C 0.10 5.17 5.36 -21.06 -0.11 5.06 15 10 C -0.03 -1.80 6.71 22.99 0.15 -1.65 15 11 F -0.15 -7.78 14.63 44.97 0.66 -7.12 15 12 C 0.07 3.42 11.16 84.63 0.94 4.36 15 13 N -0.55 -24.07 10.24 -184.23 -1.89 -25.95 15 14 C 0.15 6.33 6.26 42.39 0.27 6.59 15 15 C 0.13 4.07 6.02 85.56 0.52 4.58 15 16 N -0.84 -25.45 8.38 -190.01 -1.59 -27.04 15 17 C -0.30 -13.55 5.80 -19.31 -0.11 -13.66 15 18 C 0.33 13.09 4.89 71.24 0.35 13.44 15 19 F -0.19 -7.30 13.46 44.97 0.61 -6.70 15 20 F -0.21 -9.32 13.94 44.97 0.63 -8.69 15 21 H 0.29 14.28 8.29 -92.70 -0.77 13.51 15 22 H 0.16 6.31 8.06 -2.91 -0.02 6.29 15 23 H 0.05 1.35 8.14 -2.38 -0.02 1.33 15 24 H 0.09 2.78 6.26 -2.39 -0.01 2.76 15 25 H 0.34 10.55 8.98 -89.70 -0.81 9.75 15 26 H 0.36 8.20 9.08 -89.70 -0.81 7.39 15 27 H 0.13 4.07 8.14 -2.39 -0.02 4.05 15 Total: -1.00 -61.50 244.18 2.89 -58.61 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -0.37 Total: 22.53 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 2.57 Total: -3.03 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -3.24 Total: -96.25 kcal Atomic # 9 Polarization: -24.40 SS G_CDS: 1.89 Total: -22.51 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -61.50 2.89 -58.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238604033.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.829 kcal (2) G-P(sol) polarization free energy of solvation -61.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds