Wall clock time and date at job start Mon Mar 30 2020 03:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00355 * 2 1 4 4 H 1.48504 * 109.46794 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46729 * 119.99984 * 3 2 1 6 6 H 1.48498 * 109.47294 * 240.00156 * 3 2 1 7 7 C 1.37884 * 119.99722 * 179.72964 * 2 1 3 8 8 H 1.07997 * 120.00100 * 344.06834 * 7 2 1 9 9 C 1.50697 * 119.99807 * 164.07010 * 7 2 1 10 10 H 1.08999 * 109.47543 * 54.50629 * 9 7 2 11 11 N 1.46906 * 109.47184 * 294.50624 * 9 7 2 12 12 C 1.50705 * 109.47003 * 174.50790 * 9 7 2 13 13 C 1.38796 * 120.02061 * 254.99781 * 12 9 7 14 14 N 1.39978 * 120.05276 * 359.97438 * 13 12 9 15 15 C 1.39035 * 119.90907 * 180.02562 * 13 12 9 16 16 F 1.35093 * 120.02597 * 180.02562 * 15 13 12 17 17 C 1.38318 * 119.95639 * 0.02562 * 15 13 12 18 18 C 1.38422 * 120.04565 * 0.02562 * 17 15 13 19 19 F 1.35098 * 119.95113 * 180.02562 * 18 17 15 20 20 C 1.38337 * 120.02431 * 74.72780 * 12 9 7 21 21 F 1.35102 * 119.97670 * 359.97438 * 20 12 9 22 22 H 0.96998 * 120.00547 * 176.94354 * 1 2 3 23 23 H 1.00895 * 110.99866 * 307.36461 * 11 9 7 24 24 H 1.00898 * 110.99353 * 71.32012 * 11 9 7 25 25 H 0.97003 * 119.99495 * 359.97438 * 14 13 12 26 26 H 0.96994 * 120.00545 * 179.97438 * 14 13 12 27 27 H 1.07992 * 119.97466 * 180.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6962 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0044 -1.1941 0.0056 8 1 1.4955 -2.1102 0.2667 9 6 3.4680 -1.2209 -0.3524 10 1 4.0099 -0.5182 0.2805 11 7 3.6345 -0.8396 -1.7614 12 6 4.0117 -2.6104 -0.1404 13 6 4.8158 -2.8813 0.9580 14 7 5.1231 -1.8646 1.8696 15 6 5.3165 -4.1639 1.1510 16 9 6.0990 -4.4304 2.2196 17 6 5.0131 -5.1670 0.2482 18 6 4.2118 -4.8945 -0.8471 19 9 3.9162 -5.8758 -1.7274 20 6 3.7051 -3.6180 -1.0374 21 9 2.9175 -3.3561 -2.1034 22 1 -0.4851 -0.8388 -0.0448 23 1 3.0470 -1.4008 -2.3596 24 1 3.4512 0.1437 -1.8938 25 1 4.7743 -0.9697 1.7337 26 1 5.6848 -2.0548 2.6371 27 1 5.4015 -6.1634 0.3981 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238612953.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:54 Heat of formation + Delta-G solvation = -107.616546 kcal Electronic energy + Delta-G solvation = -18099.054386 eV Core-core repulsion = 14635.184985 eV Total energy + Delta-G solvation = -3463.869402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.93073 -48.67280 -47.99441 -38.90812 -34.95718 -33.95257 -31.94161 -29.62319 -27.93517 -26.00684 -23.46679 -22.06079 -20.41800 -18.42070 -17.66684 -17.50265 -17.25142 -15.98806 -15.77264 -15.64350 -15.18127 -15.03525 -14.44156 -14.35708 -14.10610 -13.85806 -13.16355 -12.89105 -12.75852 -12.27072 -11.99193 -11.76036 -11.66025 -10.95434 -10.28170 -10.18710 -10.09233 -9.41152 -8.63918 -8.32227 -7.71709 -7.26069 -6.60773 -4.36467 1.28020 1.42152 3.15204 3.20830 3.39584 3.67524 3.91128 4.18997 4.24388 4.43561 4.72206 4.94692 5.04960 5.34564 5.67649 5.91625 5.96827 6.05015 6.24534 6.35081 6.76318 7.06658 7.56017 7.60253 7.93675 8.09052 8.24021 8.43481 8.69489 9.35303 10.68468 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.009466 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.072884 B = 2957.281701 C = 3637.678248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.035 3.965 3 Si 1.042 2.958 4 H -0.281 1.281 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.628 4.628 8 H 0.059 0.941 9 C 0.226 3.774 10 H 0.043 0.957 11 N -0.864 5.864 12 C -0.084 4.084 13 C 0.209 3.791 14 N -0.861 5.861 15 C 0.025 3.975 16 F -0.140 7.140 17 C -0.133 4.133 18 C 0.025 3.975 19 F -0.135 7.135 20 C 0.123 3.877 21 F -0.114 7.114 22 H 0.272 0.728 23 H 0.339 0.661 24 H 0.331 0.669 25 H 0.409 0.591 26 H 0.399 0.601 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.252 -4.977 1.610 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.173 4.173 3 Si 0.870 3.130 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.668 4.668 8 H 0.078 0.922 9 C 0.116 3.884 10 H 0.060 0.940 11 N -0.399 5.399 12 C -0.090 4.090 13 C 0.101 3.899 14 N -0.403 5.403 15 C 0.000 4.000 16 F -0.119 7.119 17 C -0.153 4.153 18 C 0.003 3.997 19 F -0.114 7.114 20 C 0.101 3.899 21 F -0.092 7.092 22 H 0.082 0.918 23 H 0.154 0.846 24 H 0.145 0.855 25 H 0.242 0.758 26 H 0.228 0.772 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.761 -3.583 1.695 11.468 hybrid contribution -0.903 -1.471 0.227 1.741 sum 9.858 -5.054 1.922 11.244 Atomic orbital electron populations 1.70807 1.06945 1.30784 1.43778 1.25821 0.96265 1.02292 0.92891 0.84035 0.75534 0.76244 0.77185 1.20620 1.20768 1.20005 1.22549 0.93586 0.96918 1.53703 0.92249 1.18016 0.95262 0.86797 0.88316 0.93953 1.59741 1.63016 1.09296 1.07830 1.19442 0.98408 0.98213 0.92975 1.17245 0.94171 0.87417 0.91045 1.42477 1.58564 1.11249 1.27961 1.16534 1.01703 0.92459 0.89298 1.91419 1.72612 1.94370 1.53473 1.20410 1.01028 1.00088 0.93779 1.16957 1.05348 0.84872 0.92556 1.91466 1.92350 1.60438 1.67143 1.17076 0.94208 0.91461 0.87114 1.91414 1.71206 1.93925 1.52683 0.91766 0.84565 0.85458 0.75792 0.77250 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.70 55.43 0.76 -25.15 15 2 C 0.03 0.93 5.44 -17.82 -0.10 0.84 15 3 Si 1.04 22.79 26.55 -169.99 -4.51 18.28 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.45 5.52 56.52 0.31 -5.13 15 7 C -0.63 -16.47 8.85 -34.44 -0.30 -16.78 15 8 H 0.06 1.74 7.99 -52.49 -0.42 1.32 15 9 C 0.23 5.04 2.22 -70.01 -0.16 4.88 15 10 H 0.04 0.90 4.58 -51.93 -0.24 0.67 15 11 N -0.86 -18.70 8.97 -6.65 -0.06 -18.76 15 12 C -0.08 -1.72 4.91 -104.38 -0.51 -2.24 15 13 C 0.21 3.72 6.74 -83.64 -0.56 3.16 15 14 N -0.86 -13.13 9.02 32.47 0.29 -12.83 15 15 C 0.02 0.40 7.31 -39.26 -0.29 0.11 15 16 F -0.14 -2.08 16.64 2.25 0.04 -2.04 15 17 C -0.13 -2.07 10.00 -39.48 -0.39 -2.46 15 18 C 0.02 0.45 7.30 -39.36 -0.29 0.16 15 19 F -0.14 -2.39 17.18 2.25 0.04 -2.35 15 20 C 0.12 2.51 7.01 -39.39 -0.28 2.23 15 21 F -0.11 -2.47 14.35 2.25 0.03 -2.44 15 22 H 0.27 8.01 8.72 -40.82 -0.36 7.65 15 23 H 0.34 7.55 6.39 -39.29 -0.25 7.30 15 24 H 0.33 7.02 5.68 -39.29 -0.22 6.80 15 25 H 0.41 6.40 6.56 -40.82 -0.27 6.14 15 26 H 0.40 4.94 8.32 -40.82 -0.34 4.60 15 27 H 0.15 1.85 8.06 -52.49 -0.42 1.43 15 LS Contribution 242.20 15.07 3.65 3.65 Total: -1.00 -28.16 242.20 -4.04 -32.20 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -1.40 Total: 19.53 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.88 Total: -10.10 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.99 Total: -56.74 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.51 Total: 18.28 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.16 -4.04 -32.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612953.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.415 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds