Wall clock time and date at job start Mon Mar 30 2020 03:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86797 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47395 * 300.00478 * 3 2 1 6 6 H 1.48501 * 109.47161 * 60.00770 * 3 2 1 7 7 C 1.39921 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99759 * 191.61915 * 7 2 1 9 9 C 1.41352 * 119.99772 * 11.61319 * 7 2 1 10 10 C 1.40744 * 120.62803 * 27.96061 * 9 7 2 11 11 N 1.31518 * 120.30636 * 180.02562 * 10 9 7 12 12 C 1.32316 * 121.80089 * 359.97438 * 11 10 9 13 13 F 1.35098 * 119.36958 * 180.02562 * 12 11 10 14 14 C 1.38962 * 121.26771 * 359.97438 * 12 11 10 15 15 C 1.50701 * 120.23574 * 179.97438 * 14 12 11 16 16 N 1.46904 * 109.46668 * 87.45713 * 15 14 12 17 17 C 1.36896 * 119.53188 * 0.25666 * 14 12 11 18 18 C 1.50693 * 120.82625 * 179.74546 * 17 14 12 19 19 F 1.39902 * 109.47264 * 292.18186 * 18 17 14 20 20 F 1.39902 * 109.47357 * 52.18102 * 18 17 14 21 21 H 0.97002 * 120.00373 * 359.97438 * 1 2 3 22 22 H 1.08004 * 119.84872 * 359.97438 * 10 9 7 23 23 H 1.09001 * 109.46714 * 327.46114 * 15 14 12 24 24 H 1.08992 * 109.47032 * 207.45818 * 15 14 12 25 25 H 1.00903 * 110.99431 * 179.97438 * 16 15 14 26 26 H 1.00896 * 111.00168 * 303.95940 * 16 15 14 27 27 H 1.08999 * 109.47392 * 172.18267 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7025 1.3465 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8838 2.3964 1.2126 7 6 2.0082 -1.2117 -0.0005 8 1 3.0716 -1.2213 0.1878 9 6 1.3231 -2.4232 -0.2475 10 6 0.1576 -2.4400 -1.0364 11 7 -0.4751 -3.5707 -1.2617 12 6 -0.0478 -4.7199 -0.7641 13 9 -0.7358 -5.8525 -1.0273 14 6 1.0955 -4.7845 0.0231 15 6 1.5608 -6.1059 0.5785 16 7 2.4327 -6.7686 -0.4007 17 6 1.7928 -3.6383 0.2954 18 6 3.0332 -3.6738 1.1504 19 9 2.6839 -3.9991 2.4655 20 9 3.9166 -4.6367 0.6509 21 1 -0.4851 0.8400 0.0004 22 1 -0.2194 -1.5199 -1.4580 23 1 0.6970 -6.7385 0.7827 24 1 2.1142 -5.9371 1.5022 25 1 2.7585 -7.6574 -0.0513 26 1 1.9633 -6.8781 -1.2871 27 1 3.5142 -2.6959 1.1336 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238609669.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:07 Heat of formation + Delta-G solvation = -125.653719 kcal Electronic energy + Delta-G solvation = -18173.617372 eV Core-core repulsion = 14708.965820 eV Total energy + Delta-G solvation = -3464.651552 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.12060 -47.74397 -46.03251 -38.74094 -34.85758 -34.08160 -31.87598 -29.70739 -26.38106 -25.46879 -24.13347 -21.16080 -20.81266 -17.81488 -17.14214 -16.86551 -16.30843 -15.73034 -15.37367 -15.19150 -14.77332 -14.66784 -13.94883 -13.65243 -12.96302 -12.91503 -12.49776 -12.45249 -12.27876 -12.17156 -11.79198 -11.50250 -11.44965 -11.12642 -11.02853 -10.39793 -10.19274 -9.70471 -8.79245 -8.37254 -8.26738 -7.68886 -7.21149 -4.87333 2.21136 2.25934 2.88443 2.90688 2.94035 3.63464 4.22002 4.70314 4.92936 5.02560 5.18612 5.23628 5.46141 5.63953 5.74703 6.02326 6.09597 6.32981 6.66710 6.72180 6.81417 6.98498 7.38170 7.46455 7.64684 7.81417 7.89650 8.22522 8.31223 9.12157 9.74623 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.025106 B = 0.009620 C = 0.007507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.016177 B = 2909.909220 C = 3728.899798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.444 4.444 8 H 0.090 0.910 9 C 0.082 3.918 10 C 0.087 3.913 11 N -0.487 5.487 12 C 0.148 3.852 13 F -0.147 7.147 14 C -0.076 4.076 15 C 0.105 3.895 16 N -0.832 5.832 17 C -0.217 4.217 18 C 0.322 3.678 19 F -0.215 7.215 20 F -0.199 7.199 21 H 0.292 0.708 22 H 0.168 0.832 23 H 0.030 0.970 24 H 0.081 0.919 25 H 0.335 0.665 26 H 0.338 0.662 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -1.996 1.186 4.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.147 4.147 3 Si 0.745 3.255 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.473 4.473 8 H 0.108 0.892 9 C 0.077 3.923 10 C -0.080 4.080 11 N -0.199 5.199 12 C -0.001 4.001 13 F -0.127 7.127 14 C -0.080 4.080 15 C -0.026 4.026 16 N -0.361 5.361 17 C -0.225 4.225 18 C 0.268 3.732 19 F -0.196 7.196 20 F -0.180 7.180 21 H 0.103 0.897 22 H 0.185 0.815 23 H 0.048 0.952 24 H 0.099 0.901 25 H 0.147 0.853 26 H 0.150 0.850 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.584 -1.377 0.821 3.927 hybrid contribution 0.024 -0.293 0.553 0.626 sum 3.608 -1.671 1.374 4.207 Atomic orbital electron populations 1.69704 1.07728 1.30620 1.32386 1.26044 0.95008 1.02031 0.91626 0.86003 0.80762 0.79608 0.79095 1.17966 1.19165 1.19455 1.19617 0.96480 0.90029 1.41159 0.89169 1.18321 0.93007 0.91764 0.89249 1.22946 0.94361 0.93103 0.97597 1.66633 1.32861 0.98393 1.22037 1.17387 0.93719 0.82143 1.06821 1.91386 1.80050 1.47631 1.93660 1.19405 0.94568 0.95318 0.98678 1.20589 0.94570 0.91859 0.95592 1.58654 1.43670 1.27670 1.06071 1.19807 1.00827 0.94364 1.07502 1.20181 0.87356 0.90242 0.75395 1.92904 1.93223 1.94313 1.39180 1.93003 1.70102 1.67462 1.87412 0.89683 0.81522 0.95209 0.90091 0.85308 0.84972 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.79 10.86 55.55 0.60 -17.19 15 2 C 0.07 1.60 5.25 -17.34 -0.09 1.51 15 3 Si 0.92 16.20 29.57 -169.99 -5.03 11.17 15 4 H -0.26 -4.44 7.11 56.52 0.40 -4.03 15 5 H -0.27 -4.64 7.11 56.52 0.40 -4.24 15 6 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 7 C -0.44 -10.14 8.39 -37.77 -0.32 -10.46 15 8 H 0.09 1.91 6.33 -52.49 -0.33 1.57 15 9 C 0.08 1.99 5.57 -106.67 -0.59 1.40 15 10 C 0.09 2.17 9.87 -16.74 -0.17 2.00 15 11 N -0.49 -12.41 10.36 -12.84 -0.13 -12.55 15 12 C 0.15 3.59 8.36 -17.07 -0.14 3.44 15 13 F -0.15 -3.36 16.52 2.25 0.04 -3.32 15 14 C -0.08 -1.72 5.35 -104.84 -0.56 -2.28 15 15 C 0.10 2.01 5.76 -4.97 -0.03 1.98 15 16 N -0.83 -14.11 8.92 -11.41 -0.10 -14.21 15 17 C -0.22 -5.01 5.44 -104.01 -0.57 -5.58 15 18 C 0.32 6.61 4.79 36.00 0.17 6.78 15 19 F -0.21 -4.43 16.08 2.25 0.04 -4.39 15 20 F -0.20 -4.04 15.23 2.25 0.03 -4.01 15 21 H 0.29 5.97 8.30 -40.82 -0.34 5.63 15 22 H 0.17 4.14 6.21 -52.48 -0.33 3.81 15 23 H 0.03 0.55 7.71 -51.93 -0.40 0.15 15 24 H 0.08 1.57 5.72 -51.93 -0.30 1.28 15 25 H 0.33 4.62 9.08 -39.29 -0.36 4.26 15 26 H 0.34 5.65 8.98 -39.29 -0.35 5.30 15 27 H 0.12 2.21 5.86 -51.93 -0.30 1.90 15 LS Contribution 245.84 15.07 3.70 3.70 Total: -1.00 -26.05 245.84 -4.64 -30.69 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -1.50 Total: 11.31 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.29 Total: -1.21 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.37 Total: -43.95 kcal Atomic # 9 Polarization: -11.83 SS G_CDS: 0.11 Total: -11.72 kcal Atomic # 14 Polarization: 16.20 SS G_CDS: -5.03 Total: 11.17 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -26.05 -4.64 -30.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238609669.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.963 kcal (2) G-P(sol) polarization free energy of solvation -26.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds