Wall clock time and date at job start Mon Mar 30 2020 03:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86802 * 120.00121 * 2 1 4 4 H 1.48494 * 109.47344 * 275.40720 * 3 2 1 5 5 H 1.48508 * 109.46979 * 35.40682 * 3 2 1 6 6 H 1.48499 * 109.47030 * 155.40548 * 3 2 1 7 7 C 1.39940 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99917 * 341.82006 * 7 2 1 9 9 C 1.41331 * 120.00041 * 161.81694 * 7 2 1 10 10 C 1.40695 * 120.68503 * 330.38769 * 9 7 2 11 11 N 1.31478 * 120.42151 * 180.02562 * 10 9 7 12 12 C 1.32154 * 122.06367 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.32028 * 180.02562 * 12 11 10 14 14 F 1.39902 * 109.46712 * 29.98308 * 13 12 11 15 15 F 1.39902 * 109.47092 * 149.97690 * 13 12 11 16 16 C 1.38377 * 121.36234 * 359.97438 * 12 11 10 17 17 C 1.50705 * 120.30615 * 179.97438 * 16 12 11 18 18 N 1.46898 * 109.46803 * 89.99886 * 17 16 12 19 19 C 1.38437 * 119.39448 * 0.25919 * 16 12 11 20 20 F 1.35096 * 120.93682 * 179.74935 * 19 16 12 21 21 H 0.97002 * 119.99609 * 359.97438 * 1 2 3 22 22 H 1.08006 * 119.79382 * 359.97438 * 10 9 7 23 23 H 1.08994 * 109.47503 * 269.97783 * 13 12 11 24 24 H 1.09004 * 109.46867 * 330.00470 * 17 16 12 25 25 H 1.08995 * 109.47218 * 210.00079 * 17 16 12 26 26 H 1.00907 * 110.99756 * 180.02562 * 18 17 16 27 27 H 1.00902 * 111.00618 * 303.95354 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3758 2.1124 -1.3938 5 1 1.5017 2.6170 0.8112 6 1 3.5925 1.4098 0.5827 7 6 2.0081 -1.2119 -0.0005 8 1 1.5086 -2.1240 0.2909 9 6 3.3685 -1.2423 -0.3825 10 6 3.8753 -0.3119 -1.3083 11 7 5.1416 -0.3452 -1.6603 12 6 5.9828 -1.2388 -1.1700 13 6 7.4221 -1.2202 -1.6163 14 9 7.7941 0.0899 -1.9364 15 9 8.2367 -1.6972 -0.5838 16 6 5.5696 -2.1906 -0.2546 17 6 6.5490 -3.1989 0.2888 18 7 7.1795 -2.6640 1.5029 19 6 4.2468 -2.2119 0.1532 20 9 3.8086 -3.1305 1.0416 21 1 -0.4850 0.8401 0.0004 22 1 3.2198 0.4340 -1.7331 23 1 7.5386 -1.8557 -2.4941 24 1 7.3153 -3.4009 -0.4597 25 1 6.0234 -4.1230 0.5292 26 1 7.8415 -3.3219 1.8865 27 1 7.6190 -1.7742 1.3203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238605368.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:36 Heat of formation + Delta-G solvation = -117.868414 kcal Electronic energy + Delta-G solvation = -18127.845520 eV Core-core repulsion = 14663.531564 eV Total energy + Delta-G solvation = -3464.313956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.66646 -47.67227 -46.63509 -38.87875 -34.91187 -34.01081 -31.56301 -30.40539 -27.61745 -24.85922 -24.09404 -21.49362 -20.95392 -17.88913 -17.48867 -17.23233 -16.97398 -16.11793 -15.58596 -15.19860 -14.66683 -14.60362 -14.10291 -13.56825 -13.54567 -13.38387 -12.93630 -12.71671 -12.66678 -12.30403 -12.25019 -11.62450 -11.25630 -11.20087 -10.99225 -10.49328 -10.09691 -9.57288 -8.64538 -8.45691 -8.27621 -8.10257 -7.39140 -4.92461 1.87289 2.17053 2.91043 3.00737 3.10666 3.68754 4.02734 4.17026 4.64446 4.83792 5.01073 5.11556 5.27385 5.46330 5.50816 5.66006 5.95967 5.96994 6.35448 6.47730 6.71912 6.79707 7.11469 7.40121 7.51627 7.82399 7.83895 8.03087 8.22113 8.96932 9.59112 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.009577 C = 0.007726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.836990 B = 2923.087610 C = 3623.482824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.082 3.918 3 Si 0.910 3.090 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.399 4.399 8 H 0.104 0.896 9 C 0.022 3.978 10 C -0.010 4.010 11 N -0.424 5.424 12 C -0.090 4.090 13 C 0.346 3.654 14 F -0.198 7.198 15 F -0.208 7.208 16 C -0.092 4.092 17 C 0.105 3.895 18 N -0.840 5.840 19 C 0.040 3.960 20 F -0.138 7.138 21 H 0.296 0.704 22 H 0.144 0.856 23 H 0.109 0.891 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.334 0.666 27 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 -1.695 -1.530 8.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.165 1.165 7 C -0.426 4.426 8 H 0.122 0.878 9 C 0.016 3.984 10 C -0.175 4.175 11 N -0.131 5.131 12 C -0.227 4.227 13 C 0.291 3.709 14 F -0.179 7.179 15 F -0.190 7.190 16 C -0.096 4.096 17 C -0.026 4.026 18 N -0.372 5.372 19 C 0.014 3.986 20 F -0.117 7.117 21 H 0.107 0.893 22 H 0.161 0.839 23 H 0.126 0.874 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.932 -1.036 -1.749 8.188 hybrid contribution 0.596 -0.076 0.316 0.679 sum 8.528 -1.112 -1.434 8.719 Atomic orbital electron populations 1.69652 1.08230 1.31544 1.29751 1.26299 0.94966 1.02207 0.90775 0.86308 0.81392 0.78933 0.79971 1.18311 1.20548 1.16534 1.19578 0.92107 0.96883 1.34046 0.87850 1.18732 0.94210 0.92582 0.92880 1.22289 0.91237 1.03236 1.00740 1.66502 1.03873 1.19729 1.23008 1.20033 0.94627 1.00834 1.07175 1.19800 0.84952 0.79017 0.87098 1.92961 1.92390 1.39534 1.93030 1.92784 1.75429 1.87975 1.62781 1.19877 0.93596 0.98153 0.97979 1.20619 0.94785 0.95767 0.91435 1.58830 1.39556 1.08324 1.30515 1.17503 0.91277 0.94629 0.95233 1.91354 1.89988 1.64263 1.66091 0.89299 0.83898 0.87387 0.93952 0.90976 0.85457 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.63 13.93 55.55 0.77 -17.86 15 2 C 0.08 1.97 5.41 -17.34 -0.09 1.88 15 3 Si 0.91 19.39 24.53 -169.99 -4.17 15.22 15 4 H -0.26 -5.26 6.71 56.52 0.38 -4.88 15 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 6 H -0.24 -5.55 6.85 56.52 0.39 -5.17 15 7 C -0.40 -10.18 9.33 -37.77 -0.35 -10.53 15 8 H 0.10 2.77 8.02 -52.48 -0.42 2.35 15 9 C 0.02 0.55 5.12 -106.60 -0.55 0.00 15 10 C -0.01 -0.23 8.38 -16.78 -0.14 -0.37 15 11 N -0.42 -9.82 9.92 -8.83 -0.09 -9.91 15 12 C -0.09 -1.90 6.59 -82.40 -0.54 -2.44 15 13 C 0.35 5.90 5.26 36.00 0.19 6.09 15 14 F -0.20 -3.68 17.05 2.25 0.04 -3.64 15 15 F -0.21 -3.30 11.72 2.25 0.03 -3.28 15 16 C -0.09 -1.95 5.37 -104.49 -0.56 -2.51 15 17 C 0.10 1.82 5.80 -4.97 -0.03 1.79 15 18 N -0.84 -13.83 9.39 -11.41 -0.11 -13.94 15 19 C 0.04 0.95 7.31 -38.32 -0.28 0.67 15 20 F -0.14 -3.28 16.21 2.25 0.04 -3.25 15 21 H 0.30 6.36 8.30 -40.82 -0.34 6.02 15 22 H 0.14 3.28 4.72 -52.48 -0.25 3.03 15 23 H 0.11 1.47 8.14 -51.93 -0.42 1.05 15 24 H 0.04 0.65 6.02 -51.93 -0.31 0.34 15 25 H 0.07 1.25 7.70 -51.93 -0.40 0.85 15 26 H 0.33 4.42 9.08 -39.29 -0.36 4.06 15 27 H 0.34 5.78 6.94 -39.29 -0.27 5.50 15 LS Contribution 240.90 15.07 3.63 3.63 Total: -1.00 -26.70 240.90 -3.82 -30.52 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -1.60 Total: 7.93 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.36 Total: -5.43 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.58 Total: -41.71 kcal Atomic # 9 Polarization: -10.26 SS G_CDS: 0.10 Total: -10.16 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.17 Total: 15.22 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -26.70 -3.82 -30.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238605368.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.345 kcal (2) G-P(sol) polarization free energy of solvation -26.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds