Wall clock time and date at job start Mon Mar 30 2020 03:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00355 * 2 1 4 4 H 1.48504 * 109.46794 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46729 * 119.99984 * 3 2 1 6 6 H 1.48498 * 109.47294 * 240.00156 * 3 2 1 7 7 C 1.37884 * 119.99722 * 179.72964 * 2 1 3 8 8 H 1.07997 * 120.00100 * 344.06834 * 7 2 1 9 9 C 1.50697 * 119.99807 * 164.07010 * 7 2 1 10 10 H 1.08999 * 109.47543 * 54.50629 * 9 7 2 11 11 N 1.46906 * 109.47184 * 294.50624 * 9 7 2 12 12 C 1.50705 * 109.47003 * 174.50790 * 9 7 2 13 13 C 1.38796 * 120.02061 * 254.99781 * 12 9 7 14 14 N 1.39978 * 120.05276 * 359.97438 * 13 12 9 15 15 C 1.39035 * 119.90907 * 180.02562 * 13 12 9 16 16 F 1.35093 * 120.02597 * 180.02562 * 15 13 12 17 17 C 1.38318 * 119.95639 * 0.02562 * 15 13 12 18 18 C 1.38422 * 120.04565 * 0.02562 * 17 15 13 19 19 F 1.35098 * 119.95113 * 180.02562 * 18 17 15 20 20 C 1.38337 * 120.02431 * 74.72780 * 12 9 7 21 21 F 1.35102 * 119.97670 * 359.97438 * 20 12 9 22 22 H 0.96998 * 120.00547 * 176.94354 * 1 2 3 23 23 H 1.00895 * 110.99866 * 307.36461 * 11 9 7 24 24 H 1.00898 * 110.99353 * 71.32012 * 11 9 7 25 25 H 0.97003 * 119.99495 * 359.97438 * 14 13 12 26 26 H 0.96994 * 120.00545 * 179.97438 * 14 13 12 27 27 H 1.07992 * 119.97466 * 180.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6962 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0044 -1.1941 0.0056 8 1 1.4955 -2.1102 0.2667 9 6 3.4680 -1.2209 -0.3524 10 1 4.0099 -0.5182 0.2805 11 7 3.6345 -0.8396 -1.7614 12 6 4.0117 -2.6104 -0.1404 13 6 4.8158 -2.8813 0.9580 14 7 5.1231 -1.8646 1.8696 15 6 5.3165 -4.1639 1.1510 16 9 6.0990 -4.4304 2.2196 17 6 5.0131 -5.1670 0.2482 18 6 4.2118 -4.8945 -0.8471 19 9 3.9162 -5.8758 -1.7274 20 6 3.7051 -3.6180 -1.0374 21 9 2.9175 -3.3561 -2.1034 22 1 -0.4851 -0.8388 -0.0448 23 1 3.0470 -1.4008 -2.3596 24 1 3.4512 0.1437 -1.8938 25 1 4.7743 -0.9697 1.7337 26 1 5.6848 -2.0548 2.6371 27 1 5.4015 -6.1634 0.3981 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238612953.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:54 Heat of formation + Delta-G solvation = -128.647633 kcal Electronic energy + Delta-G solvation = -18099.966363 eV Core-core repulsion = 14635.184985 eV Total energy + Delta-G solvation = -3464.781378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.41916 -49.92516 -49.50050 -40.34267 -36.68778 -35.33704 -33.90730 -31.11835 -29.30921 -27.86466 -25.12294 -23.46801 -22.07771 -20.14029 -19.32888 -18.95662 -18.67389 -17.43717 -17.15974 -17.07007 -16.58340 -16.44231 -15.94126 -15.92729 -15.62511 -15.38869 -14.92662 -14.57220 -14.44508 -13.83575 -13.55797 -13.28104 -13.14261 -12.58523 -12.01330 -11.84924 -11.42236 -11.33287 -10.67941 -9.81308 -9.56227 -8.81542 -8.49679 -6.51106 -0.13974 0.03523 1.42812 1.48057 1.67482 2.25260 2.42725 2.60192 2.84234 2.95556 3.05636 3.37544 3.54603 3.92265 4.22562 4.27374 4.57074 4.64915 4.79112 4.85936 5.15978 5.60672 5.69788 5.90876 6.24725 6.33090 6.48423 6.73887 6.78548 7.30069 8.52507 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.009466 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.072884 B = 2957.281701 C = 3637.678248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.015 4.015 3 Si 1.081 2.919 4 H -0.292 1.292 5 H -0.250 1.250 6 H -0.242 1.242 7 C -0.623 4.623 8 H 0.012 0.988 9 C 0.230 3.770 10 H 0.061 0.939 11 N -0.855 5.855 12 C -0.117 4.117 13 C 0.210 3.790 14 N -0.850 5.850 15 C 0.034 3.966 16 F -0.126 7.126 17 C -0.108 4.108 18 C 0.017 3.983 19 F -0.135 7.135 20 C 0.098 3.902 21 F -0.132 7.132 22 H 0.252 0.748 23 H 0.334 0.666 24 H 0.333 0.667 25 H 0.409 0.591 26 H 0.414 0.586 27 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.949 -4.993 2.479 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.215 4.215 3 Si 0.901 3.099 4 H -0.218 1.218 5 H -0.174 1.174 6 H -0.167 1.167 7 C -0.663 4.663 8 H 0.030 0.970 9 C 0.120 3.880 10 H 0.078 0.922 11 N -0.389 5.389 12 C -0.124 4.124 13 C 0.101 3.899 14 N -0.392 5.392 15 C 0.009 3.991 16 F -0.105 7.105 17 C -0.128 4.128 18 C -0.005 4.005 19 F -0.114 7.114 20 C 0.077 3.923 21 F -0.110 7.110 22 H 0.061 0.939 23 H 0.148 0.852 24 H 0.148 0.852 25 H 0.241 0.759 26 H 0.246 0.754 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 13.500 -3.624 2.590 14.215 hybrid contribution -1.721 -1.603 0.010 2.352 sum 11.779 -5.227 2.600 13.146 Atomic orbital electron populations 1.70957 1.08439 1.29557 1.47183 1.27349 0.96071 1.06313 0.91736 0.83603 0.75054 0.71328 0.79918 1.21801 1.17369 1.16656 1.22650 0.96022 0.94931 1.52658 0.96994 1.17893 0.92741 0.88802 0.88564 0.92172 1.59734 1.62491 1.09324 1.07323 1.19319 1.00838 0.97395 0.94807 1.17315 0.93490 0.88657 0.90456 1.42464 1.58184 1.10686 1.27866 1.16459 1.01252 0.91856 0.89528 1.91465 1.72082 1.94193 1.52768 1.20746 0.98738 1.01537 0.91808 1.16999 1.06028 0.84041 0.93450 1.91463 1.92466 1.60155 1.67334 1.17461 0.94842 0.92861 0.87145 1.91358 1.71926 1.94172 1.53553 0.93885 0.85156 0.85223 0.75875 0.75432 0.79636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.70 21.45 0.29 -55.52 15 2 C -0.01 -0.81 5.44 84.66 0.46 -0.35 15 3 Si 1.08 44.62 26.55 68.60 1.82 46.44 15 4 H -0.29 -12.60 7.11 99.48 0.71 -11.89 15 5 H -0.25 -9.00 7.11 99.48 0.71 -8.30 15 6 H -0.24 -8.70 5.52 99.48 0.55 -8.15 15 7 C -0.62 -33.35 8.85 25.60 0.23 -33.12 15 8 H 0.01 0.72 7.99 -2.91 -0.02 0.70 15 9 C 0.23 10.08 2.22 43.42 0.10 10.18 15 10 H 0.06 2.41 4.58 -2.39 -0.01 2.40 15 11 N -0.85 -36.18 8.97 -174.94 -1.57 -37.75 15 12 C -0.12 -4.70 4.91 -19.71 -0.10 -4.80 15 13 C 0.21 7.00 6.74 38.16 0.26 7.26 15 14 N -0.85 -23.47 9.02 -51.17 -0.46 -23.93 15 15 C 0.03 0.98 7.31 22.48 0.16 1.14 15 16 F -0.13 -3.23 16.64 44.97 0.75 -2.48 15 17 C -0.11 -3.02 10.00 22.33 0.22 -2.79 15 18 C 0.02 0.59 7.30 22.41 0.16 0.75 15 19 F -0.14 -4.61 17.18 44.97 0.77 -3.84 15 20 C 0.10 3.99 7.01 22.39 0.16 4.15 15 21 F -0.13 -5.85 14.35 44.97 0.65 -5.20 15 22 H 0.25 15.71 8.72 -92.71 -0.81 14.91 15 23 H 0.33 14.96 6.39 -89.70 -0.57 14.38 15 24 H 0.33 13.51 5.68 -89.70 -0.51 13.00 15 25 H 0.41 11.62 6.56 -92.71 -0.61 11.01 15 26 H 0.41 8.82 8.32 -92.71 -0.77 8.05 15 27 H 0.19 3.73 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -62.58 242.20 2.54 -60.04 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -1.37 Total: 39.83 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 1.65 Total: -17.59 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -1.74 Total: -117.21 kcal Atomic # 9 Polarization: -13.68 SS G_CDS: 2.17 Total: -11.52 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.82 Total: 46.44 kcal Total: -62.58 2.54 -60.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612953.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.604 kcal (2) G-P(sol) polarization free energy of solvation -62.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds