Wall clock time and date at job start Mon Mar 30 2020 03:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86797 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47395 * 300.00478 * 3 2 1 6 6 H 1.48501 * 109.47161 * 60.00770 * 3 2 1 7 7 C 1.39921 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99759 * 191.61915 * 7 2 1 9 9 C 1.41352 * 119.99772 * 11.61319 * 7 2 1 10 10 C 1.40744 * 120.62803 * 27.96061 * 9 7 2 11 11 N 1.31518 * 120.30636 * 180.02562 * 10 9 7 12 12 C 1.32316 * 121.80089 * 359.97438 * 11 10 9 13 13 F 1.35098 * 119.36958 * 180.02562 * 12 11 10 14 14 C 1.38962 * 121.26771 * 359.97438 * 12 11 10 15 15 C 1.50701 * 120.23574 * 179.97438 * 14 12 11 16 16 N 1.46904 * 109.46668 * 87.45713 * 15 14 12 17 17 C 1.36896 * 119.53188 * 0.25666 * 14 12 11 18 18 C 1.50693 * 120.82625 * 179.74546 * 17 14 12 19 19 F 1.39902 * 109.47264 * 292.18186 * 18 17 14 20 20 F 1.39902 * 109.47357 * 52.18102 * 18 17 14 21 21 H 0.97002 * 120.00373 * 359.97438 * 1 2 3 22 22 H 1.08004 * 119.84872 * 359.97438 * 10 9 7 23 23 H 1.09001 * 109.46714 * 327.46114 * 15 14 12 24 24 H 1.08992 * 109.47032 * 207.45818 * 15 14 12 25 25 H 1.00903 * 110.99431 * 179.97438 * 16 15 14 26 26 H 1.00896 * 111.00168 * 303.95940 * 16 15 14 27 27 H 1.08999 * 109.47392 * 172.18267 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7025 1.3465 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8838 2.3964 1.2126 7 6 2.0082 -1.2117 -0.0005 8 1 3.0716 -1.2213 0.1878 9 6 1.3231 -2.4232 -0.2475 10 6 0.1576 -2.4400 -1.0364 11 7 -0.4751 -3.5707 -1.2617 12 6 -0.0478 -4.7199 -0.7641 13 9 -0.7358 -5.8525 -1.0273 14 6 1.0955 -4.7845 0.0231 15 6 1.5608 -6.1059 0.5785 16 7 2.4327 -6.7686 -0.4007 17 6 1.7928 -3.6383 0.2954 18 6 3.0332 -3.6738 1.1504 19 9 2.6839 -3.9991 2.4655 20 9 3.9166 -4.6367 0.6509 21 1 -0.4851 0.8400 0.0004 22 1 -0.2194 -1.5199 -1.4580 23 1 0.6970 -6.7385 0.7827 24 1 2.1142 -5.9371 1.5022 25 1 2.7585 -7.6574 -0.0513 26 1 1.9633 -6.8781 -1.2871 27 1 3.5142 -2.6959 1.1336 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238609669.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:07 Heat of formation + Delta-G solvation = -142.832775 kcal Electronic energy + Delta-G solvation = -18174.362312 eV Core-core repulsion = 14708.965820 eV Total energy + Delta-G solvation = -3465.396492 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.75290 -49.54339 -47.65901 -40.52913 -36.46967 -35.79086 -33.59056 -31.40690 -28.08402 -27.23323 -25.76088 -22.90877 -22.54574 -19.55992 -18.87834 -18.57109 -17.94267 -17.34665 -16.96263 -16.89261 -16.48575 -16.36740 -15.45832 -15.20497 -14.63709 -14.55346 -14.26799 -14.08478 -13.96380 -13.78187 -13.53755 -13.12275 -12.95538 -12.80886 -12.60219 -11.93325 -11.82252 -11.34081 -10.58577 -10.21018 -9.71084 -9.45697 -8.88398 -6.66167 0.41701 0.47651 1.45050 1.50866 1.61899 2.16395 2.50937 3.03457 3.18056 3.27291 3.51982 3.75576 3.83500 4.02033 4.11663 4.40519 4.47093 4.65680 4.92029 5.00848 5.04011 5.21298 5.57770 5.82893 6.09355 6.14689 6.41956 6.55519 6.59624 7.26600 8.10095 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.025106 B = 0.009620 C = 0.007507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.016177 B = 2909.909220 C = 3728.899798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.038 3.962 3 Si 0.996 3.004 4 H -0.247 1.247 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.453 4.453 8 H 0.108 0.892 9 C 0.063 3.937 10 C 0.063 3.937 11 N -0.506 5.506 12 C 0.119 3.881 13 F -0.145 7.145 14 C -0.072 4.072 15 C 0.111 3.889 16 N -0.832 5.832 17 C -0.234 4.234 18 C 0.329 3.671 19 F -0.215 7.215 20 F -0.196 7.196 21 H 0.302 0.698 22 H 0.160 0.840 23 H 0.037 0.963 24 H 0.081 0.919 25 H 0.355 0.645 26 H 0.340 0.660 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.617 -1.272 1.759 6.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.181 4.181 3 Si 0.815 3.185 4 H -0.170 1.170 5 H -0.188 1.188 6 H -0.191 1.191 7 C -0.481 4.481 8 H 0.126 0.874 9 C 0.058 3.942 10 C -0.104 4.104 11 N -0.219 5.219 12 C -0.030 4.030 13 F -0.125 7.125 14 C -0.076 4.076 15 C -0.020 4.020 16 N -0.363 5.363 17 C -0.242 4.242 18 C 0.276 3.724 19 F -0.196 7.196 20 F -0.177 7.177 21 H 0.113 0.887 22 H 0.177 0.823 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.169 0.831 26 H 0.153 0.847 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.119 -0.690 1.398 5.351 hybrid contribution -0.487 -0.493 0.383 0.792 sum 4.632 -1.183 1.781 5.101 Atomic orbital electron populations 1.69752 1.09385 1.32244 1.31687 1.26979 0.95582 1.05149 0.90419 0.84916 0.79662 0.74845 0.79083 1.16996 1.18810 1.19065 1.20034 0.97360 0.90189 1.40526 0.87441 1.18596 0.93077 0.93044 0.89514 1.22875 0.95564 0.92833 0.99109 1.66521 1.33582 0.99059 1.22713 1.17579 0.94899 0.82037 1.08447 1.91375 1.80089 1.47203 1.93783 1.19748 0.93601 0.96893 0.97377 1.20506 0.95172 0.90566 0.95731 1.58573 1.42974 1.29005 1.05774 1.20152 1.01965 0.94156 1.07967 1.20163 0.86413 0.91029 0.74820 1.92903 1.93253 1.94383 1.39093 1.93004 1.69791 1.67539 1.87407 0.88684 0.82283 0.94456 0.90078 0.83053 0.84730 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.49 10.86 21.82 0.24 -36.25 15 2 C 0.04 1.58 5.25 85.25 0.45 2.03 15 3 Si 1.00 31.39 29.57 68.60 2.03 33.42 15 4 H -0.25 -7.40 7.11 99.48 0.71 -6.69 15 5 H -0.26 -8.15 7.11 99.48 0.71 -7.44 15 6 H -0.27 -8.22 7.11 99.48 0.71 -7.52 15 7 C -0.45 -20.19 8.39 23.44 0.20 -19.99 15 8 H 0.11 4.30 6.33 -2.91 -0.02 4.28 15 9 C 0.06 3.07 5.57 -21.19 -0.12 2.95 15 10 C 0.06 3.21 9.87 85.35 0.84 4.05 15 11 N -0.51 -26.43 10.36 -194.55 -2.02 -28.45 15 12 C 0.12 5.83 8.36 84.79 0.71 6.54 15 13 F -0.14 -6.63 16.52 44.97 0.74 -5.89 15 14 C -0.07 -3.26 5.35 -20.01 -0.11 -3.37 15 15 C 0.11 4.13 5.76 85.56 0.49 4.62 15 16 N -0.83 -26.77 8.92 -190.00 -1.70 -28.46 15 17 C -0.23 -10.69 5.44 -19.47 -0.11 -10.80 15 18 C 0.33 12.94 4.79 71.23 0.34 13.28 15 19 F -0.21 -8.48 16.08 44.97 0.72 -7.76 15 20 F -0.20 -7.58 15.23 44.97 0.69 -6.90 15 21 H 0.30 12.14 8.30 -92.71 -0.77 11.37 15 22 H 0.16 8.17 6.21 -2.91 -0.02 8.15 15 23 H 0.04 1.33 7.71 -2.39 -0.02 1.31 15 24 H 0.08 3.01 5.72 -2.39 -0.01 3.00 15 25 H 0.35 8.98 9.08 -89.69 -0.81 8.17 15 26 H 0.34 10.92 8.98 -89.70 -0.81 10.11 15 27 H 0.14 4.80 5.86 -2.39 -0.01 4.79 15 Total: -1.00 -54.50 245.84 3.05 -51.45 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.35 Total: 29.52 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 2.70 Total: -0.68 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -3.47 Total: -93.17 kcal Atomic # 9 Polarization: -22.69 SS G_CDS: 2.15 Total: -20.54 kcal Atomic # 14 Polarization: 31.39 SS G_CDS: 2.03 Total: 33.42 kcal Total: -54.50 3.05 -51.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238609669.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.384 kcal (2) G-P(sol) polarization free energy of solvation -54.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds