Wall clock time and date at job start Mon Mar 30 2020 03:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86805 * 120.00137 * 2 1 4 4 H 1.48499 * 109.47272 * 239.99647 * 3 2 1 5 5 H 1.48491 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46911 * 119.99984 * 3 2 1 7 7 C 1.39946 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00333 * 161.17708 * 7 2 1 9 9 C 1.41409 * 120.00100 * 341.17798 * 7 2 1 10 10 C 1.41067 * 120.64950 * 130.13402 * 9 7 2 11 11 C 1.50702 * 120.90857 * 0.02562 * 10 9 7 12 12 N 1.46901 * 109.47099 * 89.99515 * 11 10 9 13 13 C 1.38221 * 118.18125 * 180.27286 * 10 9 7 14 14 F 1.35099 * 120.31203 * 179.73171 * 13 10 9 15 15 C 1.38877 * 119.36948 * 359.51362 * 13 10 9 16 16 N 1.32041 * 121.27992 * 0.50574 * 15 13 10 17 17 C 1.31495 * 122.00698 * 359.74396 * 16 15 13 18 18 C 1.50695 * 119.77302 * 180.02562 * 17 16 15 19 19 F 1.39908 * 109.46978 * 20.25827 * 18 17 16 20 20 F 1.39897 * 109.47219 * 140.25380 * 18 17 16 21 21 H 0.97000 * 119.99915 * 5.15697 * 1 2 3 22 22 H 1.08999 * 109.46960 * 329.99178 * 11 10 9 23 23 H 1.08995 * 109.47086 * 209.99283 * 11 10 9 24 24 H 1.00901 * 110.99943 * 299.99923 * 12 11 10 25 25 H 1.00906 * 110.99791 * 63.95394 * 12 11 10 26 26 H 1.08001 * 119.35427 * 180.22854 * 15 13 10 27 27 H 1.09001 * 109.47296 * 260.25890 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0446 -1.2371 -0.3012 9 6 1.3577 -2.4037 0.3962 10 6 1.4271 -3.5615 -0.4068 11 6 2.1945 -3.5591 -1.7038 12 7 3.5855 -3.9578 -1.4504 13 6 0.7676 -4.6965 0.0260 14 9 0.8011 -5.8276 -0.7120 15 6 0.0742 -4.6644 1.2288 16 7 0.0244 -3.5677 1.9624 17 6 0.6281 -2.4577 1.5984 18 6 0.5385 -1.2351 2.4748 19 9 0.1908 -1.6178 3.7748 20 9 1.7769 -0.5846 2.4958 21 1 -0.4850 0.8367 -0.0755 22 1 2.1761 -2.5582 -2.1350 23 1 1.7358 -4.2625 -2.3986 24 1 4.0330 -3.3208 -0.8085 25 1 3.6335 -4.9067 -1.1106 26 1 -0.4379 -5.5526 1.5686 27 1 -0.2202 -0.5595 2.0797 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238607453.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:31 Heat of formation + Delta-G solvation = -124.559691 kcal Electronic energy + Delta-G solvation = -18407.594397 eV Core-core repulsion = 14942.990286 eV Total energy + Delta-G solvation = -3464.604111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.22097 -47.88729 -45.90047 -38.87672 -34.84042 -34.01850 -30.60524 -30.35880 -26.73609 -25.34828 -23.92698 -21.80293 -20.25818 -18.02289 -16.99816 -16.49720 -16.26387 -15.82281 -15.64259 -15.17162 -14.98508 -14.89316 -13.73593 -13.33586 -13.19641 -12.92696 -12.71319 -12.53910 -12.34432 -11.93564 -11.76850 -11.58962 -11.20409 -11.07822 -10.78610 -10.60920 -10.12461 -9.28990 -8.97129 -8.43221 -8.08000 -7.72033 -7.12537 -4.90840 1.95363 2.25341 2.95738 2.97270 3.05505 3.75994 4.23141 4.73390 4.75789 5.08952 5.28355 5.33389 5.49089 5.64873 5.96721 6.05286 6.15727 6.28219 6.51375 6.70501 6.83193 6.97473 7.13313 7.48818 7.59531 7.90069 7.92916 8.11961 8.42682 8.96347 9.84519 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.021587 B = 0.012174 C = 0.008775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.742702 B = 2299.417707 C = 3189.999781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.081 3.919 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.454 4.454 8 H 0.095 0.905 9 C 0.128 3.872 10 C -0.211 4.211 11 C 0.122 3.878 12 N -0.840 5.840 13 C 0.083 3.917 14 F -0.150 7.150 15 C -0.043 4.043 16 N -0.420 5.420 17 C -0.018 4.018 18 C 0.337 3.663 19 F -0.214 7.214 20 F -0.192 7.192 21 H 0.290 0.710 22 H 0.091 0.909 23 H 0.064 0.936 24 H 0.341 0.659 25 H 0.331 0.669 26 H 0.141 0.859 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.634 -0.408 -0.173 1.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.137 4.137 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.483 4.483 8 H 0.113 0.887 9 C 0.123 3.877 10 C -0.221 4.221 11 C -0.008 4.008 12 N -0.366 5.366 13 C 0.061 3.939 14 F -0.129 7.129 15 C -0.201 4.201 16 N -0.128 5.128 17 C -0.162 4.162 18 C 0.282 3.718 19 F -0.196 7.196 20 F -0.173 7.173 21 H 0.101 0.899 22 H 0.109 0.891 23 H 0.083 0.917 24 H 0.153 0.847 25 H 0.141 0.859 26 H 0.159 0.841 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.110 -0.188 -0.155 1.137 hybrid contribution 0.277 0.372 0.149 0.487 sum 1.388 0.185 -0.006 1.400 Atomic orbital electron populations 1.69704 1.07725 1.30798 1.34828 1.25868 0.94795 1.01432 0.91577 0.86245 0.80392 0.79192 0.80416 1.18896 1.20149 1.17885 1.19281 0.99063 0.90016 1.39979 0.88730 1.17787 0.88878 0.92176 0.88854 1.21358 1.06460 0.94000 1.00306 1.20451 0.86115 1.02207 0.92015 1.59175 1.16194 1.07041 1.54193 1.18676 1.00767 0.82437 0.92045 1.91380 1.95223 1.49679 1.76648 1.21887 1.07311 0.97331 0.93555 1.66725 1.15569 0.98426 1.32038 1.21657 1.05810 0.93054 0.95671 1.20094 0.83483 0.91062 0.77111 1.92895 1.92257 1.92852 1.41583 1.92910 1.46042 1.82067 1.96279 0.89860 0.89054 0.91731 0.84653 0.85856 0.84148 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.55 10.84 55.55 0.60 -17.95 15 2 C 0.08 1.81 3.32 -17.34 -0.06 1.75 15 3 Si 0.91 17.56 29.01 -169.99 -4.93 12.63 15 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 5 H -0.28 -5.18 7.11 56.52 0.40 -4.77 15 6 H -0.25 -4.99 7.11 56.52 0.40 -4.59 15 7 C -0.45 -10.46 6.19 -37.74 -0.23 -10.70 15 8 H 0.09 2.09 7.77 -52.49 -0.41 1.69 15 9 C 0.13 3.05 5.15 -106.68 -0.55 2.50 15 10 C -0.21 -4.62 5.52 -103.56 -0.57 -5.19 15 11 C 0.12 2.36 6.42 -4.97 -0.03 2.33 15 12 N -0.84 -14.46 9.60 -11.41 -0.11 -14.57 15 13 C 0.08 1.78 7.28 -39.35 -0.29 1.49 15 14 F -0.15 -2.96 16.59 2.25 0.04 -2.93 15 15 C -0.04 -0.93 11.17 -17.23 -0.19 -1.13 15 16 N -0.42 -10.07 9.83 -8.73 -0.09 -10.16 15 17 C -0.02 -0.44 6.31 -81.80 -0.52 -0.95 15 18 C 0.34 7.80 4.48 36.00 0.16 7.96 15 19 F -0.21 -4.91 16.96 2.25 0.04 -4.87 15 20 F -0.19 -4.44 13.79 2.25 0.03 -4.41 15 21 H 0.29 6.14 8.30 -40.82 -0.34 5.80 15 22 H 0.09 1.85 7.22 -51.93 -0.38 1.47 15 23 H 0.06 1.20 7.71 -51.93 -0.40 0.80 15 24 H 0.34 5.87 8.88 -39.29 -0.35 5.52 15 25 H 0.33 5.37 9.06 -39.29 -0.36 5.01 15 26 H 0.14 2.66 8.06 -52.49 -0.42 2.24 15 27 H 0.12 2.80 6.18 -51.93 -0.32 2.48 15 LS Contribution 246.97 15.07 3.72 3.72 Total: -1.00 -24.67 246.97 -4.74 -29.42 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -1.77 Total: 11.05 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.28 Total: -1.93 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.41 Total: -42.68 kcal Atomic # 9 Polarization: -12.31 SS G_CDS: 0.11 Total: -12.21 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -4.93 Total: 12.63 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -24.67 -4.74 -29.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238607453.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.145 kcal (2) G-P(sol) polarization free energy of solvation -24.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds