Wall clock time and date at job start Mon Mar 30 2020 03:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86799 * 120.00024 * 2 1 4 4 H 1.48507 * 109.46939 * 240.00071 * 3 2 1 5 5 H 1.48497 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47507 * 119.99969 * 3 2 1 7 7 C 1.40038 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00097 * 199.08444 * 7 2 1 9 9 C 1.41524 * 120.00223 * 19.36040 * 7 2 1 10 10 C 1.41117 * 121.01750 * 233.77260 * 9 7 2 11 11 C 1.50703 * 120.53900 * 359.97438 * 10 9 7 12 12 F 1.39899 * 109.47199 * 299.44629 * 11 10 9 13 13 F 1.39906 * 109.46922 * 59.44410 * 11 10 9 14 14 C 1.37628 * 118.92524 * 179.97438 * 10 9 7 15 15 N 1.32085 * 121.04968 * 359.97438 * 14 10 9 16 16 C 1.32171 * 122.28275 * 0.02562 * 15 14 10 17 17 F 1.35099 * 119.52798 * 180.02562 * 16 15 14 18 18 C 1.38094 * 120.93931 * 359.72253 * 16 15 14 19 19 C 1.50700 * 120.58419 * 180.30509 * 18 16 15 20 20 N 1.46896 * 109.47417 * 270.22902 * 19 18 16 21 21 H 0.96996 * 120.00163 * 4.67333 * 1 2 3 22 22 H 1.09000 * 109.47032 * 179.44733 * 11 10 9 23 23 H 1.08000 * 119.47369 * 179.97438 * 14 10 9 24 24 H 1.09007 * 109.47086 * 30.23383 * 19 18 16 25 25 H 1.08999 * 109.47306 * 150.22380 * 19 18 16 26 26 H 1.00903 * 111.00153 * 56.04335 * 20 19 18 27 27 H 1.00894 * 111.00047 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6965 1.2124 7 6 2.0076 -1.2128 0.0005 8 1 3.0430 -1.2383 0.3064 9 6 1.3600 -2.4040 -0.4052 10 6 1.3487 -3.5447 0.4254 11 6 2.0298 -3.5200 1.7695 12 9 3.3938 -3.2618 1.5965 13 9 1.4620 -2.5162 2.5616 14 6 0.7056 -4.6802 -0.0119 15 7 0.1050 -4.7129 -1.1878 16 6 0.0880 -3.6711 -2.0010 17 9 -0.5437 -3.7659 -3.1914 18 6 0.7014 -2.4852 -1.6485 19 6 0.6712 -1.3001 -2.5790 20 7 1.8345 -1.3510 -3.4746 21 1 -0.4850 0.8372 -0.0684 22 1 1.9020 -4.4853 2.2594 23 1 0.6918 -5.5585 0.6165 24 1 -0.2441 -1.3257 -3.1703 25 1 0.7014 -0.3796 -1.9961 26 1 1.8643 -2.2242 -3.9794 27 1 1.8368 -0.5666 -4.1092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238609338.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:08 Heat of formation + Delta-G solvation = -136.013657 kcal Electronic energy + Delta-G solvation = -18362.834686 eV Core-core repulsion = 14897.733893 eV Total energy + Delta-G solvation = -3465.100793 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.88105 -49.51931 -47.53244 -40.53872 -36.73045 -35.01735 -33.21501 -31.74209 -28.50656 -26.61577 -25.69956 -23.24019 -22.00152 -19.83410 -18.75086 -17.94744 -17.80246 -17.54617 -17.11191 -16.93260 -16.66328 -16.52195 -15.25545 -15.02867 -14.64844 -14.52397 -14.27952 -13.95786 -13.90973 -13.73862 -13.45553 -13.22013 -13.05699 -12.76982 -12.46495 -12.03611 -11.66113 -10.88788 -10.28297 -9.90103 -9.68483 -9.45479 -8.73211 -6.60657 0.22075 0.68533 1.39828 1.44114 1.50440 2.22471 2.58974 2.88651 3.10842 3.29150 3.65698 3.89973 4.00162 4.08723 4.33909 4.42813 4.50376 4.53955 4.86609 5.08891 5.26726 5.36578 5.73606 5.88279 6.26779 6.29361 6.56803 6.68743 6.81784 7.02854 8.29553 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.017327 B = 0.014403 C = 0.009130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.633669 B = 1943.512399 C = 3066.112443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.064 3.936 3 Si 0.954 3.046 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.483 4.483 8 H 0.082 0.918 9 C 0.191 3.809 10 C -0.330 4.330 11 C 0.338 3.662 12 F -0.219 7.219 13 F -0.216 7.216 14 C 0.172 3.828 15 N -0.597 5.597 16 C 0.289 3.711 17 F -0.135 7.135 18 C -0.206 4.206 19 C 0.124 3.876 20 N -0.837 5.837 21 H 0.290 0.710 22 H 0.156 0.844 23 H 0.193 0.807 24 H 0.009 0.991 25 H 0.092 0.908 26 H 0.335 0.665 27 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 -2.125 0.063 2.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.151 4.151 3 Si 0.775 3.225 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.514 4.514 8 H 0.100 0.900 9 C 0.182 3.818 10 C -0.336 4.336 11 C 0.284 3.716 12 F -0.200 7.200 13 F -0.197 7.197 14 C 0.017 3.983 15 N -0.316 5.316 16 C 0.141 3.859 17 F -0.114 7.114 18 C -0.212 4.212 19 C -0.007 4.007 20 N -0.367 5.367 21 H 0.101 0.899 22 H 0.173 0.827 23 H 0.210 0.790 24 H 0.027 0.973 25 H 0.110 0.890 26 H 0.147 0.853 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.834 -2.626 0.468 3.236 hybrid contribution -0.310 1.496 -0.867 1.757 sum 1.524 -1.129 -0.399 1.938 Atomic orbital electron populations 1.69818 1.08556 1.31297 1.35481 1.26167 0.94995 1.03009 0.90889 0.85674 0.79474 0.77114 0.80212 1.18035 1.19211 1.18978 1.19273 0.98546 0.91645 1.41917 0.90036 1.17564 0.84379 0.92300 0.87554 1.21980 1.12965 0.99390 0.99239 1.20261 0.73381 0.90197 0.87734 1.92909 1.35042 1.95745 1.96313 1.92947 1.84991 1.66339 1.75417 1.22283 0.89330 0.96693 0.90023 1.66876 1.27028 1.30253 1.07423 1.18153 0.93822 0.91694 0.82274 1.91454 1.80249 1.96729 1.43001 1.20806 1.07593 0.94620 0.98169 1.20409 0.89801 0.97832 0.92620 1.58634 1.44467 1.07609 1.25979 0.89910 0.82707 0.79000 0.97255 0.88995 0.85316 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.95 11.81 21.84 0.26 -40.69 15 2 C 0.06 3.08 3.37 85.29 0.29 3.36 15 3 Si 0.95 37.72 29.60 68.60 2.03 39.75 15 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 5 H -0.27 -9.99 7.11 99.48 0.71 -9.29 15 6 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 7 C -0.48 -24.35 6.96 23.52 0.16 -24.19 15 8 H 0.08 4.23 7.14 -2.91 -0.02 4.21 15 9 C 0.19 9.41 5.11 -21.10 -0.11 9.30 15 10 C -0.33 -14.23 5.43 -19.30 -0.10 -14.33 15 11 C 0.34 12.56 5.06 71.24 0.36 12.92 15 12 F -0.22 -8.79 16.18 44.97 0.73 -8.07 15 13 F -0.22 -9.32 16.63 44.97 0.75 -8.57 15 14 C 0.17 6.65 10.81 84.51 0.91 7.56 15 15 N -0.60 -26.35 10.35 -197.47 -2.04 -28.40 15 16 C 0.29 13.45 8.35 84.61 0.71 14.16 15 17 F -0.13 -5.93 16.51 44.97 0.74 -5.19 15 18 C -0.21 -9.87 5.19 -19.24 -0.10 -9.97 15 19 C 0.12 5.45 6.17 85.56 0.53 5.98 15 20 N -0.84 -31.47 9.61 -190.01 -1.83 -33.30 15 21 H 0.29 13.25 8.30 -92.71 -0.77 12.48 15 22 H 0.16 3.87 7.89 -2.39 -0.02 3.85 15 23 H 0.19 5.26 7.94 -2.91 -0.02 5.24 15 24 H 0.01 0.40 7.66 -2.38 -0.02 0.39 15 25 H 0.09 4.32 4.25 -2.39 -0.01 4.31 15 26 H 0.33 11.83 8.99 -89.69 -0.81 11.02 15 27 H 0.35 10.82 9.08 -89.70 -0.81 10.01 15 Total: -1.00 -59.45 249.70 2.92 -56.53 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -0.36 Total: 23.14 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 2.65 Total: 4.79 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -3.61 Total: -102.38 kcal Atomic # 9 Polarization: -24.04 SS G_CDS: 2.22 Total: -21.83 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -59.45 2.92 -56.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238609338.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.487 kcal (2) G-P(sol) polarization free energy of solvation -59.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds